Wall clock time and date at job start Tue Mar 31 2020 13:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47096 * 2 1 4 4 C 1.34230 * 116.99824 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00048 * 354.84859 * 4 3 2 6 6 C 1.50707 * 119.99954 * 174.85018 * 4 3 2 7 7 N 1.46891 * 109.47002 * 185.92163 * 6 4 3 8 8 C 1.46907 * 111.00022 * 200.09330 * 7 6 4 9 9 C 1.50694 * 109.47096 * 170.00248 * 8 7 6 10 10 H 1.08002 * 120.00506 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99782 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99889 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47140 * 90.00047 * 13 11 9 15 15 H 1.48504 * 109.47127 * 210.00038 * 13 11 9 16 16 H 1.48498 * 109.47133 * 329.99703 * 13 11 9 17 17 C 1.38002 * 111.00162 * 76.14067 * 7 6 4 18 18 N 1.32906 * 120.63019 * 57.09537 * 17 7 6 19 19 C 1.31853 * 120.83593 * 179.97438 * 18 17 7 20 20 Cl 1.73599 * 118.90119 * 180.02562 * 19 18 17 21 21 N 1.32075 * 122.19269 * 359.97438 * 19 18 17 22 22 C 1.32210 * 121.18232 * 359.74574 * 21 19 18 23 23 C 1.39778 * 119.00659 * 0.53033 * 22 21 19 24 24 C 1.43209 * 120.97972 * 179.73636 * 23 22 21 25 25 N 5.53510 * 130.26194 * 355.81814 * 3 1 2 26 26 H 1.09004 * 109.46725 * 60.00516 * 1 2 3 27 27 H 1.08995 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47085 * 300.00679 * 1 2 3 29 29 H 1.08996 * 109.47482 * 239.99921 * 2 1 3 30 30 H 1.08998 * 109.47146 * 119.99368 * 2 1 3 31 31 H 1.08998 * 109.47168 * 65.91772 * 6 4 3 32 32 H 1.08999 * 109.46675 * 305.92443 * 6 4 3 33 33 H 1.09003 * 109.46678 * 290.00249 * 8 7 6 34 34 H 1.08994 * 109.46697 * 49.99429 * 8 7 6 35 35 H 0.97005 * 119.99700 * 180.02562 * 12 11 9 36 36 H 1.08002 * 120.50001 * 180.29051 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0803 0.5908 0.0930 6 6 3.9215 2.9323 -0.1177 7 7 5.3830 2.8465 -0.2369 8 6 6.0161 4.1232 0.1200 9 6 7.5072 3.9323 0.2251 10 1 7.9413 2.9599 0.0452 11 6 8.3175 4.9993 0.5509 12 7 7.7891 6.1836 0.7695 13 14 10.1658 4.7627 0.6819 14 1 10.7917 5.0114 -0.6416 15 1 10.7177 5.7164 1.6775 16 1 10.4574 3.3722 1.1140 17 6 5.7533 2.4485 -1.5053 18 7 5.3680 3.1414 -2.5720 19 6 5.7199 2.7651 -3.7857 20 17 5.1891 3.7077 -5.1434 21 7 6.4635 1.6954 -4.0028 22 6 6.8974 0.9486 -3.0018 23 6 6.5487 1.2987 -1.6943 24 6 6.9906 0.5166 -0.5790 25 7 7.3406 -0.1040 0.3080 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 3.6625 3.5095 0.7698 32 1 3.5129 3.4220 -1.0016 33 1 5.7979 4.8644 -0.6488 34 1 5.6254 4.4672 1.0776 35 1 8.3592 6.9344 0.9984 36 1 7.5088 0.0788 -3.1917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:06 Heat of formation + Delta-G solvation = -9.820899 kcal Electronic energy + Delta-G solvation = -25205.944013 eV Core-core repulsion = 21330.907618 eV Total energy + Delta-G solvation = -3875.036395 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.62158 -41.44157 -39.02868 -38.03708 -37.47627 -37.45039 -35.02607 -34.34857 -33.06076 -32.61133 -30.35901 -28.08985 -26.39273 -25.73110 -24.27366 -23.20350 -22.06762 -20.39981 -19.56441 -19.14861 -18.72431 -18.21068 -17.75203 -17.13237 -17.05919 -16.54606 -16.26864 -15.60990 -15.33125 -15.08354 -14.66573 -14.61420 -14.51549 -14.19536 -13.88029 -13.67019 -13.59863 -13.41873 -12.93154 -12.86889 -12.80322 -12.75576 -12.69610 -12.60005 -12.51792 -12.23946 -11.89286 -11.78178 -11.54234 -11.35916 -10.80724 -10.65985 -10.45697 -9.83303 -8.29950 -6.38575 -0.90360 -0.31746 0.17781 1.09671 1.34147 1.36464 1.41876 1.48550 1.63352 1.82246 2.29510 2.41711 2.61009 2.77080 2.87902 3.06013 3.30217 3.64765 3.71394 3.92233 3.99004 4.08007 4.17646 4.25975 4.33022 4.72088 4.77999 4.88294 4.91975 5.06067 5.12149 5.38802 5.40375 5.42224 5.77293 5.87258 6.10559 6.48784 6.53361 6.69319 6.73095 7.30121 8.80389 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009516 B = 0.005420 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.663230 B = 5165.173764 C = 6331.798654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.462 3.538 5 O -0.513 6.513 6 C 0.059 3.941 7 N -0.492 5.492 8 C 0.218 3.782 9 C -0.534 4.534 10 H 0.054 0.946 11 C 0.024 3.976 12 N -0.915 5.915 13 Si 0.947 3.053 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.275 1.275 17 C 0.432 3.568 18 N -0.547 5.547 19 C 0.387 3.613 20 Cl 0.045 6.955 21 N -0.510 5.510 22 C 0.230 3.770 23 C -0.112 4.112 24 C 0.302 3.698 25 N -0.436 5.436 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.006 0.994 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -8.811 -9.242 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.275 6.275 4 C 0.304 3.696 5 O -0.400 6.400 6 C -0.068 4.068 7 N -0.217 5.217 8 C 0.096 3.904 9 C -0.572 4.572 10 H 0.072 0.928 11 C -0.177 4.177 12 N -0.554 5.554 13 Si 0.773 3.227 14 H -0.196 1.196 15 H -0.201 1.201 16 H -0.200 1.200 17 C 0.193 3.807 18 N -0.269 5.269 19 C 0.092 3.908 20 Cl 0.073 6.927 21 N -0.227 5.227 22 C 0.062 3.938 23 C -0.122 4.122 24 C -0.014 4.014 25 N -0.112 5.112 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.125 0.875 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.218 -9.589 -8.315 16.939 hybrid contribution 0.832 0.681 0.251 1.104 sum -10.386 -8.908 -8.064 15.883 Atomic orbital electron populations 1.21816 0.89963 1.04420 1.03845 1.23288 0.97295 0.79026 1.02284 1.86484 1.23168 1.33897 1.83988 1.23728 0.81049 0.92342 0.72457 1.90669 1.60955 1.43510 1.44868 1.21782 0.86152 0.91463 1.07434 1.59708 1.07864 1.36204 1.17891 1.19661 0.93610 0.81097 0.96047 1.21245 0.91834 0.95580 1.48524 0.92785 1.25551 1.02794 0.94726 0.94597 1.70002 1.37098 1.00887 1.47448 0.85703 0.80528 0.78047 0.78453 1.19564 1.20100 1.20016 1.19986 0.86104 0.86451 0.88147 1.68052 1.27393 1.32471 0.98940 1.23304 0.90393 0.89212 0.87874 1.98437 1.87379 1.68878 1.38008 1.68094 1.12847 1.06008 1.35752 1.24019 0.90112 0.96279 0.83365 1.17738 1.05127 0.96999 0.92318 1.24506 0.92447 0.92137 0.92307 1.81142 1.10077 1.11498 1.08458 0.91069 0.88078 0.91192 0.91568 0.91737 0.83986 0.87459 0.97621 0.94396 0.92286 0.74902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.29 71.98 0.74 -1.23 16 2 C 0.05 1.16 6.21 71.98 0.45 1.60 16 3 O -0.36 -9.59 10.22 -51.42 -0.53 -10.12 16 4 C 0.46 14.85 7.74 71.24 0.55 15.40 16 5 O -0.51 -19.25 14.39 21.96 0.32 -18.93 16 6 C 0.06 1.93 5.56 85.56 0.48 2.40 16 7 N -0.49 -20.00 3.51 -709.07 -2.49 -22.49 16 8 C 0.22 10.46 4.66 85.55 0.40 10.86 16 9 C -0.53 -28.46 8.72 25.60 0.22 -28.24 16 10 H 0.05 2.93 6.47 -2.91 -0.02 2.91 16 11 C 0.02 1.30 5.46 84.66 0.46 1.76 16 12 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 13 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 C 0.43 16.48 3.85 133.73 0.51 17.00 16 18 N -0.55 -19.64 9.30 -187.52 -1.74 -21.39 16 19 C 0.39 12.13 8.17 180.78 1.48 13.61 16 20 Cl 0.05 1.17 29.26 -2.72 -0.08 1.09 16 21 N -0.51 -14.44 10.38 -189.81 -1.97 -16.41 16 22 C 0.23 6.08 11.06 85.01 0.94 7.02 16 23 C -0.11 -3.90 5.21 -20.96 -0.11 -4.01 16 24 C 0.30 11.73 13.03 88.31 1.15 12.89 16 25 N -0.44 -18.42 18.55 19.03 0.35 -18.07 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 31 H 0.14 4.15 7.73 -2.39 -0.02 4.13 16 32 H 0.11 3.23 7.37 -2.39 -0.02 3.22 16 33 H 0.01 0.30 7.86 -2.39 -0.02 0.28 16 34 H 0.04 1.89 7.82 -2.39 -0.02 1.87 16 35 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 36 H 0.23 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -67.11 343.97 4.58 -62.52 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 1.14 Total: 0.38 kcal Atomic # 6 Polarization: 41.79 SS G_CDS: 7.27 Total: 49.06 kcal Atomic # 7 Polarization: -123.84 SS G_CDS: -5.56 Total: -129.40 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.21 Total: -29.05 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: 1.17 SS G_CDS: -0.08 Total: 1.09 kcal Total: -67.11 4.58 -62.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.704 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds