Wall clock time and date at job start Tue Mar 31 2020 14:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48508 * 109.47104 * 269.99508 * 3 2 1 5 5 H 1.48505 * 109.47525 * 29.99648 * 3 2 1 6 6 H 1.48494 * 109.47101 * 149.99883 * 3 2 1 7 7 C 1.38649 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99555 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00334 * 0.02562 * 7 2 1 10 10 C 1.35748 * 117.00192 * 185.40095 * 9 7 2 11 11 C 1.38962 * 120.03062 * 185.92551 * 10 9 7 12 12 C 1.38127 * 120.07303 * 179.97438 * 11 10 9 13 13 C 1.38193 * 120.14664 * 359.70369 * 12 11 10 14 14 C 1.38953 * 120.05730 * 0.54891 * 13 12 11 15 15 N 1.39823 * 120.03718 * 179.74456 * 14 13 12 16 16 C 1.34775 * 119.99888 * 326.12814 * 15 14 13 17 17 O 1.21644 * 120.00077 * 354.78138 * 16 15 14 18 18 C 1.47130 * 120.00015 * 174.78474 * 16 15 14 19 19 C 1.35784 * 125.13064 * 180.56257 * 18 16 15 20 20 C 1.46412 * 106.13063 * 180.02562 * 19 18 16 21 21 N 1.32945 * 133.88077 * 179.34204 * 20 19 18 22 22 C 1.31439 * 121.38465 * 179.97438 * 21 20 19 23 23 C 1.38864 * 121.18163 * 0.02562 * 22 21 20 24 24 C 1.38218 * 119.70830 * 359.97438 * 23 22 21 25 25 C 1.39292 * 118.34165 * 0.25101 * 24 23 22 26 26 O 1.34583 * 133.42551 * 179.74464 * 25 24 23 27 27 C 1.38721 * 120.03424 * 5.90448 * 10 9 7 28 28 H 0.97000 * 119.99992 * 0.02562 * 1 2 3 29 29 H 1.07995 * 119.96396 * 359.97438 * 11 10 9 30 30 H 1.08001 * 119.92668 * 180.02562 * 12 11 10 31 31 H 1.07992 * 119.97337 * 180.27992 * 13 12 11 32 32 H 0.96998 * 119.99864 * 146.12508 * 15 14 13 33 33 H 1.07993 * 126.93006 * 359.40613 * 19 18 16 34 34 H 1.07992 * 119.41100 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.14321 * 179.97438 * 23 22 21 36 36 H 1.08004 * 120.82618 * 179.97438 * 24 23 22 37 37 H 1.08004 * 120.06593 * 0.04153 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4469 2.6528 0.7000 6 1 3.5470 1.4403 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0695 -3.5042 0.1149 11 6 1.4546 -4.7449 -0.0015 12 6 2.2014 -5.9011 0.1142 13 6 3.5628 -5.8283 0.3399 14 6 4.1827 -4.5908 0.4625 15 7 5.5593 -4.5177 0.6962 16 6 6.1667 -5.4594 1.4451 17 8 5.5049 -6.3187 1.9958 18 6 7.6301 -5.4480 1.5965 19 6 8.3483 -6.3492 2.3146 20 6 9.7505 -5.9488 2.1839 21 7 10.8943 -6.4282 2.6628 22 6 12.0458 -5.8604 2.3813 23 6 12.1133 -4.7346 1.5712 24 6 10.9526 -4.1967 1.0478 25 6 9.7408 -4.8083 1.3604 26 8 8.4616 -4.5483 1.0327 27 6 3.4349 -3.4274 0.3477 28 1 -0.4850 0.8400 -0.0004 29 1 0.3916 -4.8052 -0.1827 30 1 1.7211 -6.8641 0.0229 31 1 4.1447 -6.7340 0.4254 32 1 6.0772 -3.7892 0.3193 33 1 7.9622 -7.1860 2.8776 34 1 12.9557 -6.2764 2.7879 35 1 13.0685 -4.2813 1.3510 36 1 10.9841 -3.3213 0.4160 37 1 3.9149 -2.4642 0.4389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125149682.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:00 Heat of formation + Delta-G solvation = -3.764759 kcal Electronic energy + Delta-G solvation = -25071.219595 eV Core-core repulsion = 21166.585912 eV Total energy + Delta-G solvation = -3904.633683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.90595 -41.67874 -40.44231 -39.87746 -38.22589 -35.91467 -34.36107 -34.24974 -32.68325 -31.72304 -30.88934 -30.12628 -27.39113 -26.33722 -24.58026 -23.77896 -23.55480 -22.64489 -21.83720 -20.28629 -19.62915 -19.19541 -18.77883 -17.84872 -17.57300 -17.19180 -16.96092 -16.83076 -16.40021 -16.05759 -15.76184 -15.53980 -15.48770 -14.82574 -14.62288 -14.48342 -14.40820 -14.20798 -14.10122 -13.62108 -13.60778 -13.30530 -12.88721 -12.66755 -12.53337 -12.13269 -11.77316 -11.71868 -11.44505 -11.26858 -10.76344 -10.58567 -10.21876 -9.87753 -9.43263 -8.95180 -8.47505 -6.16318 -0.80436 0.01844 0.26142 0.61815 0.71127 1.05742 1.35659 1.44806 1.52847 1.70284 1.78396 2.17112 2.63328 2.79641 2.81986 3.13952 3.24637 3.46070 3.48036 3.68206 3.90190 4.06729 4.14944 4.22677 4.27966 4.37952 4.46733 4.56892 4.57974 4.65405 4.88778 4.98511 5.00280 5.09069 5.15944 5.29329 5.36816 5.60290 5.63372 5.67501 5.99830 6.07094 6.18030 6.67227 6.74483 6.96818 7.75257 8.75293 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002805 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.162668 B = 9979.317490 C =11694.400044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.223 6.223 10 C 0.134 3.866 11 C -0.206 4.206 12 C -0.048 4.048 13 C -0.197 4.197 14 C 0.180 3.820 15 N -0.646 5.646 16 C 0.604 3.396 17 O -0.516 6.516 18 C -0.017 4.017 19 C -0.098 4.098 20 C 0.033 3.967 21 N -0.471 5.471 22 C 0.102 3.898 23 C -0.119 4.119 24 C -0.065 4.065 25 C 0.001 3.999 26 O -0.180 6.180 27 C -0.255 4.255 28 H 0.273 0.727 29 H 0.123 0.877 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.425 0.575 33 H 0.184 0.816 34 H 0.203 0.797 35 H 0.200 0.800 36 H 0.176 0.824 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.924 -8.227 1.215 28.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.130 6.130 10 C 0.083 3.917 11 C -0.226 4.226 12 C -0.067 4.067 13 C -0.218 4.218 14 C 0.087 3.913 15 N -0.291 5.291 16 C 0.391 3.609 17 O -0.393 6.393 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.095 4.095 21 N -0.182 5.182 22 C -0.064 4.064 23 C -0.138 4.138 24 C -0.091 4.091 25 C -0.049 4.049 26 O -0.081 6.081 27 C -0.276 4.276 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.177 0.823 31 H 0.152 0.848 32 H 0.264 0.736 33 H 0.201 0.799 34 H 0.220 0.780 35 H 0.217 0.783 36 H 0.193 0.807 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 25.884 -9.185 1.938 27.534 hybrid contribution -0.032 1.752 -0.529 1.830 sum 25.852 -7.433 1.409 26.936 Atomic orbital electron populations 1.70182 1.08025 1.28860 1.48528 1.26576 0.96828 1.02721 0.95780 0.84604 0.77825 0.74608 0.79300 1.18661 1.19813 1.17602 1.21791 0.92501 0.81342 1.53331 0.87988 1.83989 1.35470 1.12469 1.81027 1.19601 0.90601 0.88162 0.93334 1.20547 1.00871 0.89915 1.11253 1.20944 0.92751 0.97796 0.95185 1.20894 0.95706 0.96036 1.09119 1.17378 0.82200 0.93674 0.98084 1.43232 1.07084 1.28400 1.50359 1.16755 0.83748 0.81816 0.78585 1.90905 1.63339 1.37798 1.47224 1.21491 0.89866 0.93350 1.02136 1.22704 0.89368 1.00179 0.99635 1.20669 0.93539 0.95357 0.99954 1.67060 0.97733 1.31693 1.21664 1.23668 0.95217 0.92952 0.94595 1.22672 0.99717 0.95912 0.95483 1.21095 0.86435 1.01111 1.00437 1.21087 0.85029 0.98556 1.00215 1.83969 1.14903 1.47584 1.61658 1.20823 0.93811 0.98090 1.14907 0.91794 0.85880 0.82327 0.84789 0.73617 0.79894 0.77993 0.78321 0.80664 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.53 13.67 21.61 0.30 -55.23 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 41.77 29.55 68.60 2.03 43.80 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 7 C -0.41 -23.47 9.44 67.92 0.64 -22.83 16 8 H 0.10 5.25 5.30 -2.91 -0.02 5.24 16 9 O -0.22 -13.16 9.76 -22.69 -0.22 -13.38 16 10 C 0.13 6.60 6.64 22.56 0.15 6.75 16 11 C -0.21 -8.69 9.99 22.42 0.22 -8.47 16 12 C -0.05 -1.68 10.03 22.23 0.22 -1.46 16 13 C -0.20 -7.01 8.65 22.43 0.19 -6.82 16 14 C 0.18 6.67 6.26 38.17 0.24 6.91 16 15 N -0.65 -19.46 5.33 -306.75 -1.64 -21.09 16 16 C 0.60 18.07 7.53 86.58 0.65 18.72 16 17 O -0.52 -18.02 14.54 -4.17 -0.06 -18.08 16 18 C -0.02 -0.43 7.07 24.04 0.17 -0.26 16 19 C -0.10 -2.38 10.81 23.83 0.26 -2.12 16 20 C 0.03 0.75 7.52 41.70 0.31 1.07 16 21 N -0.47 -9.57 10.41 -185.14 -1.93 -11.50 16 22 C 0.10 1.10 11.17 84.90 0.95 2.05 16 23 C -0.12 -0.79 10.09 22.41 0.23 -0.56 16 24 C -0.06 -0.75 10.19 22.52 0.23 -0.52 16 25 C 0.00 0.03 7.42 23.12 0.17 0.20 16 26 O -0.18 -4.16 10.29 -10.80 -0.11 -4.27 16 27 C -0.25 -11.00 9.05 22.51 0.20 -10.80 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.13 4.47 6.44 -2.91 -0.02 4.46 16 32 H 0.43 10.62 8.54 -92.71 -0.79 9.83 16 33 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.20 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.20 -0.53 8.06 -2.91 -0.02 -0.55 16 36 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.13 5.52 5.71 -2.91 -0.02 5.50 16 Total: -1.00 -77.51 334.88 4.04 -73.47 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.37 Total: 25.13 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 5.31 Total: -18.85 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -3.27 Total: -87.83 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.39 Total: -35.73 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -77.51 4.04 -73.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125149682.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.706 kcal (2) G-P(sol) polarization free energy of solvation -77.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds