Wall clock time and date at job start Tue Mar 31 2020 14:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46872 * 300.00043 * 3 2 1 6 6 H 1.48497 * 109.47112 * 60.00056 * 3 2 1 7 7 C 1.38639 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.35783 * 116.99917 * 185.26663 * 9 7 2 11 11 C 1.38915 * 119.99299 * 186.10014 * 10 9 7 12 12 C 1.37994 * 119.99847 * 180.25612 * 11 10 9 13 13 C 1.38949 * 119.99811 * 359.46270 * 12 11 10 14 14 N 1.39878 * 120.00785 * 180.25730 * 13 12 11 15 15 C 1.34773 * 119.99825 * 35.83706 * 14 13 12 16 16 O 1.21649 * 120.00094 * 355.26733 * 15 14 13 17 17 C 1.47129 * 120.00106 * 175.27037 * 15 14 13 18 18 C 1.35777 * 125.13085 * 179.72149 * 17 15 14 19 19 C 1.46411 * 106.13546 * 179.86018 * 18 17 15 20 20 N 1.32954 * 133.88695 * 180.09996 * 19 18 17 21 21 C 1.31434 * 121.38270 * 180.32136 * 20 19 18 22 22 C 1.38857 * 121.18524 * 359.97438 * 21 20 19 23 23 C 1.38220 * 119.71537 * 0.02562 * 22 21 20 24 24 C 1.39291 * 118.32935 * 359.97438 * 23 22 21 25 25 O 1.34595 * 133.42121 * 179.97438 * 24 23 22 26 26 C 1.38950 * 119.99139 * 0.28685 * 13 12 11 27 27 C 1.37998 * 119.99560 * 359.97438 * 26 13 12 28 28 H 0.96999 * 120.00162 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00353 * 0.02562 * 11 10 9 30 30 H 1.07998 * 120.00191 * 179.74728 * 12 11 10 31 31 H 0.97000 * 120.00345 * 215.83878 * 14 13 12 32 32 H 1.08000 * 126.93300 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.40826 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.14473 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.83665 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.00612 * 180.02562 * 26 13 12 37 37 H 1.08000 * 119.99814 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0700 -3.5043 0.1100 11 6 1.4548 -4.7439 -0.0104 12 6 2.2009 -5.8988 0.1071 13 6 3.5694 -5.8216 0.3348 14 7 4.3268 -6.9920 0.4486 15 6 4.0231 -8.0671 -0.3052 16 8 3.0396 -8.0500 -1.0209 17 6 4.8811 -9.2616 -0.2626 18 6 4.6710 -10.4002 -0.9718 19 6 5.7659 -11.3064 -0.6202 20 7 6.0944 -12.5412 -0.9877 21 6 7.1576 -13.1405 -0.5000 22 6 7.9820 -12.5061 0.4198 23 6 7.6847 -11.2217 0.8348 24 6 6.5541 -10.6018 0.3077 25 8 5.9918 -9.3927 0.4908 26 6 4.1855 -4.5814 0.4500 27 6 3.4382 -3.4268 0.3378 28 1 -0.4850 0.8400 0.0004 29 1 0.3919 -4.8039 -0.1923 30 1 1.7219 -6.8626 0.0176 31 1 5.0706 -7.0300 1.0701 32 1 3.8612 -10.5968 -1.6588 33 1 7.3944 -14.1443 -0.8205 34 1 8.8514 -13.0145 0.8100 35 1 8.3131 -10.7115 1.5497 36 1 5.2493 -4.5211 0.6266 37 1 3.9170 -2.4629 0.4269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124187112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:37 Heat of formation + Delta-G solvation = 19.513320 kcal Electronic energy + Delta-G solvation = -24736.293872 eV Core-core repulsion = 20832.669603 eV Total energy + Delta-G solvation = -3903.624269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.09346 -40.27154 -39.27884 -38.67718 -36.63684 -34.21397 -33.63387 -32.26475 -31.94254 -30.58563 -30.29455 -28.14535 -25.66959 -24.98674 -23.83380 -22.61778 -22.22782 -21.41713 -20.64654 -18.92608 -18.15303 -17.97686 -17.42271 -16.95499 -16.90509 -16.38180 -15.95875 -15.02235 -14.79790 -14.62121 -14.30803 -14.17153 -13.78198 -13.70573 -13.58728 -13.49984 -13.38006 -13.07679 -12.88549 -12.61974 -11.95934 -11.67370 -11.59589 -11.08585 -11.01856 -10.86658 -10.49388 -10.25190 -9.94426 -9.72668 -9.48451 -9.39057 -9.10082 -8.77691 -8.28695 -7.04402 -6.50115 -4.07817 0.02039 0.64786 1.32717 1.91491 2.10210 2.17671 2.84427 2.98459 3.10780 3.11322 3.16626 3.27139 3.67662 3.92596 3.95239 4.25505 4.36854 4.47055 4.53327 4.72692 4.90518 5.05561 5.14092 5.24286 5.30551 5.45205 5.48453 5.69536 5.70745 5.81846 5.98629 6.12583 6.15710 6.39781 6.72033 6.75000 6.87442 7.04448 7.15142 7.32451 7.37546 7.49496 7.66352 7.94064 8.02332 8.95100 9.64343 10.67573 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.002036 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.231092 B =13747.924935 C =14274.098983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.150 3.850 11 C -0.179 4.179 12 C -0.064 4.064 13 C 0.023 3.977 14 N -0.640 5.640 15 C 0.589 3.411 16 O -0.494 6.494 17 C 0.003 3.997 18 C -0.106 4.106 19 C 0.065 3.935 20 N -0.439 5.439 21 C 0.101 3.899 22 C -0.144 4.144 23 C -0.060 4.060 24 C 0.016 3.984 25 O -0.178 6.178 26 C -0.081 4.081 27 C -0.220 4.220 28 H 0.270 0.730 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.408 0.592 32 H 0.180 0.820 33 H 0.168 0.832 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.112 0.888 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 -21.519 2.994 27.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.096 3.904 11 C -0.199 4.199 12 C -0.083 4.083 13 C -0.069 4.069 14 N -0.283 5.283 15 C 0.374 3.626 16 O -0.370 6.370 17 C -0.049 4.049 18 C -0.128 4.128 19 C -0.065 4.065 20 N -0.148 5.148 21 C -0.064 4.064 22 C -0.164 4.164 23 C -0.086 4.086 24 C -0.035 4.035 25 O -0.079 6.079 26 C -0.102 4.102 27 C -0.240 4.240 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.244 0.756 32 H 0.198 0.802 33 H 0.185 0.815 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.130 0.870 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.137 -21.435 2.014 26.318 hybrid contribution 1.539 1.095 0.891 2.089 sum 16.676 -20.340 2.905 26.462 Atomic orbital electron populations 1.70050 1.05980 1.27706 1.45591 1.25316 0.95867 0.98920 0.96467 0.85632 0.79119 0.80287 0.78297 1.19071 1.20099 1.20112 1.21379 0.91841 0.80804 1.52760 0.88938 1.84003 1.34242 1.11469 1.77858 1.19462 0.90379 0.88069 0.92499 1.20141 1.00210 0.89474 1.10053 1.20729 0.91471 0.98222 0.97917 1.17200 0.90745 0.84050 1.14903 1.43017 1.33631 1.11559 1.40074 1.16636 0.84033 0.80930 0.81035 1.90919 1.25411 1.80178 1.40519 1.22221 0.88559 0.97473 0.96670 1.22529 0.98846 0.89936 1.01463 1.20661 0.96252 0.92310 0.97244 1.67054 1.16555 1.07606 1.23619 1.22880 0.89686 1.00102 0.93782 1.22092 1.01456 0.94198 0.98655 1.20525 0.93585 0.94484 1.00014 1.20579 0.97494 0.85320 1.00072 1.84009 1.35055 1.31920 1.56867 1.20492 0.98420 0.90637 1.00604 1.20987 0.94183 0.98376 1.10443 0.91955 0.85892 0.85251 0.75611 0.80250 0.81505 0.83040 0.83425 0.86958 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.85 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.39 -10.71 9.44 30.88 0.29 -10.42 16 8 H 0.09 2.32 5.29 -52.49 -0.28 2.04 16 9 O -0.17 -4.85 9.75 0.02 0.00 -4.85 16 10 C 0.15 3.57 6.65 -39.08 -0.26 3.31 16 11 C -0.18 -3.83 9.98 -39.42 -0.39 -4.22 16 12 C -0.06 -1.22 8.68 -39.41 -0.34 -1.56 16 13 C 0.02 0.40 6.29 -83.66 -0.53 -0.13 16 14 N -0.64 -8.88 5.33 -10.88 -0.06 -8.94 16 15 C 0.59 8.53 7.64 -12.65 -0.10 8.44 16 16 O -0.49 -8.65 14.30 5.23 0.07 -8.57 16 17 C 0.00 0.03 7.07 -36.86 -0.26 -0.23 16 18 C -0.11 -1.27 10.81 -37.18 -0.40 -1.67 16 19 C 0.06 0.75 7.52 -83.17 -0.63 0.13 16 20 N -0.44 -4.74 10.41 -9.87 -0.10 -4.84 16 21 C 0.10 0.70 11.17 -17.49 -0.20 0.51 16 22 C -0.14 -0.75 10.09 -39.36 -0.40 -1.15 16 23 C -0.06 -0.41 10.19 -39.20 -0.40 -0.81 16 24 C 0.02 0.16 7.42 -38.27 -0.28 -0.12 16 25 O -0.18 -1.96 10.28 3.38 0.03 -1.93 16 26 C -0.08 -1.42 9.96 -39.41 -0.39 -1.82 16 27 C -0.22 -4.60 9.13 -39.42 -0.36 -4.96 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 30 H 0.13 2.38 6.27 -52.49 -0.33 2.05 16 31 H 0.41 4.40 8.55 -40.82 -0.35 4.05 16 32 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.24 8.06 -52.48 -0.42 -0.18 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.13 2.74 5.70 -52.49 -0.30 2.44 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -33.25 334.61 -6.94 -40.19 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.93 Total: 6.62 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -4.74 Total: -13.73 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.60 Total: -37.87 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.11 Total: -15.35 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.25 -6.94 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124187112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.702 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds