Wall clock time and date at job start Tue Mar 31 2020 14:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48501 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46872 * 300.00043 * 3 2 1 6 6 H 1.48497 * 109.47112 * 60.00056 * 3 2 1 7 7 C 1.38639 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 179.97438 * 7 2 1 9 9 O 1.34806 * 119.99729 * 359.97438 * 7 2 1 10 10 C 1.35783 * 116.99917 * 185.26663 * 9 7 2 11 11 C 1.38915 * 119.99299 * 186.10014 * 10 9 7 12 12 C 1.37994 * 119.99847 * 180.25612 * 11 10 9 13 13 C 1.38949 * 119.99811 * 359.46270 * 12 11 10 14 14 N 1.39878 * 120.00785 * 180.25730 * 13 12 11 15 15 C 1.34773 * 119.99825 * 35.83706 * 14 13 12 16 16 O 1.21649 * 120.00094 * 355.26733 * 15 14 13 17 17 C 1.47129 * 120.00106 * 175.27037 * 15 14 13 18 18 C 1.35777 * 125.13085 * 179.72149 * 17 15 14 19 19 C 1.46411 * 106.13546 * 179.86018 * 18 17 15 20 20 N 1.32954 * 133.88695 * 180.09996 * 19 18 17 21 21 C 1.31434 * 121.38270 * 180.32136 * 20 19 18 22 22 C 1.38857 * 121.18524 * 359.97438 * 21 20 19 23 23 C 1.38220 * 119.71537 * 0.02562 * 22 21 20 24 24 C 1.39291 * 118.32935 * 359.97438 * 23 22 21 25 25 O 1.34595 * 133.42121 * 179.97438 * 24 23 22 26 26 C 1.38950 * 119.99139 * 0.28685 * 13 12 11 27 27 C 1.37998 * 119.99560 * 359.97438 * 26 13 12 28 28 H 0.96999 * 120.00162 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00353 * 0.02562 * 11 10 9 30 30 H 1.07998 * 120.00191 * 179.74728 * 12 11 10 31 31 H 0.97000 * 120.00345 * 215.83878 * 14 13 12 32 32 H 1.08000 * 126.93300 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.40826 * 179.97438 * 21 20 19 34 34 H 1.08005 * 120.14473 * 179.97438 * 22 21 20 35 35 H 1.07994 * 120.83665 * 179.97438 * 23 22 21 36 36 H 1.08003 * 120.00612 * 180.02562 * 26 13 12 37 37 H 1.08000 * 119.99814 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0700 -3.5043 0.1100 11 6 1.4548 -4.7439 -0.0104 12 6 2.2009 -5.8988 0.1071 13 6 3.5694 -5.8216 0.3348 14 7 4.3268 -6.9920 0.4486 15 6 4.0231 -8.0671 -0.3052 16 8 3.0396 -8.0500 -1.0209 17 6 4.8811 -9.2616 -0.2626 18 6 4.6710 -10.4002 -0.9718 19 6 5.7659 -11.3064 -0.6202 20 7 6.0944 -12.5412 -0.9877 21 6 7.1576 -13.1405 -0.5000 22 6 7.9820 -12.5061 0.4198 23 6 7.6847 -11.2217 0.8348 24 6 6.5541 -10.6018 0.3077 25 8 5.9918 -9.3927 0.4908 26 6 4.1855 -4.5814 0.4500 27 6 3.4382 -3.4268 0.3378 28 1 -0.4850 0.8400 0.0004 29 1 0.3919 -4.8039 -0.1923 30 1 1.7219 -6.8626 0.0176 31 1 5.0706 -7.0300 1.0701 32 1 3.8612 -10.5968 -1.6588 33 1 7.3944 -14.1443 -0.8205 34 1 8.8514 -13.0145 0.8100 35 1 8.3131 -10.7115 1.5497 36 1 5.2493 -4.5211 0.6266 37 1 3.9170 -2.4629 0.4269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124187112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:36 Heat of formation + Delta-G solvation = -3.285917 kcal Electronic energy + Delta-G solvation = -24737.282521 eV Core-core repulsion = 20832.669603 eV Total energy + Delta-G solvation = -3904.612919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.86833 -41.59117 -40.44644 -39.85763 -38.25635 -35.64334 -34.33107 -34.18825 -32.65645 -31.91714 -31.44184 -29.58728 -27.43349 -26.07628 -24.52770 -24.00818 -23.43189 -22.57504 -21.88776 -20.19350 -19.62074 -19.06937 -18.77357 -18.14611 -17.80165 -17.33700 -16.89891 -16.41549 -16.33065 -16.00447 -15.69828 -15.52064 -15.16548 -14.79791 -14.60393 -14.45812 -14.33900 -14.20953 -14.09598 -13.65407 -13.59521 -13.34978 -13.25047 -12.71809 -12.54558 -12.08087 -11.70329 -11.62416 -11.38577 -11.09332 -10.62631 -10.55995 -10.19571 -9.88897 -9.83197 -8.70666 -8.46599 -6.13838 -0.75450 0.04108 0.37150 0.50006 0.71704 1.08980 1.37526 1.45211 1.55950 1.77709 1.86118 2.18594 2.65341 2.79176 2.87341 3.14240 3.27333 3.47967 3.53469 3.72129 3.92545 4.02151 4.10055 4.17670 4.25375 4.46681 4.48674 4.54200 4.65251 4.68292 4.90693 5.02186 5.03311 5.13634 5.20588 5.24465 5.40661 5.47641 5.63179 5.70031 6.01275 6.06804 6.25176 6.77168 6.81790 6.97839 7.77223 8.76656 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.039638 B = 0.002036 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.231092 B =13747.924935 C =14274.098983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.247 1.247 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.228 6.228 10 C 0.113 3.887 11 C -0.189 4.189 12 C -0.068 4.068 13 C 0.051 3.949 14 N -0.631 5.631 15 C 0.597 3.403 16 O -0.529 6.529 17 C -0.010 4.010 18 C -0.107 4.107 19 C 0.031 3.969 20 N -0.475 5.475 21 C 0.100 3.900 22 C -0.121 4.121 23 C -0.061 4.061 24 C 0.003 3.997 25 O -0.176 6.176 26 C -0.070 4.070 27 C -0.220 4.220 28 H 0.272 0.728 29 H 0.116 0.884 30 H 0.137 0.863 31 H 0.428 0.572 32 H 0.178 0.822 33 H 0.201 0.799 34 H 0.200 0.800 35 H 0.179 0.821 36 H 0.159 0.841 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.667 -23.957 4.109 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.170 1.170 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.134 6.134 10 C 0.062 3.938 11 C -0.209 4.209 12 C -0.088 4.088 13 C -0.042 4.042 14 N -0.276 5.276 15 C 0.384 3.616 16 O -0.407 6.407 17 C -0.062 4.062 18 C -0.128 4.128 19 C -0.097 4.097 20 N -0.185 5.185 21 C -0.066 4.066 22 C -0.140 4.140 23 C -0.088 4.088 24 C -0.047 4.047 25 O -0.076 6.076 26 C -0.090 4.090 27 C -0.240 4.240 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.267 0.733 32 H 0.195 0.805 33 H 0.218 0.782 34 H 0.217 0.783 35 H 0.197 0.803 36 H 0.177 0.823 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.112 -23.936 3.151 31.423 hybrid contribution 0.275 1.243 0.557 1.390 sum 20.387 -22.693 3.709 30.730 Atomic orbital electron populations 1.70203 1.08125 1.28781 1.48707 1.26633 0.96851 1.02883 0.95856 0.84499 0.78435 0.74700 0.78389 1.17027 1.19689 1.19433 1.21906 0.92697 0.81232 1.52924 0.87540 1.83971 1.35886 1.12588 1.80966 1.19919 0.91884 0.87682 0.94290 1.20265 1.00404 0.89788 1.10403 1.20858 0.92503 0.97562 0.97877 1.17308 0.90277 0.85517 1.11075 1.42888 1.33776 1.10264 1.40645 1.16789 0.83554 0.81228 0.80056 1.90906 1.27002 1.80958 1.41797 1.21517 0.89647 0.96654 0.98396 1.22687 0.99037 0.90320 1.00796 1.20685 0.96868 0.93233 0.98871 1.67051 1.18651 1.07636 1.25204 1.23645 0.88471 1.01268 0.93186 1.22666 1.01658 0.93217 0.96435 1.21093 0.92541 0.95048 1.00085 1.21051 0.98479 0.84798 1.00417 1.83954 1.34494 1.32590 1.56575 1.20838 1.00373 0.89097 0.98696 1.21136 0.93115 0.99844 1.09890 0.91848 0.86568 0.84556 0.73294 0.80469 0.78228 0.78335 0.80326 0.82298 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.28 13.67 21.61 0.30 -55.99 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.41 -23.48 9.44 67.92 0.64 -22.83 16 8 H 0.11 5.46 5.29 -2.91 -0.02 5.45 16 9 O -0.23 -13.61 9.75 -22.85 -0.22 -13.83 16 10 C 0.11 5.61 6.65 22.59 0.15 5.76 16 11 C -0.19 -8.45 9.98 22.37 0.22 -8.22 16 12 C -0.07 -2.61 8.68 22.38 0.19 -2.42 16 13 C 0.05 1.69 6.29 38.20 0.24 1.93 16 14 N -0.63 -16.05 5.33 -306.58 -1.63 -17.69 16 15 C 0.60 16.70 7.64 86.58 0.66 17.37 16 16 O -0.53 -18.47 14.30 -4.19 -0.06 -18.53 16 17 C -0.01 -0.24 7.07 24.03 0.17 -0.07 16 18 C -0.11 -2.55 10.81 23.83 0.26 -2.30 16 19 C 0.03 0.69 7.52 41.70 0.31 1.01 16 20 N -0.48 -9.45 10.41 -185.14 -1.93 -11.37 16 21 C 0.10 1.02 11.17 84.90 0.95 1.97 16 22 C -0.12 -0.64 10.09 22.41 0.23 -0.41 16 23 C -0.06 -0.58 10.19 22.52 0.23 -0.35 16 24 C 0.00 0.05 7.42 23.12 0.17 0.23 16 25 O -0.18 -3.53 10.28 -10.82 -0.11 -3.64 16 26 C -0.07 -2.28 9.96 22.38 0.22 -2.06 16 27 C -0.22 -9.13 9.13 22.37 0.20 -8.93 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.12 5.20 8.06 -2.91 -0.02 5.17 16 30 H 0.14 5.05 6.27 -2.91 -0.02 5.03 16 31 H 0.43 7.80 8.55 -92.71 -0.79 7.01 16 32 H 0.18 4.06 8.06 -2.91 -0.02 4.03 16 33 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 34 H 0.20 -0.80 8.06 -2.91 -0.02 -0.82 16 35 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 36 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 37 H 0.13 5.48 5.70 -2.91 -0.02 5.47 16 Total: -1.00 -79.44 334.61 4.06 -75.38 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.37 Total: 21.81 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 5.32 Total: -20.26 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.27 Total: -85.05 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.39 Total: -36.01 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -79.44 4.06 -75.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124187112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.096 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds