Wall clock time and date at job start Tue Mar 31 2020 13:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45204 * 109.47271 * 2 1 4 4 C 1.34224 * 116.99952 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00102 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.46995 * 183.78254 * 6 4 3 8 8 C 1.46898 * 110.99946 * 64.31214 * 7 6 4 9 9 C 1.50691 * 109.47621 * 71.66167 * 8 7 6 10 10 H 1.08000 * 120.00004 * 355.48058 * 9 8 7 11 11 C 1.37877 * 120.00330 * 175.48394 * 9 8 7 12 12 N 1.31516 * 120.00238 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99816 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46626 * 90.00513 * 13 11 9 15 15 H 1.48502 * 109.47214 * 210.00077 * 13 11 9 16 16 H 1.48502 * 109.47190 * 330.00479 * 13 11 9 17 17 C 1.38467 * 111.00206 * 300.34982 * 7 6 4 18 18 N 1.32733 * 120.15020 * 109.16613 * 17 7 6 19 19 C 1.32099 * 120.01395 * 179.97438 * 18 17 7 20 20 C 1.38807 * 120.33645 * 0.02562 * 19 18 17 21 21 Cl 1.73593 * 119.84519 * 179.97438 * 20 19 18 22 22 N 1.31916 * 120.31361 * 0.02562 * 20 19 18 23 23 C 1.33083 * 119.97783 * 359.97438 * 22 20 19 24 24 C 1.43192 * 120.16769 * 179.97438 * 23 22 20 25 25 N 6.62481 * 120.60066 * 27.73558 * 2 1 3 26 26 H 1.09002 * 109.47014 * 299.99986 * 1 2 3 27 27 H 1.09001 * 109.47349 * 59.99829 * 1 2 3 28 28 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46891 * 240.00375 * 2 1 3 30 30 H 1.08992 * 109.47524 * 120.00358 * 2 1 3 31 31 H 1.09003 * 109.46198 * 63.78565 * 6 4 3 32 32 H 1.08993 * 109.47170 * 303.78373 * 6 4 3 33 33 H 1.09006 * 109.46783 * 191.66656 * 8 7 6 34 34 H 1.09004 * 109.46657 * 311.65859 * 8 7 6 35 35 H 0.97001 * 120.00142 * 179.97438 * 12 11 9 36 36 H 1.07994 * 119.83266 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3850 2.8615 -0.0906 8 6 5.8034 2.2713 -1.3691 9 6 5.5473 3.2528 -2.4834 10 1 5.0502 4.1887 -2.2750 11 6 5.9474 2.9562 -3.7690 12 7 5.7244 3.8131 -4.7415 13 14 6.8078 1.3377 -4.1294 14 1 5.7967 0.3052 -4.4714 15 1 7.7392 1.5159 -5.2722 16 1 7.5712 0.9053 -2.9313 17 6 5.9124 2.1563 0.9779 18 7 6.4308 0.9491 0.7892 19 6 6.9338 0.2789 1.8104 20 6 6.9234 0.8302 3.0842 21 17 7.5871 -0.0620 4.4172 22 7 6.4105 2.0286 3.2869 23 6 5.9005 2.7148 2.2670 24 6 5.3423 4.0157 2.4824 25 7 4.9023 5.0471 2.6538 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 3.6396 3.4471 0.9216 32 1 3.5320 3.4910 -0.8546 33 1 6.8670 2.0356 -1.3296 34 1 5.2356 1.3587 -1.5510 35 1 6.0062 3.6045 -5.6459 36 1 7.3544 -0.7033 1.6536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:11 Heat of formation + Delta-G solvation = 3.801759 kcal Electronic energy + Delta-G solvation = -25381.987010 eV Core-core repulsion = 21507.541337 eV Total energy + Delta-G solvation = -3874.445672 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.98008 -41.59541 -39.18958 -38.05808 -37.79563 -37.23939 -35.46251 -34.78156 -32.82853 -32.23444 -30.59933 -28.50813 -27.07961 -25.15959 -24.38460 -23.11426 -21.97108 -21.06558 -19.79303 -19.22595 -18.82498 -18.21295 -17.74028 -17.27612 -17.12646 -16.81120 -16.29360 -15.74778 -15.68002 -15.20549 -14.76379 -14.63249 -14.48293 -14.44289 -14.20531 -13.71155 -13.62462 -13.36599 -13.24782 -13.05833 -12.89356 -12.77592 -12.63517 -12.53357 -12.44834 -12.27909 -12.05020 -11.82489 -11.65562 -11.55603 -10.93481 -10.75738 -10.56409 -9.54399 -8.31743 -6.36546 -1.03850 -0.42771 0.35716 0.97681 1.32381 1.34482 1.37003 1.48156 1.48473 1.57832 2.00633 2.17943 2.32371 2.47703 2.91578 3.01568 3.10696 3.54436 3.58965 3.68850 3.83194 3.97545 4.05547 4.20072 4.30457 4.51133 4.68205 4.77128 4.88616 4.90203 5.09026 5.31335 5.34839 5.40815 5.53946 5.79303 6.08572 6.29427 6.32407 6.56382 6.68920 7.26669 8.83142 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009090 B = 0.005444 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.428177 B = 5142.075701 C = 6225.855414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.432 3.568 5 O -0.503 6.503 6 C 0.071 3.929 7 N -0.451 5.451 8 C 0.177 3.823 9 C -0.527 4.527 10 H 0.054 0.946 11 C 0.025 3.975 12 N -0.936 5.936 13 Si 0.929 3.071 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.247 1.247 17 C 0.315 3.685 18 N -0.439 5.439 19 C 0.144 3.856 20 C 0.103 3.897 21 Cl 0.019 6.981 22 N -0.392 5.392 23 C 0.132 3.868 24 C 0.287 3.713 25 N -0.391 5.391 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.040 0.960 34 H 0.026 0.974 35 H 0.269 0.731 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 -12.692 15.496 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.274 3.726 5 O -0.391 6.391 6 C -0.056 4.056 7 N -0.168 5.168 8 C 0.052 3.948 9 C -0.565 4.565 10 H 0.072 0.928 11 C -0.174 4.174 12 N -0.575 5.575 13 Si 0.753 3.247 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.171 1.171 17 C 0.080 3.920 18 N -0.156 5.156 19 C -0.023 4.023 20 C -0.070 4.070 21 Cl 0.047 6.953 22 N -0.110 5.110 23 C -0.011 4.011 24 C -0.030 4.030 25 N -0.069 5.069 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.551 -10.912 15.618 19.381 hybrid contribution 0.520 -1.499 -0.679 1.726 sum -3.031 -12.411 14.939 19.657 Atomic orbital electron populations 1.21824 0.90115 1.04509 1.03712 1.23317 0.97301 0.79007 1.02411 1.86515 1.23387 1.34165 1.83497 1.24846 0.81663 0.93642 0.72491 1.90722 1.60108 1.43014 1.45226 1.22112 0.84126 0.91445 1.07896 1.59465 1.07594 1.46349 1.03352 1.20132 0.97232 0.94100 0.83318 1.21165 1.39263 1.04365 0.91740 0.92787 1.25564 0.96036 0.99966 0.95849 1.70000 1.48435 1.37613 1.01467 0.85972 0.79538 0.80250 0.78910 1.19603 1.20601 1.17069 1.20841 0.93148 0.87778 0.90195 1.69062 1.09024 1.04073 1.33432 1.24508 0.90895 1.01512 0.85349 1.22839 1.00917 0.91858 0.91371 1.98434 1.82087 1.70071 1.44717 1.67510 1.05197 1.06336 1.31963 1.16403 1.05204 0.90693 0.88779 1.24236 0.93811 0.91570 0.93384 1.81162 1.08382 1.10233 1.07082 0.90954 0.91623 0.87828 0.91908 0.90935 0.85685 0.84201 0.94153 0.95634 0.92219 0.76026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 10.29 71.98 0.74 -1.59 16 2 C 0.05 1.24 6.19 71.98 0.45 1.68 16 3 O -0.36 -10.69 10.22 -51.36 -0.52 -11.22 16 4 C 0.43 14.70 7.20 71.24 0.51 15.21 16 5 O -0.50 -18.49 11.50 21.96 0.25 -18.24 16 6 C 0.07 2.47 5.55 85.56 0.47 2.95 16 7 N -0.45 -17.72 4.25 -709.37 -3.02 -20.73 16 8 C 0.18 8.13 2.82 85.55 0.24 8.37 16 9 C -0.53 -28.47 9.16 25.60 0.23 -28.24 16 10 H 0.05 3.17 7.60 -2.91 -0.02 3.15 16 11 C 0.03 1.40 5.47 84.65 0.46 1.87 16 12 N -0.94 -55.84 13.96 21.45 0.30 -55.55 16 13 Si 0.93 42.82 27.56 68.60 1.89 44.71 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.25 -10.80 6.41 99.48 0.64 -10.16 16 17 C 0.31 10.86 4.73 133.48 0.63 11.49 16 18 N -0.44 -14.26 7.24 -191.67 -1.39 -15.64 16 19 C 0.14 3.36 11.00 84.79 0.93 4.30 16 20 C 0.10 2.37 7.28 84.82 0.62 2.99 16 21 Cl 0.02 0.32 29.12 -2.72 -0.08 0.24 16 22 N -0.39 -10.84 10.40 -178.84 -1.86 -12.71 16 23 C 0.13 4.11 6.52 40.75 0.27 4.37 16 24 C 0.29 9.20 13.09 88.35 1.16 10.36 16 25 N -0.39 -13.12 18.53 18.98 0.35 -12.77 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 31 H 0.13 3.77 6.20 -2.39 -0.01 3.76 16 32 H 0.14 5.11 7.08 -2.39 -0.02 5.10 16 33 H 0.04 1.91 6.33 -2.38 -0.02 1.89 16 34 H 0.03 1.22 5.41 -2.38 -0.01 1.20 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.22 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -66.50 332.36 3.72 -62.78 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.08 Total: 5.38 kcal Atomic # 6 Polarization: 27.03 SS G_CDS: 6.72 Total: 33.74 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -5.61 Total: -117.40 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.27 Total: -29.46 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.89 Total: 44.71 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -0.08 Total: 0.24 kcal Total: -66.50 3.72 -62.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.587 kcal (2) G-P(sol) polarization free energy of solvation -66.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds