Wall clock time and date at job start Tue Mar 31 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99770 * 2 1 4 4 H 1.48496 * 109.47200 * 270.00355 * 3 2 1 5 5 H 1.48501 * 109.46812 * 29.99994 * 3 2 1 6 6 H 1.48493 * 109.47133 * 149.99845 * 3 2 1 7 7 C 1.37870 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00464 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.50705 * 109.47049 * 180.02562 * 9 7 2 11 11 O 1.21267 * 120.00229 * 359.97438 * 10 9 7 12 12 N 1.34778 * 119.99782 * 180.02562 * 10 9 7 13 13 C 1.38764 * 119.99849 * 185.52324 * 12 10 9 14 14 C 1.38593 * 120.12889 * 24.95673 * 13 12 10 15 15 C 1.38389 * 121.33418 * 179.74686 * 14 13 12 16 16 C 1.39115 * 120.34959 * 0.25644 * 15 14 13 17 17 C 1.41424 * 119.30533 * 0.02562 * 16 15 14 18 18 C 1.41374 * 119.39733 * 180.02562 * 17 16 15 19 19 C 1.38780 * 119.18418 * 179.97438 * 18 17 16 20 20 C 1.38865 * 120.16114 * 359.97438 * 19 18 17 21 21 C 1.37655 * 121.38413 * 0.02562 * 20 19 18 22 22 C 1.40287 * 119.96227 * 359.97438 * 21 20 19 23 23 C 1.46991 * 118.69952 * 0.02562 * 18 17 16 24 24 O 1.21621 * 119.82890 * 180.02562 * 23 18 17 25 25 N 1.34641 * 120.33523 * 0.02562 * 23 18 17 26 26 C 1.34607 * 122.41238 * 359.97096 * 25 23 18 27 27 O 1.21662 * 119.77672 * 180.02562 * 26 25 23 28 28 H 0.96998 * 120.00417 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47363 * 60.00419 * 9 7 2 30 30 H 1.08995 * 109.47538 * 299.99965 * 9 7 2 31 31 H 0.97001 * 120.00441 * 5.51610 * 12 10 9 32 32 H 1.08007 * 119.33745 * 0.02593 * 14 13 12 33 33 H 1.07996 * 119.82534 * 180.23923 * 15 14 13 34 34 H 1.07994 * 119.92298 * 179.97438 * 19 18 17 35 35 H 1.07997 * 119.31175 * 180.02562 * 20 19 18 36 36 H 1.08002 * 120.02293 * 180.02562 * 21 20 19 37 37 H 0.97004 * 118.79537 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 8 3.4228 -3.4229 -0.0010 12 7 1.7813 -4.9152 -0.0011 13 6 2.6778 -5.9680 0.1146 14 6 3.9048 -5.7727 0.7288 15 6 4.8154 -6.8061 0.8622 16 6 4.5168 -8.0737 0.3729 17 6 3.2731 -8.2950 -0.2629 18 6 2.9674 -9.5825 -0.7604 19 6 1.7454 -9.7949 -1.3830 20 6 0.8377 -8.7519 -1.5124 21 6 1.1198 -7.4925 -1.0336 22 6 2.3456 -7.2426 -0.3988 23 6 3.9589 -10.6555 -0.5986 24 8 3.7175 -11.7708 -1.0193 25 7 5.1330 -10.4099 0.0129 26 6 5.4542 -9.1957 0.4972 27 8 6.5294 -9.0272 1.0410 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6248 -2.5571 0.8896 31 1 0.8314 -5.0938 -0.0822 32 1 4.1535 -4.7952 1.1151 33 1 5.7630 -6.6276 1.3486 34 1 1.4997 -10.7735 -1.7678 35 1 -0.1094 -8.9326 -1.9990 36 1 0.3975 -6.6974 -1.1458 37 1 5.7713 -11.1343 0.1072 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143200831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:27 Heat of formation + Delta-G solvation = -79.800516 kcal Electronic energy + Delta-G solvation = -25857.817964 eV Core-core repulsion = 21949.887124 eV Total energy + Delta-G solvation = -3907.930841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.98072 -41.65476 -40.16895 -40.01505 -37.35742 -36.40599 -35.81102 -35.14034 -32.98286 -31.62053 -31.27874 -29.89368 -26.56054 -25.99933 -24.77702 -24.40934 -23.98323 -21.83165 -20.30584 -19.90928 -19.21215 -18.84439 -18.41912 -18.13074 -17.34573 -17.29700 -16.90165 -16.60923 -16.41454 -16.20085 -15.59172 -15.55093 -15.24756 -15.00357 -14.81102 -14.65790 -14.25638 -14.08166 -13.88685 -13.37124 -13.10197 -12.82611 -12.74179 -12.55785 -12.26517 -12.05898 -11.84459 -11.77078 -11.55817 -11.47129 -11.45447 -10.70232 -10.61933 -10.45517 -9.92399 -8.80710 -8.26521 -6.32867 -1.36768 -0.16319 0.12160 0.68426 1.41954 1.43764 1.51251 1.54209 1.58414 1.87933 1.91721 2.02521 2.43370 2.80004 2.93279 3.10839 3.33242 3.41323 3.50205 3.72995 3.86631 3.98790 4.08343 4.28770 4.40116 4.50192 4.54633 4.80846 4.85010 4.89645 4.98403 5.06530 5.15705 5.22175 5.23148 5.28312 5.54082 5.67910 5.69287 5.73123 5.97591 6.15644 6.38704 6.71527 6.79553 7.11680 7.37216 8.84957 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022690 B = 0.002937 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.709357 B = 9529.960307 C =10644.988859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.011 3.989 10 C 0.522 3.478 11 O -0.537 6.537 12 N -0.656 5.656 13 C 0.240 3.760 14 C -0.196 4.196 15 C 0.033 3.967 16 C -0.222 4.222 17 C 0.033 3.967 18 C -0.194 4.194 19 C 0.015 3.985 20 C -0.134 4.134 21 C -0.036 4.036 22 C -0.108 4.108 23 C 0.580 3.420 24 O -0.523 6.523 25 N -0.661 5.661 26 C 0.582 3.418 27 O -0.531 6.531 28 H 0.268 0.732 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.431 0.569 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.181 0.819 36 H 0.164 0.836 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 -19.748 -2.201 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.076 0.924 9 C -0.029 4.029 10 C 0.314 3.686 11 O -0.413 6.413 12 N -0.299 5.299 13 C 0.139 3.861 14 C -0.218 4.218 15 C 0.014 3.986 16 C -0.227 4.227 17 C 0.031 3.969 18 C -0.197 4.197 19 C -0.004 4.004 20 C -0.151 4.151 21 C -0.054 4.054 22 C -0.111 4.111 23 C 0.373 3.627 24 O -0.400 6.400 25 N -0.324 5.324 26 C 0.376 3.624 27 O -0.408 6.408 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.272 0.728 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.182 0.818 37 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.857 -19.677 -2.148 19.813 hybrid contribution 0.599 0.737 0.222 0.976 sum -0.258 -18.940 -1.926 19.039 Atomic orbital electron populations 1.69985 1.06917 1.28138 1.50934 1.25647 0.95736 1.02373 0.94535 0.85563 0.78597 0.79175 0.78441 1.19931 1.20250 1.19962 1.21346 0.93828 0.91054 1.51445 0.92361 1.19147 0.94008 0.89592 1.00112 1.21921 0.90522 0.83659 0.72489 1.90548 1.18847 1.84627 1.47236 1.43696 1.11388 1.04212 1.70628 1.18278 0.90706 0.86917 0.90177 1.21322 0.94814 1.01249 1.04376 1.21238 0.98220 0.89311 0.89879 1.19310 0.96206 0.94737 1.12420 1.17745 0.92256 0.92728 0.94134 1.19452 0.98129 0.91909 1.10191 1.21762 0.89130 1.01058 0.88451 1.21518 1.01514 0.90879 1.01214 1.21891 0.93403 0.98939 0.91171 1.17585 0.97460 0.91302 1.04708 1.18221 0.80987 0.87990 0.75475 1.90849 1.77569 1.23985 1.47568 1.44587 1.19861 1.13770 1.54199 1.18047 0.85867 0.82408 0.76065 1.90857 1.24267 1.83542 1.42175 0.92352 0.92512 0.92633 0.72800 0.84134 0.83311 0.81923 0.80214 0.81821 0.73467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 13.29 21.44 0.28 -49.33 16 2 C 0.02 0.87 5.46 84.65 0.46 1.34 16 3 Si 0.96 42.45 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -28.55 8.92 25.60 0.23 -28.32 16 8 H 0.06 3.26 6.75 -2.91 -0.02 3.24 16 9 C 0.01 0.47 5.46 29.10 0.16 0.63 16 10 C 0.52 19.78 7.61 87.66 0.67 20.45 16 11 O -0.54 -24.04 12.60 -2.99 -0.04 -24.08 16 12 N -0.66 -17.40 5.14 -302.68 -1.56 -18.96 16 13 C 0.24 6.33 6.45 38.90 0.25 6.58 16 14 C -0.20 -5.85 8.66 22.39 0.19 -5.66 16 15 C 0.03 0.90 9.62 22.52 0.22 1.11 16 16 C -0.22 -5.75 5.89 -20.06 -0.12 -5.87 16 17 C 0.03 0.76 5.77 -21.06 -0.12 0.64 16 18 C -0.19 -3.91 5.88 -20.08 -0.12 -4.03 16 19 C 0.01 0.20 9.64 22.55 0.22 0.42 16 20 C -0.13 -1.34 9.97 22.28 0.22 -1.12 16 21 C -0.04 -0.49 9.52 22.63 0.22 -0.27 16 22 C -0.11 -2.31 5.74 -21.35 -0.12 -2.43 16 23 C 0.58 12.90 7.89 86.56 0.68 13.58 16 24 O -0.52 -13.15 17.30 -4.10 -0.07 -13.22 16 25 N -0.66 -14.31 5.14 -433.95 -2.23 -16.54 16 26 C 0.58 15.04 7.87 86.49 0.68 15.72 16 27 O -0.53 -16.18 17.28 -4.23 -0.07 -16.25 16 28 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.43 7.93 7.30 -92.71 -0.68 7.26 16 32 H 0.14 4.91 5.72 -2.91 -0.02 4.89 16 33 H 0.15 3.77 7.74 -2.91 -0.02 3.75 16 34 H 0.16 1.69 7.75 -2.91 -0.02 1.67 16 35 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.16 1.36 6.77 -2.91 -0.02 1.34 16 37 H 0.42 7.64 8.82 -92.71 -0.82 6.82 16 Total: -1.00 -69.56 325.46 1.75 -67.81 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.31 Total: 13.32 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 3.72 Total: 12.76 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -3.50 Total: -84.82 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.18 Total: -53.55 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -69.56 1.75 -67.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143200831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.989 kcal (2) G-P(sol) polarization free energy of solvation -69.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds