Wall clock time and date at job start Tue Mar 31 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47200 * 270.00355 * 3 2 1 5 5 H 1.48501 * 109.46812 * 29.99994 * 3 2 1 6 6 H 1.48493 * 109.47133 * 149.99845 * 3 2 1 7 7 C 1.37870 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00464 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47049 * 180.02562 * 9 7 2 11 11 O 1.21267 * 120.00229 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99782 * 180.02562 * 10 9 7 13 13 C 1.38764 * 119.99849 * 185.52324 * 12 10 9 14 14 C 1.38593 * 120.12889 * 24.95673 * 13 12 10 15 15 C 1.38389 * 121.33418 * 179.74686 * 14 13 12 16 16 C 1.39115 * 120.34959 * 0.25644 * 15 14 13 17 17 C 1.41424 * 119.30533 * 0.02562 * 16 15 14 18 18 C 1.41374 * 119.39733 * 180.02562 * 17 16 15 19 19 C 1.38780 * 119.18418 * 179.97438 * 18 17 16 20 20 C 1.38865 * 120.16114 * 359.97438 * 19 18 17 21 21 C 1.37655 * 121.38413 * 0.02562 * 20 19 18 22 22 C 1.40287 * 119.96227 * 359.97438 * 21 20 19 23 23 C 1.46991 * 118.69952 * 0.02562 * 18 17 16 24 24 O 1.21621 * 119.82890 * 180.02562 * 23 18 17 25 25 N 1.34641 * 120.33523 * 0.02562 * 23 18 17 26 26 C 1.34607 * 122.41238 * 359.97096 * 25 23 18 27 27 O 1.21662 * 119.77672 * 180.02562 * 26 25 23 28 28 H 0.96998 * 120.00417 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47363 * 60.00419 * 9 7 2 30 30 H 1.08995 * 109.47538 * 299.99965 * 9 7 2 31 31 H 0.97001 * 120.00441 * 5.51610 * 12 10 9 32 32 H 1.08007 * 119.33745 * 0.02593 * 14 13 12 33 33 H 1.07996 * 119.82534 * 180.23923 * 15 14 13 34 34 H 1.07994 * 119.92298 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.31175 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.02293 * 180.02562 * 21 20 19 37 37 H 0.97004 * 118.79537 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 8 3.4228 -3.4229 -0.0010 12 7 1.7813 -4.9152 -0.0011 13 6 2.6778 -5.9680 0.1146 14 6 3.9048 -5.7727 0.7288 15 6 4.8154 -6.8061 0.8622 16 6 4.5168 -8.0737 0.3729 17 6 3.2731 -8.2950 -0.2629 18 6 2.9674 -9.5825 -0.7604 19 6 1.7454 -9.7949 -1.3830 20 6 0.8377 -8.7519 -1.5124 21 6 1.1198 -7.4925 -1.0336 22 6 2.3456 -7.2426 -0.3988 23 6 3.9589 -10.6555 -0.5986 24 8 3.7175 -11.7708 -1.0193 25 7 5.1330 -10.4099 0.0129 26 6 5.4542 -9.1957 0.4972 27 8 6.5294 -9.0272 1.0410 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.8314 -5.0938 -0.0822 32 1 4.1535 -4.7952 1.1151 33 1 5.7630 -6.6276 1.3486 34 1 1.4997 -10.7735 -1.7678 35 1 -0.1094 -8.9326 -1.9990 36 1 0.3975 -6.6974 -1.1458 37 1 5.7713 -11.1343 0.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143200831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:27 Heat of formation + Delta-G solvation = -58.433180 kcal Electronic energy + Delta-G solvation = -25856.891407 eV Core-core repulsion = 21949.887124 eV Total energy + Delta-G solvation = -3907.004283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.01696 -40.46616 -39.13192 -38.88785 -36.33940 -35.32651 -34.70325 -33.20336 -31.96246 -30.72256 -29.83438 -28.59718 -25.40567 -24.76192 -23.46739 -23.44698 -22.97175 -20.48351 -19.29443 -18.93253 -18.22869 -17.84226 -16.90416 -16.63868 -16.31681 -16.21245 -15.75333 -15.37384 -15.14473 -14.72123 -14.65021 -14.44586 -14.20424 -13.88208 -13.69561 -13.36982 -13.03156 -12.99163 -12.31998 -12.30392 -11.93325 -11.47913 -11.34419 -10.96377 -10.88079 -10.81656 -10.69758 -10.51128 -10.44939 -10.16114 -9.55890 -9.52180 -9.18835 -8.97547 -8.62923 -7.77884 -6.26180 -4.27940 -0.44426 0.71410 1.06476 1.65844 2.51220 2.71356 2.77730 3.09058 3.22738 3.24508 3.30106 3.37104 3.73667 3.87144 4.22103 4.30427 4.32447 4.35072 4.60762 4.73855 4.90743 4.94503 5.12999 5.23395 5.32010 5.37893 5.63813 5.69694 5.76578 5.82589 5.86191 6.06844 6.16018 6.24494 6.36158 6.65000 6.75754 6.83916 6.98272 7.13434 7.41462 7.66932 7.76154 7.99961 8.55018 8.82457 9.38762 10.85730 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002937 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.709357 B = 9529.960307 C =10644.988859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.077 0.923 9 C 0.008 3.992 10 C 0.513 3.487 11 O -0.502 6.502 12 N -0.676 5.676 13 C 0.247 3.753 14 C -0.182 4.182 15 C 0.038 3.962 16 C -0.219 4.219 17 C 0.041 3.959 18 C -0.174 4.174 19 C 0.000 4.000 20 C -0.153 4.153 21 C -0.037 4.037 22 C -0.106 4.106 23 C 0.577 3.423 24 O -0.506 6.506 25 N -0.668 5.668 26 C 0.578 3.422 27 O -0.506 6.506 28 H 0.265 0.735 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.413 0.587 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 -18.319 -1.069 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.556 4.556 8 H 0.095 0.905 9 C -0.031 4.031 10 C 0.305 3.695 11 O -0.374 6.374 12 N -0.318 5.318 13 C 0.145 3.855 14 C -0.203 4.203 15 C 0.018 3.982 16 C -0.223 4.223 17 C 0.040 3.960 18 C -0.177 4.177 19 C -0.019 4.019 20 C -0.171 4.171 21 C -0.055 4.055 22 C -0.109 4.109 23 C 0.369 3.631 24 O -0.382 6.382 25 N -0.332 5.332 26 C 0.371 3.629 27 O -0.381 6.381 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.250 0.750 32 H 0.182 0.818 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.019 -18.194 -1.013 18.250 hybrid contribution 0.093 0.452 -0.087 0.469 sum 1.112 -17.742 -1.099 17.811 Atomic orbital electron populations 1.69929 1.06095 1.27363 1.50241 1.24989 0.94939 0.99651 0.94721 0.86385 0.79856 0.82317 0.78331 1.20471 1.21133 1.19533 1.21086 0.94282 0.88754 1.51474 0.90456 1.19339 0.93879 0.89721 1.00178 1.22630 0.91798 0.82541 0.72515 1.90545 1.17782 1.83730 1.45373 1.44284 1.10337 1.05763 1.71427 1.18275 0.91174 0.86398 0.89619 1.21496 0.93692 1.01932 1.03180 1.21277 0.98196 0.89297 0.89455 1.19217 0.95608 0.94996 1.12492 1.17658 0.92503 0.91947 0.93909 1.19390 0.97057 0.92688 1.08541 1.21367 0.90273 0.99708 0.90579 1.21062 1.00644 0.92277 1.03093 1.21525 0.94326 0.97389 0.92270 1.17531 0.96245 0.92675 1.04417 1.18098 0.80991 0.88022 0.76000 1.90855 1.77278 1.23358 1.46677 1.44702 1.19635 1.14082 1.54798 1.18049 0.86333 0.82000 0.76527 1.90869 1.23257 1.83096 1.40886 0.92598 0.92741 0.92521 0.74972 0.81770 0.83621 0.83860 0.84294 0.84478 0.74408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.29 55.43 0.74 -23.54 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.50 8.92 -34.44 -0.31 -13.81 16 8 H 0.08 2.10 6.75 -52.49 -0.35 1.75 16 9 C 0.01 0.17 5.46 -29.03 -0.16 0.01 16 10 C 0.51 9.63 7.61 -10.98 -0.08 9.55 16 11 O -0.50 -10.87 12.60 5.57 0.07 -10.80 16 12 N -0.68 -9.31 5.14 -9.60 -0.05 -9.36 16 13 C 0.25 3.34 6.45 -83.40 -0.54 2.80 16 14 C -0.18 -2.62 8.66 -39.39 -0.34 -2.96 16 15 C 0.04 0.49 9.62 -39.20 -0.38 0.11 16 16 C -0.22 -2.83 5.89 -104.93 -0.62 -3.45 16 17 C 0.04 0.51 5.77 -106.47 -0.61 -0.11 16 18 C -0.17 -1.95 5.88 -104.96 -0.62 -2.57 16 19 C 0.00 0.00 9.64 -39.15 -0.38 -0.38 16 20 C -0.15 -1.16 9.97 -39.56 -0.39 -1.56 16 21 C -0.04 -0.33 9.52 -39.02 -0.37 -0.70 16 22 C -0.11 -1.24 5.74 -106.92 -0.61 -1.86 16 23 C 0.58 6.85 7.89 -12.77 -0.10 6.75 16 24 O -0.51 -6.82 17.30 5.26 0.09 -6.73 16 25 N -0.67 -7.46 5.14 -13.71 -0.07 -7.53 16 26 C 0.58 7.47 7.87 -12.90 -0.10 7.37 16 27 O -0.51 -7.59 17.28 5.22 0.09 -7.50 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.41 4.26 7.30 -40.82 -0.30 3.97 16 32 H 0.17 2.68 5.72 -52.48 -0.30 2.38 16 33 H 0.15 1.73 7.74 -52.49 -0.41 1.32 16 34 H 0.14 1.08 7.75 -52.49 -0.41 0.67 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.14 0.90 6.77 -52.49 -0.36 0.55 16 37 H 0.42 3.85 8.82 -40.82 -0.36 3.49 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -31.72 325.46 -7.84 -39.57 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -2.88 Total: 4.69 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -5.71 Total: 0.65 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.62 Total: -40.43 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.25 Total: -25.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.72 -7.84 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.865 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds