Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48502 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47300 * 300.00159 * 3 2 1 6 6 H 1.48501 * 109.46831 * 60.00315 * 3 2 1 7 7 C 1.37880 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47191 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99625 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00282 * 180.02562 * 10 9 7 13 13 C 1.39923 * 120.00266 * 174.91178 * 12 10 9 14 14 C 1.40013 * 120.18126 * 147.00276 * 13 12 10 15 15 N 1.30960 * 121.62819 * 180.02562 * 14 13 12 16 16 C 1.33688 * 121.59180 * 359.97438 * 15 14 13 17 17 C 1.41739 * 120.04624 * 0.02562 * 16 15 14 18 18 C 1.40434 * 119.62875 * 179.97438 * 17 16 15 19 19 C 1.36159 * 119.62401 * 0.02562 * 18 17 16 20 20 C 1.39319 * 120.85424 * 359.97438 * 19 18 17 21 21 C 1.36105 * 121.07432 * 0.02562 * 20 19 18 22 22 C 1.50695 * 120.11265 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46762 * 359.95205 * 22 21 20 24 24 F 1.39895 * 109.47334 * 119.95319 * 22 21 20 25 25 F 1.39903 * 109.47300 * 239.95456 * 22 21 20 26 26 C 1.38140 * 120.18097 * 326.72580 * 13 12 10 27 27 H 0.97002 * 119.99235 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47444 * 60.00138 * 9 7 2 29 29 H 1.09000 * 109.47360 * 299.99592 * 9 7 2 30 30 H 0.97008 * 119.99982 * 354.63801 * 12 10 9 31 31 H 1.07992 * 119.17961 * 0.02562 * 14 13 12 32 32 H 1.07996 * 120.18667 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.57511 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.46305 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.98650 * 359.97385 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 8 3.4226 -3.4231 -0.0010 12 7 1.7808 -4.9153 -0.0011 13 6 2.6855 -5.9773 -0.1085 14 6 2.4257 -7.1915 0.5385 15 7 3.2529 -8.2035 0.4575 16 6 4.3861 -8.1272 -0.2476 17 6 4.7177 -6.9302 -0.9305 18 6 5.9106 -6.8594 -1.6682 19 6 6.7352 -7.9416 -1.7198 20 6 6.4115 -9.1193 -1.0495 21 6 5.2637 -9.2226 -0.3254 22 6 4.9351 -10.5067 0.3917 23 9 5.9521 -11.4404 0.1653 24 9 4.8259 -10.2596 1.7643 25 9 3.7225 -11.0122 -0.0891 26 6 3.8370 -5.8355 -0.8583 27 1 -0.4849 0.8401 0.0004 28 1 0.6238 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.8304 -5.0938 0.0771 31 1 1.5209 -7.2959 1.1187 32 1 6.1724 -5.9517 -2.1916 33 1 7.6526 -7.8862 -2.2870 34 1 7.0821 -9.9639 -1.1054 35 1 4.0566 -4.9103 -1.3704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = -135.103703 kcal Electronic energy + Delta-G solvation = -26227.683732 eV Core-core repulsion = 21775.498025 eV Total energy + Delta-G solvation = -4452.185707 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.14732 -47.71293 -47.53144 -41.18299 -39.33479 -37.30837 -34.71289 -33.43575 -33.08710 -30.88202 -30.15433 -28.52045 -26.20269 -24.73828 -24.15107 -23.01831 -21.79500 -20.16934 -18.98824 -18.56701 -18.45868 -18.11143 -17.14969 -16.85504 -16.46460 -15.78919 -15.30149 -14.99372 -14.71095 -14.53532 -14.50459 -14.22999 -14.20122 -14.01110 -13.95477 -13.73814 -13.70979 -13.30140 -12.98334 -12.88614 -12.28729 -12.19809 -11.94129 -11.80023 -11.49278 -11.01837 -10.87926 -10.76139 -10.10827 -10.08585 -9.79100 -9.43466 -8.96820 -8.79889 -8.57791 -7.98234 -6.20133 -4.21101 0.00061 0.58778 1.66810 2.55877 2.59633 3.24747 3.29854 3.31544 3.33587 3.42637 3.61962 3.83998 3.94700 4.08541 4.36603 4.43876 4.54269 4.63989 4.68696 4.77015 4.88619 5.06854 5.18787 5.36875 5.47923 5.55401 5.83630 5.90350 5.99054 6.05817 6.26592 6.37904 6.81116 6.96330 7.09720 7.60407 7.67891 7.82845 8.12174 8.76250 8.89765 9.44938 10.91992 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.002678 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.414434 B =10454.080632 C =11111.255895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.515 3.485 11 O -0.521 6.521 12 N -0.683 5.683 13 C 0.110 3.890 14 C 0.135 3.865 15 N -0.464 5.464 16 C 0.137 3.863 17 C -0.082 4.082 18 C -0.055 4.055 19 C -0.131 4.131 20 C -0.050 4.050 21 C -0.163 4.163 22 C 0.520 3.480 23 F -0.184 7.184 24 F -0.170 7.170 25 F -0.171 7.171 26 C -0.068 4.068 27 H 0.263 0.737 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.413 0.587 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.453 -19.692 -3.047 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.552 4.552 8 H 0.095 0.905 9 C -0.032 4.032 10 C 0.306 3.694 11 O -0.394 6.394 12 N -0.330 5.330 13 C 0.011 3.989 14 C -0.040 4.040 15 N -0.171 5.171 16 C 0.014 3.986 17 C -0.084 4.084 18 C -0.074 4.074 19 C -0.149 4.149 20 C -0.070 4.070 21 C -0.165 4.165 22 C 0.466 3.534 23 F -0.166 7.166 24 F -0.152 7.152 25 F -0.152 7.152 26 C -0.097 4.097 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.249 0.751 31 H 0.184 0.816 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.005 -20.173 -2.622 22.247 hybrid contribution -0.090 1.416 -0.170 1.429 sum 8.915 -18.758 -2.792 20.955 Atomic orbital electron populations 1.69955 1.06071 1.27106 1.50571 1.25003 0.94935 0.99605 0.94913 0.86354 0.80273 0.82794 0.77606 1.19447 1.20901 1.20898 1.21148 0.94270 0.88873 1.50949 0.90530 1.19303 0.93942 0.89879 1.00038 1.22477 0.91592 0.82815 0.72476 1.90564 1.17928 1.84016 1.46912 1.44189 1.09758 1.04970 1.74062 1.18927 0.93557 0.89947 0.96461 1.22940 0.98541 0.87597 0.94920 1.67942 1.02578 1.29942 1.16667 1.18157 0.92395 0.91968 0.96041 1.18647 0.96583 0.93680 0.99509 1.21299 0.91816 0.99039 0.95220 1.20843 1.00750 0.92493 1.00796 1.20813 0.94296 0.98890 0.93004 1.19528 0.98573 0.93050 1.05326 1.17946 0.74271 0.83663 0.77549 1.93139 1.60481 1.68438 1.94533 1.93219 1.95770 1.94238 1.31933 1.93213 1.45630 1.88483 1.87898 1.21792 0.93221 0.98537 0.96176 0.92742 0.92748 0.92896 0.75074 0.81620 0.84143 0.84366 0.83996 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.92 8.92 -34.44 -0.31 -14.22 16 8 H 0.08 2.16 6.75 -52.49 -0.35 1.81 16 9 C 0.01 0.17 5.46 -29.03 -0.16 0.02 16 10 C 0.51 10.37 7.58 -10.99 -0.08 10.28 16 11 O -0.52 -12.00 13.16 5.54 0.07 -11.92 16 12 N -0.68 -10.32 5.35 -9.76 -0.05 -10.37 16 13 C 0.11 1.62 6.30 -83.53 -0.53 1.09 16 14 C 0.13 1.77 11.08 -17.26 -0.19 1.58 16 15 N -0.46 -6.78 9.24 -10.82 -0.10 -6.88 16 16 C 0.14 1.95 6.51 -84.84 -0.55 1.40 16 17 C -0.08 -1.11 5.74 -106.81 -0.61 -1.73 16 18 C -0.05 -0.59 9.77 -39.50 -0.39 -0.97 16 19 C -0.13 -1.15 9.96 -39.93 -0.40 -1.54 16 20 C -0.05 -0.48 9.36 -39.95 -0.37 -0.86 16 21 C -0.16 -2.03 5.37 -104.51 -0.56 -2.59 16 22 C 0.52 6.54 2.99 36.00 0.11 6.65 16 23 F -0.18 -2.03 15.94 2.25 0.04 -2.00 16 24 F -0.17 -2.36 16.96 2.25 0.04 -2.32 16 25 F -0.17 -2.30 16.96 2.25 0.04 -2.26 16 26 C -0.07 -1.04 8.51 -38.69 -0.33 -1.36 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.41 4.83 8.82 -40.82 -0.36 4.47 16 31 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.02 7.08 -52.49 -0.37 0.64 16 35 H 0.16 2.57 6.47 -52.49 -0.34 2.23 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.78 322.65 -6.53 -38.31 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -2.67 Total: 1.59 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.47 Total: -0.81 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.58 Total: -41.54 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.92 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.78 -6.53 -38.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.791 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds