Wall clock time and date at job start Tue Mar 31 2020 13:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45204 * 109.47271 * 2 1 4 4 C 1.34224 * 116.99952 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46995 * 183.78254 * 6 4 3 8 8 C 1.46898 * 110.99946 * 64.31214 * 7 6 4 9 9 C 1.50691 * 109.47621 * 71.66167 * 8 7 6 10 10 H 1.08000 * 120.00004 * 355.48058 * 9 8 7 11 11 C 1.37877 * 120.00330 * 175.48394 * 9 8 7 12 12 N 1.31516 * 120.00238 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99816 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46626 * 90.00513 * 13 11 9 15 15 H 1.48502 * 109.47214 * 210.00077 * 13 11 9 16 16 H 1.48502 * 109.47190 * 330.00479 * 13 11 9 17 17 C 1.38467 * 111.00206 * 300.34982 * 7 6 4 18 18 N 1.32733 * 120.15020 * 109.16613 * 17 7 6 19 19 C 1.32099 * 120.01395 * 179.97438 * 18 17 7 20 20 C 1.38807 * 120.33645 * 0.02562 * 19 18 17 21 21 Cl 1.73593 * 119.84519 * 179.97438 * 20 19 18 22 22 N 1.31916 * 120.31361 * 0.02562 * 20 19 18 23 23 C 1.33083 * 119.97783 * 359.97438 * 22 20 19 24 24 C 1.43192 * 120.16769 * 179.97438 * 23 22 20 25 25 N 6.62481 * 120.60066 * 27.73558 * 2 1 3 26 26 H 1.09002 * 109.47014 * 299.99986 * 1 2 3 27 27 H 1.09001 * 109.47349 * 59.99829 * 1 2 3 28 28 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46891 * 240.00375 * 2 1 3 30 30 H 1.08992 * 109.47524 * 120.00358 * 2 1 3 31 31 H 1.09003 * 109.46198 * 63.78565 * 6 4 3 32 32 H 1.08993 * 109.47170 * 303.78373 * 6 4 3 33 33 H 1.09006 * 109.46783 * 191.66656 * 8 7 6 34 34 H 1.09004 * 109.46657 * 311.65859 * 8 7 6 35 35 H 0.97001 * 120.00142 * 179.97438 * 12 11 9 36 36 H 1.07994 * 119.83266 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3850 2.8615 -0.0906 8 6 5.8034 2.2713 -1.3691 9 6 5.5473 3.2528 -2.4834 10 1 5.0502 4.1887 -2.2750 11 6 5.9474 2.9562 -3.7690 12 7 5.7244 3.8131 -4.7415 13 14 6.8078 1.3377 -4.1294 14 1 5.7967 0.3052 -4.4714 15 1 7.7392 1.5159 -5.2722 16 1 7.5712 0.9053 -2.9313 17 6 5.9124 2.1563 0.9779 18 7 6.4308 0.9491 0.7892 19 6 6.9338 0.2789 1.8104 20 6 6.9234 0.8302 3.0842 21 17 7.5871 -0.0620 4.4172 22 7 6.4105 2.0286 3.2869 23 6 5.9005 2.7148 2.2670 24 6 5.3423 4.0157 2.4824 25 7 4.9023 5.0471 2.6538 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.6396 3.4471 0.9216 32 1 3.5320 3.4910 -0.8546 33 1 6.8670 2.0356 -1.3296 34 1 5.2356 1.3587 -1.5510 35 1 6.0062 3.6045 -5.6459 36 1 7.3544 -0.7033 1.6536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:12 Heat of formation + Delta-G solvation = 23.776437 kcal Electronic energy + Delta-G solvation = -25381.120843 eV Core-core repulsion = 21507.541337 eV Total energy + Delta-G solvation = -3873.579505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72672 -40.33818 -37.90071 -36.91132 -36.64245 -35.92614 -34.22790 -32.78501 -31.87658 -30.93257 -28.97166 -27.00435 -25.89195 -23.80329 -23.19224 -21.69666 -20.59257 -19.84663 -18.40699 -17.81940 -17.44846 -16.66272 -16.40415 -16.05204 -15.87034 -15.58111 -14.65300 -14.48369 -14.08234 -14.06400 -13.54229 -13.34010 -13.21948 -12.93918 -12.85754 -12.52538 -12.31899 -12.15205 -11.91212 -11.78108 -11.66635 -11.60857 -11.54658 -11.14864 -10.93486 -10.88287 -10.61540 -10.43911 -10.00059 -9.82457 -9.47073 -9.30294 -8.72421 -8.15602 -6.20947 -4.22354 0.13777 0.74312 1.39866 2.30673 2.58306 2.67023 2.79510 3.22893 3.24590 3.30462 3.36336 3.46761 3.72551 4.04696 4.31069 4.32924 4.71429 4.72133 4.85503 4.87029 4.94839 5.10186 5.13554 5.20172 5.49041 5.59111 5.67948 5.70591 5.86779 6.22791 6.46711 6.65749 6.77999 7.07305 7.12711 7.34487 7.46227 7.59846 7.85341 8.34357 8.81146 9.37657 10.90731 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.005444 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.428177 B = 5142.075701 C = 6225.855414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.430 3.570 5 O -0.486 6.486 6 C 0.072 3.928 7 N -0.437 5.437 8 C 0.156 3.844 9 C -0.530 4.530 10 H 0.084 0.916 11 C 0.079 3.921 12 N -0.891 5.891 13 Si 0.870 3.130 14 H -0.275 1.275 15 H -0.284 1.284 16 H -0.260 1.260 17 C 0.329 3.671 18 N -0.411 5.411 19 C 0.133 3.867 20 C 0.091 3.909 21 Cl -0.014 7.014 22 N -0.386 5.386 23 C 0.136 3.864 24 C 0.279 3.721 25 N -0.374 5.374 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.152 0.848 33 H 0.048 0.952 34 H 0.032 0.968 35 H 0.267 0.733 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -10.187 13.737 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.273 6.273 4 C 0.271 3.729 5 O -0.373 6.373 6 C -0.056 4.056 7 N -0.153 5.153 8 C 0.032 3.968 9 C -0.568 4.568 10 H 0.102 0.898 11 C -0.125 4.125 12 N -0.528 5.528 13 Si 0.696 3.304 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.184 1.184 17 C 0.094 3.906 18 N -0.128 5.128 19 C -0.034 4.034 20 C -0.080 4.080 21 Cl 0.014 6.986 22 N -0.104 5.104 23 C -0.009 4.009 24 C -0.039 4.039 25 N -0.051 5.051 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.170 0.830 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.937 -8.426 13.827 16.664 hybrid contribution 0.660 -2.179 -0.310 2.297 sum -3.277 -10.604 13.517 17.490 Atomic orbital electron populations 1.21795 0.92735 1.02751 1.03567 1.22984 0.95261 0.80552 1.02457 1.86518 1.24582 1.32200 1.84022 1.24983 0.81064 0.94043 0.72818 1.90749 1.59583 1.42648 1.44280 1.22125 0.84935 0.90978 1.07520 1.59625 1.06286 1.45370 1.04041 1.20608 0.97967 0.95542 0.82670 1.20936 1.40582 1.04843 0.90426 0.89800 1.24771 0.95108 0.96674 0.95911 1.69872 1.46560 1.35427 1.00938 0.86926 0.80426 0.84302 0.78717 1.20088 1.20988 1.18388 1.21006 0.92131 0.87106 0.90406 1.69124 1.08175 1.03945 1.31587 1.23894 0.92566 1.00760 0.86206 1.22538 1.02671 0.92575 0.90253 1.98412 1.82818 1.71092 1.46265 1.67427 1.04889 1.05559 1.32518 1.16621 1.04504 0.90754 0.89069 1.24159 0.94229 0.91572 0.93914 1.81161 1.07709 1.09789 1.06454 0.91616 0.91267 0.90438 0.91082 0.91645 0.87509 0.83008 0.93378 0.95038 0.92323 0.79891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.15 0.38 -0.99 16 2 C 0.06 0.75 6.19 37.15 0.23 0.98 16 3 O -0.36 -5.38 10.22 -39.24 -0.40 -5.78 16 4 C 0.43 7.34 7.20 36.01 0.26 7.60 16 5 O -0.49 -9.10 11.50 -18.75 -0.22 -9.32 16 6 C 0.07 1.22 5.55 -4.97 -0.03 1.19 16 7 N -0.44 -8.50 4.25 -175.57 -0.75 -9.25 16 8 C 0.16 3.55 2.82 -4.98 -0.01 3.54 16 9 C -0.53 -13.93 9.16 -34.44 -0.32 -14.24 16 10 H 0.08 2.34 7.60 -52.49 -0.40 1.95 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 13 Si 0.87 20.74 27.56 -169.99 -4.69 16.06 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.26 -6.02 6.41 56.52 0.36 -5.66 16 17 C 0.33 5.79 4.73 -154.74 -0.73 5.06 16 18 N -0.41 -7.03 7.24 -11.93 -0.09 -7.11 16 19 C 0.13 1.74 11.00 -17.23 -0.19 1.55 16 20 C 0.09 1.18 7.28 -17.30 -0.13 1.06 16 21 Cl -0.01 -0.14 29.12 -51.86 -1.51 -1.65 16 22 N -0.39 -5.72 10.40 -7.88 -0.08 -5.80 16 23 C 0.14 2.17 6.52 -84.55 -0.55 1.62 16 24 C 0.28 4.51 13.09 -22.53 -0.29 4.22 16 25 N -0.37 -6.29 18.53 41.77 0.77 -5.52 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.11 1.59 6.20 -51.93 -0.32 1.27 16 32 H 0.15 2.63 7.08 -51.93 -0.37 2.27 16 33 H 0.05 1.15 6.33 -51.93 -0.33 0.82 16 34 H 0.03 0.75 5.41 -51.93 -0.28 0.47 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 332.36 15.07 5.01 5.01 Total: -1.00 -30.55 332.36 -6.05 -36.61 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.41 Total: -1.77 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -1.48 Total: 13.65 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.63 Total: -52.80 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.62 Total: -15.10 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.69 Total: 16.06 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.51 Total: -1.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.55 -6.05 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.383 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds