Wall clock time and date at job start Tue Mar 31 2020 13:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47096 * 2 1 4 4 C 1.34230 * 116.99824 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00048 * 354.84859 * 4 3 2 6 6 C 1.50707 * 119.99954 * 174.85018 * 4 3 2 7 7 N 1.46891 * 109.47002 * 185.92163 * 6 4 3 8 8 C 1.46907 * 111.00022 * 200.09330 * 7 6 4 9 9 C 1.50694 * 109.47096 * 170.00248 * 8 7 6 10 10 H 1.08002 * 120.00506 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99782 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99889 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47140 * 90.00047 * 13 11 9 15 15 H 1.48504 * 109.47127 * 210.00038 * 13 11 9 16 16 H 1.48498 * 109.47133 * 329.99703 * 13 11 9 17 17 C 1.38002 * 111.00162 * 76.14067 * 7 6 4 18 18 N 1.32906 * 120.63019 * 57.09537 * 17 7 6 19 19 C 1.31853 * 120.83593 * 179.97438 * 18 17 7 20 20 Cl 1.73599 * 118.90119 * 180.02562 * 19 18 17 21 21 N 1.32075 * 122.19269 * 359.97438 * 19 18 17 22 22 C 1.32210 * 121.18232 * 359.74574 * 21 19 18 23 23 C 1.39778 * 119.00659 * 0.53033 * 22 21 19 24 24 C 1.43209 * 120.97972 * 179.73636 * 23 22 21 25 25 N 5.53510 * 130.26194 * 355.81814 * 3 1 2 26 26 H 1.09004 * 109.46725 * 60.00516 * 1 2 3 27 27 H 1.08995 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47085 * 300.00679 * 1 2 3 29 29 H 1.08996 * 109.47482 * 239.99921 * 2 1 3 30 30 H 1.08998 * 109.47146 * 119.99368 * 2 1 3 31 31 H 1.08998 * 109.47168 * 65.91772 * 6 4 3 32 32 H 1.08999 * 109.46675 * 305.92443 * 6 4 3 33 33 H 1.09003 * 109.46678 * 290.00249 * 8 7 6 34 34 H 1.08994 * 109.46697 * 49.99429 * 8 7 6 35 35 H 0.97005 * 119.99700 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.50001 * 180.29051 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0803 0.5908 0.0930 6 6 3.9215 2.9323 -0.1177 7 7 5.3830 2.8465 -0.2369 8 6 6.0161 4.1232 0.1200 9 6 7.5072 3.9323 0.2251 10 1 7.9413 2.9599 0.0452 11 6 8.3175 4.9993 0.5509 12 7 7.7891 6.1836 0.7695 13 14 10.1658 4.7627 0.6819 14 1 10.7917 5.0114 -0.6416 15 1 10.7177 5.7164 1.6775 16 1 10.4574 3.3722 1.1140 17 6 5.7533 2.4485 -1.5053 18 7 5.3680 3.1414 -2.5720 19 6 5.7199 2.7651 -3.7857 20 17 5.1891 3.7077 -5.1434 21 7 6.4635 1.6954 -4.0028 22 6 6.8974 0.9486 -3.0018 23 6 6.5487 1.2987 -1.6943 24 6 6.9906 0.5166 -0.5790 25 7 7.3406 -0.1040 0.3080 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.6625 3.5095 0.7698 32 1 3.5129 3.4220 -1.0016 33 1 5.7979 4.8644 -0.6488 34 1 5.6254 4.4672 1.0776 35 1 8.3592 6.9344 0.9984 36 1 7.5088 0.0788 -3.1917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:06 Heat of formation + Delta-G solvation = 8.934865 kcal Electronic energy + Delta-G solvation = -25205.130702 eV Core-core repulsion = 21330.907618 eV Total energy + Delta-G solvation = -3874.223084 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27713 -40.20657 -37.65220 -36.80670 -36.16943 -35.96055 -33.32209 -32.72086 -31.95335 -31.47852 -28.74645 -26.49927 -25.08033 -24.17691 -23.18524 -21.72415 -20.82326 -18.98038 -18.17816 -17.73873 -17.47377 -16.62523 -16.36337 -15.84371 -15.59467 -15.08976 -14.66743 -14.34461 -14.09320 -13.75098 -13.34027 -13.16802 -12.99028 -12.91397 -12.51188 -12.32445 -12.19240 -11.91408 -11.71018 -11.66575 -11.59107 -11.44581 -11.37748 -10.99892 -10.90554 -10.58447 -10.53112 -10.31922 -10.19099 -9.58910 -9.42516 -9.08968 -8.70499 -8.21908 -6.25363 -4.29141 0.44595 0.98358 1.41759 2.36727 2.62044 3.12591 3.20887 3.22917 3.28713 3.34263 3.74490 4.03203 4.10628 4.19361 4.30710 4.61675 4.74927 4.79880 4.90274 4.96858 5.12833 5.14551 5.25400 5.44949 5.53523 5.55873 5.62540 5.80390 5.90524 6.47546 6.59432 6.69621 6.90301 7.27442 7.50787 7.75919 7.79628 7.92735 8.01112 8.06571 8.74421 9.36613 10.84716 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.005420 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.663230 B = 5165.173764 C = 6331.798654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.362 6.362 4 C 0.454 3.546 5 O -0.484 6.484 6 C 0.061 3.939 7 N -0.479 5.479 8 C 0.199 3.801 9 C -0.525 4.525 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.887 5.887 13 Si 0.895 3.105 14 H -0.278 1.278 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.447 3.553 18 N -0.532 5.532 19 C 0.392 3.608 20 Cl 0.022 6.978 21 N -0.516 5.516 22 C 0.206 3.794 23 C -0.089 4.089 24 C 0.287 3.713 25 N -0.399 5.399 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.051 0.949 35 H 0.266 0.734 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 -7.984 -7.889 16.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.280 6.280 4 C 0.295 3.705 5 O -0.369 6.369 6 C -0.067 4.067 7 N -0.204 5.204 8 C 0.078 3.922 9 C -0.563 4.563 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.525 5.525 13 Si 0.722 3.278 14 H -0.204 1.204 15 H -0.208 1.208 16 H -0.195 1.195 17 C 0.207 3.793 18 N -0.253 5.253 19 C 0.097 3.903 20 Cl 0.049 6.951 21 N -0.233 5.233 22 C 0.038 3.962 23 C -0.099 4.099 24 C -0.030 4.030 25 N -0.075 5.075 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.841 -8.762 -6.946 15.574 hybrid contribution 0.846 0.456 -0.063 0.963 sum -9.994 -8.306 -7.008 14.765 Atomic orbital electron populations 1.21794 0.92762 1.02753 1.03509 1.22958 0.95170 0.80527 1.02463 1.86488 1.24755 1.32085 1.84630 1.23896 0.80422 0.92972 0.73178 1.90681 1.60131 1.42769 1.43334 1.21705 0.88031 0.90680 1.06266 1.59926 1.05868 1.38091 1.16552 1.20126 0.94732 0.79877 0.97421 1.20997 0.90179 0.96056 1.49076 0.91931 1.24871 0.99207 0.94835 0.94658 1.69923 1.35868 1.00315 1.46419 0.86516 0.84645 0.78499 0.78141 1.20386 1.20773 1.19492 1.19943 0.85354 0.85707 0.88263 1.68080 1.26674 1.32031 0.98473 1.22911 0.90805 0.88875 0.87685 1.98428 1.87682 1.69402 1.39541 1.67897 1.13103 1.06339 1.35985 1.23265 0.91717 0.96055 0.85147 1.17543 1.04126 0.96826 0.91366 1.24268 0.93425 0.92819 0.92478 1.81148 1.08575 1.10123 1.07628 0.91511 0.90442 0.91452 0.91596 0.91239 0.85300 0.88595 0.95773 0.93073 0.92433 0.79556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.70 6.21 37.16 0.23 0.93 16 3 O -0.36 -5.00 10.22 -39.26 -0.40 -5.40 16 4 C 0.45 7.36 7.74 36.01 0.28 7.63 16 5 O -0.48 -9.07 14.39 -18.75 -0.27 -9.34 16 6 C 0.06 1.00 5.56 -4.98 -0.03 0.97 16 7 N -0.48 -9.66 3.51 -175.47 -0.62 -10.28 16 8 C 0.20 4.68 4.66 -4.98 -0.02 4.66 16 9 C -0.52 -13.86 8.72 -34.44 -0.30 -14.16 16 10 H 0.06 1.68 6.47 -52.49 -0.34 1.34 16 11 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 13 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 C 0.45 8.60 3.85 -154.81 -0.60 8.00 16 18 N -0.53 -9.73 9.30 -10.62 -0.10 -9.83 16 19 C 0.39 6.47 8.17 -91.86 -0.75 5.72 16 20 Cl 0.02 0.30 29.26 -51.86 -1.52 -1.22 16 21 N -0.52 -7.93 10.38 -11.35 -0.12 -8.05 16 22 C 0.21 2.97 11.06 -16.81 -0.19 2.79 16 23 C -0.09 -1.59 5.21 -106.32 -0.55 -2.14 16 24 C 0.29 5.62 13.03 -22.41 -0.29 5.33 16 25 N -0.40 -8.43 18.55 41.91 0.78 -7.65 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.13 1.87 7.73 -51.93 -0.40 1.47 16 32 H 0.10 1.45 7.37 -51.93 -0.38 1.07 16 33 H 0.02 0.60 7.86 -51.93 -0.41 0.20 16 34 H 0.05 1.24 7.82 -51.93 -0.41 0.83 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 36 H 0.19 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -31.16 343.97 -6.89 -38.05 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.61 Total: -4.36 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: -1.93 Total: 20.66 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: 0.68 Total: -59.75 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.67 Total: -14.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.52 Total: -1.22 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.16 -6.89 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.981 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds