Wall clock time and date at job start Tue Mar 31 2020 14:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48502 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47300 * 300.00159 * 3 2 1 6 6 H 1.48501 * 109.46831 * 60.00315 * 3 2 1 7 7 C 1.37880 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47191 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99625 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00282 * 180.02562 * 10 9 7 13 13 C 1.39923 * 120.00266 * 174.91178 * 12 10 9 14 14 C 1.40013 * 120.18126 * 147.00276 * 13 12 10 15 15 N 1.30960 * 121.62819 * 180.02562 * 14 13 12 16 16 C 1.33688 * 121.59180 * 359.97438 * 15 14 13 17 17 C 1.41739 * 120.04624 * 0.02562 * 16 15 14 18 18 C 1.40434 * 119.62875 * 179.97438 * 17 16 15 19 19 C 1.36159 * 119.62401 * 0.02562 * 18 17 16 20 20 C 1.39319 * 120.85424 * 359.97438 * 19 18 17 21 21 C 1.36105 * 121.07432 * 0.02562 * 20 19 18 22 22 C 1.50695 * 120.11265 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46762 * 359.95205 * 22 21 20 24 24 F 1.39895 * 109.47334 * 119.95319 * 22 21 20 25 25 F 1.39903 * 109.47300 * 239.95456 * 22 21 20 26 26 C 1.38140 * 120.18097 * 326.72580 * 13 12 10 27 27 H 0.97002 * 119.99235 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47444 * 60.00138 * 9 7 2 29 29 H 1.09000 * 109.47360 * 299.99592 * 9 7 2 30 30 H 0.97008 * 119.99982 * 354.63801 * 12 10 9 31 31 H 1.07992 * 119.17961 * 0.02562 * 14 13 12 32 32 H 1.07996 * 120.18667 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.57511 * 180.02562 * 19 18 17 34 34 H 1.08001 * 119.46305 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.98650 * 359.97385 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 8 3.4226 -3.4231 -0.0010 12 7 1.7808 -4.9153 -0.0011 13 6 2.6855 -5.9773 -0.1085 14 6 2.4257 -7.1915 0.5385 15 7 3.2529 -8.2035 0.4575 16 6 4.3861 -8.1272 -0.2476 17 6 4.7177 -6.9302 -0.9305 18 6 5.9106 -6.8594 -1.6682 19 6 6.7352 -7.9416 -1.7198 20 6 6.4115 -9.1193 -1.0495 21 6 5.2637 -9.2226 -0.3254 22 6 4.9351 -10.5067 0.3917 23 9 5.9521 -11.4404 0.1653 24 9 4.8259 -10.2596 1.7643 25 9 3.7225 -11.0122 -0.0891 26 6 3.8370 -5.8355 -0.8583 27 1 -0.4849 0.8401 0.0004 28 1 0.6238 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 0.8304 -5.0938 0.0771 31 1 1.5209 -7.2959 1.1187 32 1 6.1724 -5.9517 -2.1916 33 1 7.6526 -7.8862 -2.2870 34 1 7.0821 -9.9639 -1.1054 35 1 4.0566 -4.9103 -1.3704 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:34 Heat of formation + Delta-G solvation = -154.342344 kcal Electronic energy + Delta-G solvation = -26228.517982 eV Core-core repulsion = 21775.498025 eV Total energy + Delta-G solvation = -4453.019957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.11805 -48.65878 -48.55010 -42.24187 -40.72225 -38.36218 -35.99974 -35.14033 -34.44407 -31.81579 -31.64587 -30.04204 -27.12249 -26.23311 -25.35785 -24.34205 -22.75392 -21.62526 -20.01272 -19.58542 -19.44802 -19.13648 -18.52639 -18.23930 -17.84520 -17.28112 -16.53599 -16.32085 -16.17509 -15.67932 -15.48844 -15.31960 -15.25670 -15.00494 -15.00179 -14.81758 -14.74604 -14.69559 -14.27286 -14.18305 -13.76466 -13.43989 -13.04153 -12.85299 -12.75674 -12.68660 -12.60194 -12.16645 -12.05657 -11.45769 -11.18027 -11.03304 -10.63677 -10.43387 -9.73070 -9.12707 -8.27127 -6.34044 -0.93652 -0.39209 0.62379 1.39694 1.41839 1.53584 1.54989 1.65042 1.88818 2.04710 2.43089 2.67237 2.80566 3.00583 3.09527 3.17327 3.46438 3.63107 3.64933 3.74876 3.76476 4.04211 4.25462 4.31075 4.45230 4.58711 4.70472 4.91272 4.99367 5.05818 5.12692 5.22439 5.28272 5.47867 5.66043 5.73716 5.99114 6.48333 6.62463 6.79312 7.21553 7.37041 8.84899 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.027623 B = 0.002678 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.414434 B =10454.080632 C =11111.255895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.058 0.942 9 C 0.011 3.989 10 C 0.523 3.477 11 O -0.555 6.555 12 N -0.662 5.662 13 C 0.090 3.910 14 C 0.139 3.861 15 N -0.481 5.481 16 C 0.121 3.879 17 C -0.096 4.096 18 C -0.065 4.065 19 C -0.112 4.112 20 C -0.032 4.032 21 C -0.187 4.187 22 C 0.522 3.478 23 F -0.174 7.174 24 F -0.181 7.181 25 F -0.179 7.179 26 C -0.077 4.077 27 H 0.267 0.733 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.429 0.571 31 H 0.196 0.804 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.015 -20.757 -3.671 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.076 0.924 9 C -0.029 4.029 10 C 0.314 3.686 11 O -0.432 6.432 12 N -0.309 5.309 13 C -0.007 4.007 14 C -0.035 4.035 15 N -0.188 5.188 16 C -0.001 4.001 17 C -0.099 4.099 18 C -0.084 4.084 19 C -0.130 4.130 20 C -0.052 4.052 21 C -0.189 4.189 22 C 0.467 3.533 23 F -0.155 7.155 24 F -0.163 7.163 25 F -0.160 7.160 26 C -0.106 4.106 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.269 0.731 31 H 0.213 0.787 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.191 0.809 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.542 -21.291 -3.251 23.979 hybrid contribution -0.463 1.599 -0.033 1.665 sum 10.079 -19.691 -3.284 22.363 Atomic orbital electron populations 1.70022 1.07070 1.28077 1.51078 1.25732 0.95785 1.02623 0.94523 0.85446 0.78719 0.79110 0.78083 1.19844 1.19901 1.20081 1.21379 0.93778 0.91032 1.51263 0.92375 1.19112 0.94083 0.90015 0.99670 1.21788 0.90356 0.83877 0.72592 1.90546 1.18885 1.84873 1.48900 1.43650 1.10834 1.03590 1.72841 1.19020 0.93669 0.90210 0.97845 1.23279 0.99230 0.86472 0.94510 1.67994 1.03202 1.30329 1.17309 1.18481 0.92711 0.92763 0.96175 1.18806 0.97601 0.93038 1.00419 1.21594 0.91109 1.00637 0.95032 1.21322 1.01323 0.90949 0.99386 1.21292 0.93162 1.00060 0.90660 1.19658 0.99712 0.92573 1.07001 1.17968 0.74204 0.84023 0.77057 1.93152 1.59880 1.68083 1.94416 1.93194 1.95839 1.94349 1.32890 1.93193 1.46295 1.88630 1.87932 1.21787 0.93939 0.98497 0.96412 0.92372 0.93030 0.93180 0.73116 0.78697 0.82598 0.80120 0.80936 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.68 13.29 21.45 0.28 -51.40 16 2 C 0.01 0.68 5.46 84.66 0.46 1.14 16 3 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -29.68 8.92 25.60 0.23 -29.45 16 8 H 0.06 3.38 6.75 -2.91 -0.02 3.36 16 9 C 0.01 0.50 5.46 29.10 0.16 0.66 16 10 C 0.52 21.57 7.58 87.66 0.66 22.24 16 11 O -0.56 -26.41 13.16 -3.08 -0.04 -26.45 16 12 N -0.66 -20.12 5.35 -303.18 -1.62 -21.74 16 13 C 0.09 2.67 6.30 38.26 0.24 2.91 16 14 C 0.14 3.60 11.08 85.25 0.94 4.54 16 15 N -0.48 -13.83 9.24 -188.14 -1.74 -15.57 16 16 C 0.12 3.35 6.51 40.30 0.26 3.62 16 17 C -0.10 -2.57 5.74 -21.28 -0.12 -2.70 16 18 C -0.07 -1.26 9.77 22.32 0.22 -1.04 16 19 C -0.11 -1.54 9.96 22.05 0.22 -1.32 16 20 C -0.03 -0.51 9.36 22.03 0.21 -0.30 16 21 C -0.19 -4.34 5.37 -19.79 -0.11 -4.45 16 22 C 0.52 12.41 2.99 71.23 0.21 12.62 16 23 F -0.17 -3.44 15.94 44.97 0.72 -2.72 16 24 F -0.18 -4.90 16.96 44.97 0.76 -4.14 16 25 F -0.18 -4.67 16.96 44.97 0.76 -3.91 16 26 C -0.08 -2.39 8.51 22.85 0.19 -2.20 16 27 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.43 9.88 8.82 -92.70 -0.82 9.06 16 31 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.17 1.66 7.08 -2.91 -0.02 1.64 16 35 H 0.14 4.79 6.47 -2.91 -0.02 4.77 16 Total: -1.00 -69.80 322.65 5.30 -64.50 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.36 Total: 9.65 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 3.78 Total: 6.27 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.07 Total: -88.71 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.04 Total: -26.45 kcal Atomic # 9 Polarization: -13.01 SS G_CDS: 2.24 Total: -10.77 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -69.80 5.30 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.845 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds