Wall clock time and date at job start Tue Mar 31 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48508 * 109.47104 * 269.99508 * 3 2 1 5 5 H 1.48505 * 109.47525 * 29.99648 * 3 2 1 6 6 H 1.48494 * 109.47101 * 149.99883 * 3 2 1 7 7 C 1.38649 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99555 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00192 * 185.40095 * 9 7 2 11 11 C 1.38962 * 120.03062 * 185.92551 * 10 9 7 12 12 C 1.38127 * 120.07303 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.14664 * 359.70369 * 12 11 10 14 14 C 1.38953 * 120.05730 * 0.54891 * 13 12 11 15 15 N 1.39823 * 120.03718 * 179.74456 * 14 13 12 16 16 C 1.34775 * 119.99888 * 326.12814 * 15 14 13 17 17 O 1.21644 * 120.00077 * 354.78138 * 16 15 14 18 18 C 1.47130 * 120.00015 * 174.78474 * 16 15 14 19 19 C 1.35784 * 125.13064 * 180.56257 * 18 16 15 20 20 C 1.46412 * 106.13063 * 180.02562 * 19 18 16 21 21 N 1.32945 * 133.88077 * 179.34204 * 20 19 18 22 22 C 1.31439 * 121.38465 * 179.97438 * 21 20 19 23 23 C 1.38864 * 121.18163 * 0.02562 * 22 21 20 24 24 C 1.38218 * 119.70830 * 359.97438 * 23 22 21 25 25 C 1.39292 * 118.34165 * 0.25101 * 24 23 22 26 26 O 1.34583 * 133.42551 * 179.74464 * 25 24 23 27 27 C 1.38721 * 120.03424 * 5.90448 * 10 9 7 28 28 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.96396 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.92668 * 180.02562 * 12 11 10 31 31 H 1.07992 * 119.97337 * 180.27992 * 13 12 11 32 32 H 0.96998 * 119.99864 * 146.12508 * 15 14 13 33 33 H 1.07993 * 126.93006 * 359.40613 * 19 18 16 34 34 H 1.07992 * 119.41100 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.14321 * 179.97438 * 23 22 21 36 36 H 1.08004 * 120.82618 * 179.97438 * 24 23 22 37 37 H 1.08004 * 120.06593 * 0.04153 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4469 2.6528 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0695 -3.5042 0.1149 11 6 1.4546 -4.7449 -0.0015 12 6 2.2014 -5.9011 0.1142 13 6 3.5628 -5.8283 0.3399 14 6 4.1827 -4.5908 0.4625 15 7 5.5593 -4.5177 0.6962 16 6 6.1667 -5.4594 1.4451 17 8 5.5049 -6.3187 1.9958 18 6 7.6301 -5.4480 1.5965 19 6 8.3483 -6.3492 2.3146 20 6 9.7505 -5.9488 2.1839 21 7 10.8943 -6.4282 2.6628 22 6 12.0458 -5.8604 2.3813 23 6 12.1133 -4.7346 1.5712 24 6 10.9526 -4.1967 1.0478 25 6 9.7408 -4.8083 1.3604 26 8 8.4616 -4.5483 1.0327 27 6 3.4349 -3.4274 0.3477 28 1 -0.4850 0.8400 -0.0004 29 1 0.3916 -4.8052 -0.1827 30 1 1.7211 -6.8641 0.0229 31 1 4.1447 -6.7340 0.4254 32 1 6.0772 -3.7892 0.3193 33 1 7.9622 -7.1860 2.8776 34 1 12.9557 -6.2764 2.7879 35 1 13.0685 -4.2813 1.3510 36 1 10.9841 -3.3213 0.4160 37 1 3.9149 -2.4642 0.4389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125149682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:00 Heat of formation + Delta-G solvation = 18.666439 kcal Electronic energy + Delta-G solvation = -25070.246905 eV Core-core repulsion = 21166.585912 eV Total energy + Delta-G solvation = -3903.660993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.08717 -40.33715 -39.27011 -38.66636 -36.57682 -34.49070 -33.62359 -32.29938 -31.93404 -30.70855 -29.40725 -28.62512 -25.64016 -25.17634 -23.84844 -22.73023 -21.92961 -21.58406 -20.55331 -18.98284 -18.18108 -17.93256 -17.54197 -16.94914 -16.78110 -15.98925 -15.71333 -15.23392 -15.01391 -14.67146 -14.27661 -14.18554 -13.97990 -13.74643 -13.62276 -13.49935 -13.44690 -13.09577 -13.02027 -12.46541 -11.86347 -11.64633 -11.31898 -11.05611 -10.99862 -10.89919 -10.49893 -10.35525 -9.93290 -9.84051 -9.54130 -9.46698 -9.09635 -8.86337 -7.85699 -7.25382 -6.49834 -4.09803 0.02094 0.66647 1.30408 1.91129 2.02986 2.30711 2.81775 2.95670 3.09079 3.09859 3.14278 3.28610 3.66108 3.91704 3.96710 4.26253 4.39053 4.48691 4.53515 4.73039 4.90378 5.04621 5.13978 5.20633 5.32478 5.47546 5.60703 5.69773 5.82483 5.88869 5.92408 6.10738 6.16645 6.39129 6.53175 6.83503 6.84515 7.03867 7.21400 7.34144 7.38699 7.46837 7.66866 7.92198 7.96533 8.95322 9.64353 10.67952 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002805 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.162668 B = 9979.317490 C =11694.400044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.393 4.393 8 H 0.090 0.910 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.195 4.195 12 C -0.062 4.062 13 C -0.205 4.205 14 C 0.174 3.826 15 N -0.651 5.651 16 C 0.596 3.404 17 O -0.487 6.487 18 C 0.000 4.000 19 C -0.103 4.103 20 C 0.064 3.936 21 N -0.439 5.439 22 C 0.101 3.899 23 C -0.143 4.143 24 C -0.059 4.059 25 C 0.018 3.982 26 O -0.177 6.177 27 C -0.251 4.251 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.413 0.587 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.516 -7.940 1.270 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.214 4.214 12 C -0.081 4.081 13 C -0.226 4.226 14 C 0.082 3.918 15 N -0.294 5.294 16 C 0.381 3.619 17 O -0.362 6.362 18 C -0.052 4.052 19 C -0.125 4.125 20 C -0.066 4.066 21 N -0.148 5.148 22 C -0.064 4.064 23 C -0.163 4.163 24 C -0.086 4.086 25 C -0.033 4.033 26 O -0.077 6.077 27 C -0.272 4.272 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.249 0.751 33 H 0.198 0.802 34 H 0.185 0.815 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.431 -8.858 2.000 23.276 hybrid contribution 0.983 1.972 -0.594 2.282 sum 22.415 -6.886 1.406 23.491 Atomic orbital electron populations 1.70035 1.05946 1.27752 1.45747 1.25285 0.95845 0.98825 0.96475 0.85724 0.78900 0.80143 0.78717 1.19838 1.20207 1.19265 1.21271 0.91674 0.80846 1.53168 0.89214 1.84023 1.33898 1.11375 1.78359 1.19076 0.89411 0.88202 0.91992 1.20297 1.00261 0.89948 1.10941 1.20530 0.92985 0.97079 0.97465 1.20540 0.95318 0.95659 1.11041 1.17358 0.80732 0.94354 0.99378 1.43306 1.08362 1.27640 1.50139 1.16613 0.82859 0.82772 0.79652 1.90936 1.62232 1.36837 1.46161 1.22136 0.90970 0.91927 1.00132 1.22521 0.88505 1.00691 1.00738 1.20639 0.93426 0.94203 0.98285 1.67048 0.97010 1.30324 1.20429 1.22881 0.95301 0.92891 0.95376 1.22099 0.98526 0.97465 0.98208 1.20547 0.87373 1.00407 1.00237 1.20585 0.84757 0.98140 0.99822 1.84024 1.14321 1.47829 1.61523 1.20814 0.94434 0.97218 1.14766 0.91937 0.86174 0.86352 0.86247 0.75051 0.80214 0.81485 0.83002 0.83343 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.70 9.44 30.88 0.29 -10.41 16 8 H 0.09 2.24 5.30 -52.49 -0.28 1.96 16 9 O -0.17 -4.83 9.76 0.06 0.00 -4.83 16 10 C 0.17 3.97 6.64 -39.13 -0.26 3.71 16 11 C -0.19 -4.05 9.99 -39.35 -0.39 -4.45 16 12 C -0.06 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.20 -3.79 8.65 -39.33 -0.34 -4.13 16 14 C 0.17 3.26 6.26 -83.75 -0.52 2.73 16 15 N -0.65 -9.97 5.33 -10.94 -0.06 -10.03 16 16 C 0.60 9.03 7.53 -12.65 -0.10 8.93 16 17 O -0.49 -8.60 14.54 5.24 0.08 -8.53 16 18 C 0.00 0.01 7.07 -36.85 -0.26 -0.26 16 19 C -0.10 -1.26 10.81 -37.17 -0.40 -1.66 16 20 C 0.06 0.76 7.52 -83.18 -0.63 0.14 16 21 N -0.44 -4.85 10.41 -9.87 -0.10 -4.96 16 22 C 0.10 0.74 11.17 -17.49 -0.20 0.54 16 23 C -0.14 -0.82 10.09 -39.36 -0.40 -1.22 16 24 C -0.06 -0.45 10.19 -39.20 -0.40 -0.85 16 25 C 0.02 0.19 7.42 -38.27 -0.28 -0.09 16 26 O -0.18 -2.10 10.29 3.38 0.03 -2.07 16 27 C -0.25 -5.31 9.05 -39.20 -0.35 -5.66 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.12 2.12 6.44 -52.49 -0.34 1.78 16 32 H 0.41 5.27 8.54 -40.82 -0.35 4.92 16 33 H 0.18 1.97 8.06 -52.49 -0.42 1.54 16 34 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 36 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.13 2.73 5.71 -52.48 -0.30 2.43 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -33.21 334.88 -6.94 -40.15 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -2.94 Total: 7.46 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -4.73 Total: -13.20 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.60 Total: -39.04 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.11 Total: -15.43 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.21 -6.94 -40.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125149682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.818 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds