Wall clock time and date at job start Tue Mar 31 2020 14:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00079 * 2 1 4 4 C 1.50699 * 109.60477 * 64.25846 * 3 2 1 5 5 O 1.20824 * 120.00302 * 216.98147 * 4 3 2 6 6 O 1.34268 * 119.99722 * 36.98816 * 4 3 2 7 7 C 1.35930 * 116.99836 * 175.00697 * 6 4 3 8 8 C 1.38820 * 120.02223 * 255.70421 * 7 6 4 9 9 C 1.38184 * 120.08245 * 180.27703 * 8 7 6 10 10 C 1.38156 * 120.12124 * 359.77078 * 9 8 7 11 11 C 1.38896 * 120.04275 * 359.97438 * 10 9 8 12 12 O 1.35746 * 120.04089 * 179.97438 * 11 10 9 13 13 C 1.34826 * 117.00153 * 174.05923 * 12 11 10 14 14 H 1.08005 * 119.99919 * 5.10250 * 13 12 11 15 15 C 1.38651 * 120.00441 * 185.10241 * 13 12 11 16 16 N 1.31556 * 120.00299 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99823 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.46872 * 89.99944 * 17 15 13 19 19 H 1.48499 * 109.47252 * 210.00001 * 17 15 13 20 20 H 1.48502 * 109.46820 * 329.99793 * 17 15 13 21 21 C 1.38574 * 120.01570 * 75.47613 * 7 6 4 22 22 C 1.53863 * 109.46403 * 304.01508 * 3 2 1 23 23 C 1.55135 * 106.89737 * 287.41698 * 22 3 2 24 24 S 1.83453 * 102.20725 * 317.88569 * 23 22 3 25 25 C 1.54271 * 109.61077 * 184.59816 * 3 2 1 26 26 H 1.08995 * 109.47002 * 305.70045 * 1 2 3 27 27 H 1.09003 * 109.47088 * 65.70473 * 1 2 3 28 28 H 1.08999 * 109.46857 * 185.69607 * 1 2 3 29 29 H 1.07999 * 119.96173 * 0.03096 * 8 7 6 30 30 H 1.07994 * 119.94014 * 179.74537 * 9 8 7 31 31 H 1.08005 * 119.97919 * 179.97438 * 10 9 8 32 32 H 0.96999 * 120.00694 * 179.97438 * 16 15 13 33 33 H 1.07998 * 120.06304 * 359.97438 * 21 7 6 34 34 H 1.08997 * 109.97341 * 46.78321 * 22 3 2 35 35 H 1.09000 * 109.97110 * 168.05929 * 22 3 2 36 36 H 1.09003 * 110.85760 * 199.70451 * 23 22 3 37 37 H 1.09008 * 110.85229 * 76.06673 * 23 22 3 38 38 H 1.08996 * 110.40016 * 210.57897 * 25 3 2 39 39 H 1.09000 * 110.40158 * 333.00224 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6527 2.0182 1.2788 5 8 1.4229 3.2043 1.2654 6 8 1.5896 1.3350 2.4329 7 6 1.3648 2.0543 3.5642 8 6 2.4073 2.3071 4.4453 9 6 2.1790 3.0333 5.5985 10 6 0.9138 3.5140 5.8760 11 6 -0.1319 3.2686 4.9954 12 8 -1.3751 3.7406 5.2684 13 6 -2.3155 3.5745 4.3166 14 1 -2.0863 3.0125 3.4232 15 6 -3.5769 4.1251 4.4847 16 7 -4.4946 3.9626 3.5562 17 14 -3.9731 5.0977 6.0295 18 1 -3.6492 6.5301 5.8093 19 1 -5.4178 4.9596 6.3445 20 1 -3.1674 4.5764 7.1628 21 6 0.0957 2.5398 3.8363 22 6 1.4775 2.1039 -1.2025 23 6 2.1477 1.5114 -2.4699 24 16 3.8792 1.2674 -1.9150 25 6 3.5442 1.1893 -0.1165 26 1 -0.3633 0.5997 0.8345 27 1 -0.3633 0.4228 -0.9367 28 1 -0.3633 -1.0226 0.1020 29 1 3.3973 1.9323 4.2311 30 1 2.9908 3.2250 6.2844 31 1 0.7378 4.0810 6.7783 32 1 -5.3772 4.3474 3.6739 33 1 -0.7157 2.3476 3.1499 34 1 0.3947 1.9978 -1.2696 35 1 1.7431 3.1559 -1.0980 36 1 2.1018 2.2173 -3.2992 37 1 1.6898 0.5604 -2.7424 38 1 4.0282 2.0203 0.3965 39 1 3.8854 0.2383 0.2926 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119410859.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:33 Heat of formation + Delta-G solvation = -123.318681 kcal Electronic energy + Delta-G solvation = -25571.193005 eV Core-core repulsion = 21764.526276 eV Total energy + Delta-G solvation = -3806.666730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.82268 -41.00436 -40.01184 -38.68202 -37.55616 -35.13921 -34.53750 -31.81054 -31.18187 -30.83907 -27.77151 -27.48423 -26.96391 -25.10067 -23.44413 -22.89109 -21.38691 -20.13368 -19.99909 -19.32321 -18.25407 -17.87842 -17.82254 -17.03986 -16.87222 -16.65562 -16.27950 -15.99812 -15.76038 -15.60797 -15.11437 -15.06470 -14.78109 -14.47427 -14.30241 -14.20925 -13.64192 -13.46073 -13.29159 -13.24032 -13.15749 -13.04437 -12.85120 -12.60562 -12.42006 -12.16619 -12.04940 -11.94510 -11.61730 -11.38099 -11.00119 -10.93171 -9.90125 -9.30546 -8.79501 -8.58160 -6.33493 -0.00346 0.44026 0.48212 0.63831 1.15288 1.28306 1.32747 1.43163 1.49470 2.21102 2.22879 2.61819 2.87248 3.00633 3.03483 3.18125 3.25743 3.60992 3.91347 3.94714 4.07565 4.10350 4.15240 4.18848 4.21673 4.34028 4.42669 4.53367 4.58312 4.62572 4.67822 4.76121 4.79228 5.16058 5.23890 5.31276 5.39369 5.53748 5.59078 5.73191 5.99243 6.47196 6.74392 7.42192 8.53504 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017000 B = 0.003639 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.655947 B = 7692.600948 C = 8741.658954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.350 6.350 3 C 0.134 3.866 4 C 0.440 3.560 5 O -0.503 6.503 6 O -0.282 6.282 7 C 0.100 3.900 8 C -0.182 4.182 9 C -0.047 4.047 10 C -0.180 4.180 11 C 0.134 3.866 12 O -0.233 6.233 13 C -0.407 4.407 14 H 0.070 0.930 15 C 0.014 3.986 16 N -0.919 5.919 17 Si 0.975 3.025 18 H -0.265 1.265 19 H -0.264 1.264 20 H -0.257 1.257 21 C -0.242 4.242 22 C -0.153 4.153 23 C -0.053 4.053 24 S -0.273 6.273 25 C -0.059 4.059 26 H 0.017 0.983 27 H 0.074 0.926 28 H 0.122 0.878 29 H 0.158 0.842 30 H 0.183 0.817 31 H 0.148 0.852 32 H 0.287 0.713 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.641 -6.339 -7.238 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.268 6.268 3 C 0.091 3.909 4 C 0.282 3.718 5 O -0.388 6.388 6 O -0.196 6.196 7 C 0.059 3.941 8 C -0.200 4.200 9 C -0.065 4.065 10 C -0.198 4.198 11 C 0.084 3.916 12 O -0.140 6.140 13 C -0.483 4.483 14 H 0.088 0.912 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.190 1.190 19 H -0.189 1.189 20 H -0.181 1.181 21 C -0.261 4.261 22 C -0.192 4.192 23 C -0.200 4.200 24 S -0.047 6.047 25 C -0.206 4.206 26 H 0.036 0.964 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.176 0.824 30 H 0.200 0.800 31 H 0.165 0.835 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.381 -6.090 -7.750 19.118 hybrid contribution -2.326 0.603 0.842 2.546 sum 14.055 -5.486 -6.908 16.594 Atomic orbital electron populations 1.23178 0.79152 1.05206 1.00682 1.88068 1.21376 1.23228 1.94167 1.22438 0.95828 0.84883 0.87717 1.25329 0.73315 0.86825 0.86346 1.90746 1.43832 1.17743 1.86507 1.84650 1.81170 1.39603 1.14218 1.18563 0.92998 0.96126 0.86421 1.21196 0.98320 1.03886 0.96632 1.21166 0.95961 0.93520 0.95854 1.20822 0.91344 1.06556 1.01122 1.19458 0.85775 0.92848 0.93546 1.83531 1.16080 1.72472 1.41904 1.20607 0.91829 1.36187 0.99650 0.91228 1.25344 0.93701 0.97607 1.01910 1.69722 1.05354 1.45431 1.35404 0.85167 0.78081 0.78761 0.78407 1.18969 1.18884 1.18112 1.21212 0.97534 1.06309 1.01085 1.23157 1.03473 1.01436 0.91093 1.24285 0.90829 1.06020 0.98906 1.87627 1.15810 1.96877 1.04378 1.23990 0.90954 1.08891 0.96804 0.96433 0.90743 0.85969 0.82392 0.79960 0.83451 0.90316 0.88200 0.87768 0.88204 0.84770 0.86855 0.86714 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 10.20 113.37 1.16 1.47 16 2 O -0.35 -8.55 10.03 -136.56 -1.37 -9.92 16 3 C 0.13 3.33 0.79 -10.82 -0.01 3.33 16 4 C 0.44 14.84 5.28 71.24 0.38 15.22 16 5 O -0.50 -20.39 15.28 21.97 0.34 -20.06 16 6 O -0.28 -10.16 9.67 9.18 0.09 -10.07 16 7 C 0.10 3.93 5.18 22.49 0.12 4.05 16 8 C -0.18 -5.65 9.98 22.40 0.22 -5.43 16 9 C -0.05 -1.35 10.03 22.24 0.22 -1.12 16 10 C -0.18 -6.53 9.99 22.41 0.22 -6.31 16 11 C 0.13 6.35 6.64 22.56 0.15 6.50 16 12 O -0.23 -12.72 8.58 -22.66 -0.19 -12.91 16 13 C -0.41 -24.47 9.95 67.92 0.68 -23.80 16 14 H 0.07 4.51 5.44 -2.91 -0.02 4.49 16 15 C 0.01 0.79 5.49 84.83 0.47 1.25 16 16 N -0.92 -55.03 13.96 21.61 0.30 -54.73 16 17 Si 0.97 44.96 28.62 68.60 1.96 46.93 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 C -0.24 -11.51 8.59 22.49 0.19 -11.32 16 22 C -0.15 -3.26 4.81 31.62 0.15 -3.11 16 23 C -0.05 -0.83 7.27 72.71 0.53 -0.30 16 24 S -0.27 -5.31 23.26 -56.49 -1.31 -6.62 16 25 C -0.06 -1.21 6.51 72.41 0.47 -0.73 16 26 H 0.02 0.52 7.01 -2.39 -0.02 0.50 16 27 H 0.07 1.38 6.40 -2.39 -0.02 1.36 16 28 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 32 H 0.29 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.10 5.40 5.64 -2.91 -0.02 5.39 16 34 H 0.10 2.16 6.00 -2.39 -0.01 2.14 16 35 H 0.10 2.36 7.46 -2.39 -0.02 2.34 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.11 2.28 7.89 -2.39 -0.02 2.26 16 39 H 0.13 2.45 8.08 -2.39 -0.02 2.43 16 Total: -1.00 -73.55 342.29 5.85 -67.70 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 1.09 Total: 19.98 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 4.95 Total: -20.30 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.30 Total: -54.73 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.14 Total: -52.96 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.93 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -1.31 Total: -6.62 kcal Total: -73.55 5.85 -67.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119410859.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.615 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds