Wall clock time and date at job start Tue Mar 31 2020 14:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99797 * 2 1 4 4 H 1.48497 * 109.47119 * 239.99259 * 3 2 1 5 5 H 1.48501 * 109.47236 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46821 * 119.99582 * 3 2 1 7 7 C 1.37869 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00155 * 0.02562 * 7 2 1 10 10 C 1.50706 * 109.47304 * 179.97438 * 9 7 2 11 11 O 1.21283 * 119.99922 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99842 * 179.97438 * 10 9 7 13 13 C 1.39515 * 119.99881 * 184.51429 * 12 10 9 14 14 C 1.37919 * 120.32065 * 325.25976 * 13 12 10 15 15 C 1.39090 * 120.62979 * 179.97438 * 14 13 12 16 16 C 1.50704 * 119.41452 * 179.74561 * 15 14 13 17 17 F 1.39903 * 109.47177 * 180.02562 * 16 15 14 18 18 F 1.39894 * 109.47152 * 300.02456 * 16 15 14 19 19 F 1.39903 * 109.46899 * 60.02138 * 16 15 14 20 20 C 1.36186 * 121.17404 * 359.76804 * 15 14 13 21 21 C 1.40518 * 120.05078 * 0.02562 * 20 15 14 22 22 N 1.33743 * 120.99347 * 179.97438 * 21 20 15 23 23 C 1.31117 * 121.31263 * 180.02562 * 22 21 20 24 24 C 1.39253 * 121.74153 * 359.97438 * 23 22 21 25 25 C 1.36676 * 119.91481 * 359.97438 * 24 23 22 26 26 C 1.40543 * 118.17112 * 0.04145 * 25 24 23 27 27 H 0.96997 * 120.00096 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.47382 * 59.99448 * 9 7 2 29 29 H 1.09003 * 109.47234 * 299.99333 * 9 7 2 30 30 H 0.97004 * 120.00442 * 4.50692 * 12 10 9 31 31 H 1.08001 * 119.68427 * 359.72891 * 14 13 12 32 32 H 1.08001 * 119.97472 * 179.97438 * 20 15 14 33 33 H 1.08002 * 119.12440 * 179.97438 * 23 22 21 34 34 H 1.08001 * 120.04316 * 180.02562 * 24 23 22 35 35 H 1.07998 * 120.91307 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 8 3.4228 -3.4230 0.0001 12 7 1.7811 -4.9152 0.0011 13 6 2.6842 -5.9744 0.0962 14 6 3.9272 -5.8847 -0.4947 15 6 4.8327 -6.9366 -0.4034 16 6 6.1813 -6.8116 -1.0643 17 9 6.9187 -7.9799 -0.8439 18 9 6.0108 -6.6204 -2.4396 19 9 6.8664 -5.7185 -0.5230 20 6 4.5221 -8.0776 0.2721 21 6 3.2682 -8.2088 0.8925 22 7 2.9432 -9.3211 1.5603 23 6 1.7748 -9.4504 2.1411 24 6 0.8170 -8.4408 2.0929 25 6 1.0857 -7.2776 1.4275 26 6 2.3390 -7.1429 0.8060 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5570 -0.8897 29 1 0.6241 -2.5567 0.8904 30 1 0.8298 -5.0934 -0.0646 31 1 4.1985 -4.9909 -1.0367 32 1 5.2399 -8.8825 0.3304 33 1 1.5494 -10.3643 2.6707 34 1 -0.1366 -8.5763 2.5815 35 1 0.3548 -6.4838 1.3803 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:31 Heat of formation + Delta-G solvation = -131.709076 kcal Electronic energy + Delta-G solvation = -26627.177699 eV Core-core repulsion = 22175.139194 eV Total energy + Delta-G solvation = -4452.038505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.16574 -47.70213 -47.57695 -41.30298 -39.38284 -37.22958 -35.13947 -33.11981 -32.70978 -31.35639 -30.07046 -28.49820 -26.59302 -24.58986 -23.93784 -23.14623 -21.83785 -20.21927 -19.21111 -18.46351 -18.42393 -17.86919 -17.24264 -16.65971 -16.33364 -16.09269 -15.57462 -14.90976 -14.60150 -14.56350 -14.46272 -14.41348 -14.33464 -14.04710 -13.91155 -13.76678 -13.75607 -13.38137 -13.06373 -12.69892 -12.30751 -12.20978 -12.15602 -11.63029 -11.45121 -10.98516 -10.92624 -10.73139 -10.10636 -9.90073 -9.78704 -9.46649 -9.17647 -8.95713 -8.55892 -7.86485 -6.19396 -4.20476 0.06428 0.47160 1.66999 2.50748 2.56992 3.22593 3.30393 3.32921 3.33282 3.40764 3.59870 3.79504 3.94226 4.23848 4.37743 4.40762 4.41361 4.50167 4.66063 4.75730 4.96245 5.15267 5.19551 5.35322 5.47499 5.55022 5.77676 5.81279 6.01370 6.13206 6.15708 6.38248 6.79960 6.93901 7.07791 7.57438 7.62766 7.83442 8.10871 8.73620 8.89910 9.45628 10.92601 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.004024 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.050728 B = 6956.469204 C = 8990.804926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.010 3.990 10 C 0.513 3.487 11 O -0.512 6.512 12 N -0.684 5.684 13 C 0.192 3.808 14 C -0.107 4.107 15 C -0.131 4.131 16 C 0.510 3.490 17 F -0.178 7.178 18 F -0.174 7.174 19 F -0.169 7.169 20 C -0.073 4.073 21 C 0.140 3.860 22 N -0.468 5.468 23 C 0.134 3.866 24 C -0.171 4.171 25 C -0.052 4.052 26 C -0.104 4.104 27 H 0.264 0.736 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.411 0.589 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -19.325 1.508 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.094 0.906 9 C -0.029 4.029 10 C 0.305 3.695 11 O -0.385 6.385 12 N -0.330 5.330 13 C 0.094 3.906 14 C -0.128 4.128 15 C -0.135 4.135 16 C 0.456 3.544 17 F -0.159 7.159 18 F -0.155 7.155 19 F -0.150 7.150 20 C -0.092 4.092 21 C 0.018 3.982 22 N -0.176 5.176 23 C -0.039 4.039 24 C -0.191 4.191 25 C -0.078 4.078 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.247 0.753 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.243 -19.519 1.477 19.842 hybrid contribution -0.600 1.495 -0.076 1.613 sum 2.643 -18.024 1.401 18.271 Atomic orbital electron populations 1.69933 1.06068 1.27337 1.50463 1.24986 0.94932 0.99582 0.94820 0.86447 0.79393 0.82010 0.79012 1.19985 1.21254 1.20020 1.21069 0.94269 0.88830 1.51199 0.90551 1.19294 0.93869 0.89789 0.99991 1.22544 0.91741 0.82627 0.72607 1.90573 1.17812 1.83784 1.46330 1.44153 1.09747 1.05111 1.73958 1.17510 0.91521 0.87436 0.94145 1.20941 0.92939 0.98931 1.00023 1.19501 0.93773 0.97104 1.03074 1.18199 0.85520 0.73847 0.76852 1.93159 1.79293 1.48947 1.94525 1.93224 1.95559 1.94919 1.31792 1.93263 1.81461 1.54634 1.85650 1.20468 0.95730 0.97057 0.95995 1.18372 0.93500 0.89585 0.96711 1.68083 1.19190 1.22361 1.08002 1.22998 0.88290 0.98457 0.94191 1.21909 1.01584 0.94472 1.01179 1.21411 0.94899 0.97763 0.93714 1.18799 0.96397 0.95610 1.00006 0.92640 0.92802 0.92868 0.75259 0.82417 0.83278 0.82065 0.84062 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.29 55.43 0.74 -24.34 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.08 8.92 -34.44 -0.31 -14.39 16 8 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 9 C 0.01 0.22 5.46 -29.03 -0.16 0.07 16 10 C 0.51 10.54 7.66 -10.98 -0.08 10.45 16 11 O -0.51 -12.12 12.89 5.55 0.07 -12.05 16 12 N -0.68 -10.62 4.99 -9.66 -0.05 -10.67 16 13 C 0.19 2.95 6.32 -83.43 -0.53 2.42 16 14 C -0.11 -1.74 8.19 -39.38 -0.32 -2.06 16 15 C -0.13 -1.88 5.33 -105.04 -0.56 -2.44 16 16 C 0.51 7.10 3.30 36.01 0.12 7.21 16 17 F -0.18 -2.24 15.89 2.25 0.04 -2.20 16 18 F -0.17 -2.46 17.23 2.25 0.04 -2.42 16 19 F -0.17 -2.60 17.23 2.25 0.04 -2.57 16 20 C -0.07 -0.96 9.34 -39.46 -0.37 -1.33 16 21 C 0.14 1.88 6.60 -84.87 -0.56 1.32 16 22 N -0.47 -5.73 10.35 -11.00 -0.11 -5.84 16 23 C 0.13 1.21 11.14 -17.48 -0.19 1.02 16 24 C -0.17 -1.43 10.03 -39.77 -0.40 -1.83 16 25 C -0.05 -0.54 9.55 -39.28 -0.38 -0.91 16 26 C -0.10 -1.39 5.75 -106.67 -0.61 -2.00 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.41 4.95 7.67 -40.82 -0.31 4.64 16 31 H 0.16 2.91 6.18 -52.49 -0.32 2.58 16 32 H 0.15 1.72 7.06 -52.49 -0.37 1.35 16 33 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 1.20 6.98 -52.49 -0.37 0.84 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -31.49 321.13 -6.43 -37.92 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -2.55 Total: 1.94 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -4.45 Total: -0.97 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.57 Total: -40.85 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.11 Total: -7.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.49 -6.43 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.789 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds