Wall clock time and date at job start Tue Mar 31 2020 13:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47117 * 2 1 4 4 C 1.34227 * 117.00067 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00271 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46962 * 180.02562 * 6 4 3 8 8 C 1.46895 * 111.00008 * 72.44031 * 7 6 4 9 9 C 1.50698 * 109.46742 * 193.95299 * 8 7 6 10 10 H 1.07998 * 120.00304 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00317 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46883 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47088 * 119.99564 * 13 11 9 16 16 H 1.48500 * 109.47235 * 239.99903 * 13 11 9 17 17 C 1.38401 * 110.99415 * 196.39424 * 7 6 4 18 18 N 1.32734 * 120.15967 * 294.62352 * 17 7 6 19 19 C 1.32218 * 119.98400 * 179.97438 * 18 17 7 20 20 Cl 1.73602 * 119.84023 * 180.02562 * 19 18 17 21 21 C 1.38859 * 120.31583 * 0.02562 * 19 18 17 22 22 N 1.31783 * 120.33220 * 359.97438 * 21 19 18 23 23 C 1.33071 * 120.00202 * 359.97438 * 22 21 19 24 24 C 1.43205 * 120.15077 * 179.97438 * 23 22 21 25 25 N 6.61593 * 145.56203 * 55.28314 * 2 1 3 26 26 H 1.09010 * 109.46584 * 299.99446 * 1 2 3 27 27 H 1.08994 * 109.47412 * 59.99164 * 1 2 3 28 28 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46816 * 239.99976 * 2 1 3 30 30 H 1.08998 * 109.47008 * 120.00583 * 2 1 3 31 31 H 1.08997 * 109.47202 * 60.00201 * 6 4 3 32 32 H 1.09003 * 109.47004 * 300.00017 * 6 4 3 33 33 H 1.09002 * 109.46951 * 313.94610 * 8 7 6 34 34 H 1.08997 * 109.47450 * 73.94794 * 8 7 6 35 35 H 0.96996 * 120.00425 * 179.97438 * 12 11 9 36 36 H 1.07998 * 119.83354 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3878 2.8604 -0.0014 8 6 5.8907 2.4206 -1.3096 9 6 7.3393 2.0251 -1.1838 10 1 7.8368 2.0939 -0.2277 11 6 8.0297 1.5753 -2.2893 12 7 7.4238 1.4909 -3.4535 13 14 9.8257 1.0856 -2.1335 14 1 10.2694 1.2720 -0.7286 15 1 9.9853 -0.3397 -2.5185 16 1 10.6501 1.9358 -3.0294 17 6 5.9483 4.0720 0.3638 18 7 5.7957 5.1382 -0.4121 19 6 6.3321 6.2941 -0.0597 20 17 6.1297 7.6862 -1.0769 21 6 7.0567 6.3998 1.1202 22 7 7.2160 5.3493 1.8998 23 6 6.6807 4.1799 1.5581 24 6 6.8523 3.0362 2.4027 25 7 6.9864 2.1308 3.0753 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5853 3.4690 0.8905 32 1 3.5844 3.4701 -0.8895 33 1 5.3091 1.5653 -1.6536 34 1 5.7975 3.2356 -2.0274 35 1 7.9096 1.1749 -4.2313 36 1 7.4912 7.3479 1.4007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:15 Heat of formation + Delta-G solvation = 12.602373 kcal Electronic energy + Delta-G solvation = -24909.760967 eV Core-core repulsion = 21035.696918 eV Total energy + Delta-G solvation = -3874.064049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.42375 -40.12130 -37.54841 -36.92677 -36.19051 -35.98878 -33.92985 -32.75480 -31.79001 -30.94330 -28.57235 -26.52486 -25.57864 -23.98465 -23.13143 -21.78479 -20.52349 -19.63006 -18.32135 -17.71720 -16.91424 -16.51658 -16.27028 -16.06835 -15.51026 -15.10299 -14.74236 -14.41330 -14.23285 -13.67922 -13.30880 -13.22865 -12.85036 -12.80105 -12.59127 -12.48871 -12.18919 -11.98249 -11.93642 -11.80481 -11.53900 -11.52544 -11.42684 -11.01861 -10.79527 -10.71325 -10.35419 -10.21648 -10.07031 -9.49459 -9.45943 -9.00130 -8.59993 -8.16489 -6.14841 -4.16565 0.19929 0.85789 1.51448 2.59819 2.68142 2.83088 2.92215 3.26288 3.34033 3.39001 3.43501 3.85568 3.87278 4.28582 4.31456 4.43021 4.73352 4.88529 4.94042 5.04400 5.08993 5.22723 5.25300 5.30418 5.48064 5.64244 5.71645 5.75628 5.91039 6.58611 6.67474 6.89672 6.92433 7.38440 7.44641 7.64357 7.73351 7.86097 8.10853 8.20638 8.85590 9.47044 10.95800 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.007844 B = 0.005625 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.960587 B = 4976.329770 C = 6540.221764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.367 6.367 4 C 0.458 3.542 5 O -0.463 6.463 6 C 0.070 3.930 7 N -0.477 5.477 8 C 0.194 3.806 9 C -0.512 4.512 10 H 0.060 0.940 11 C 0.064 3.936 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.282 1.282 17 C 0.365 3.635 18 N -0.451 5.451 19 C 0.165 3.835 20 Cl -0.012 7.012 21 C 0.061 3.939 22 N -0.385 5.385 23 C 0.167 3.833 24 C 0.288 3.712 25 N -0.377 5.377 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.123 9.857 6.354 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.285 6.285 4 C 0.297 3.703 5 O -0.346 6.346 6 C -0.058 4.058 7 N -0.202 5.202 8 C 0.072 3.928 9 C -0.551 4.551 10 H 0.078 0.922 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.208 1.208 17 C 0.132 3.868 18 N -0.171 5.171 19 C -0.006 4.006 20 Cl 0.016 6.984 21 C -0.103 4.103 22 N -0.100 5.100 23 C 0.024 3.976 24 C -0.030 4.030 25 N -0.053 5.053 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -9.569 7.787 7.434 14.404 hybrid contribution 0.791 0.490 -1.276 1.579 sum -8.777 8.277 6.158 13.545 Atomic orbital electron populations 1.21789 0.92917 1.02707 1.03310 1.22959 0.94937 0.80504 1.02756 1.86439 1.24796 1.32214 1.85013 1.23282 0.80407 0.92589 0.74010 1.90778 1.59728 1.42213 1.41862 1.21458 0.88160 0.91441 1.04742 1.60062 1.03551 1.18254 1.38368 1.20169 0.96882 0.96419 0.79331 1.20971 0.94388 1.44368 0.95328 0.92227 1.24876 0.98641 0.95294 0.95024 1.69937 1.36723 1.46379 0.99783 0.86469 0.84482 0.78447 0.78347 1.19574 1.20648 1.20840 1.20396 0.90785 0.87994 0.87651 1.68185 1.19701 0.98380 1.30868 1.23139 0.95732 0.90067 0.91694 1.98432 1.95803 1.35866 1.68303 1.23478 0.97797 0.98698 0.90311 1.68407 1.14280 0.97559 1.29788 1.17116 0.99016 0.89081 0.92377 1.23972 0.94632 0.91986 0.92457 1.81132 1.06109 1.08704 1.09390 0.91678 0.91524 0.90462 0.91134 0.91360 0.87720 0.88956 0.92855 0.96083 0.92689 0.79455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.96 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -5.53 10.22 -39.25 -0.40 -5.93 16 4 C 0.46 8.23 7.56 36.01 0.27 8.51 16 5 O -0.46 -10.24 14.75 -18.75 -0.28 -10.52 16 6 C 0.07 1.16 5.40 -4.97 -0.03 1.13 16 7 N -0.48 -9.80 3.45 -175.57 -0.61 -10.40 16 8 C 0.19 4.84 4.26 -4.98 -0.02 4.82 16 9 C -0.51 -14.23 8.80 -34.44 -0.30 -14.54 16 10 H 0.06 1.68 7.75 -52.49 -0.41 1.28 16 11 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 13 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.36 6.77 4.60 -154.79 -0.71 6.05 16 18 N -0.45 -7.76 9.65 -9.09 -0.09 -7.85 16 19 C 0.17 2.29 7.29 -17.16 -0.13 2.17 16 20 Cl -0.01 -0.14 29.12 -51.86 -1.51 -1.65 16 21 C 0.06 0.74 10.99 -17.34 -0.19 0.55 16 22 N -0.38 -5.74 10.42 -10.69 -0.11 -5.85 16 23 C 0.17 2.93 6.61 -84.54 -0.56 2.38 16 24 C 0.29 5.52 15.04 -22.48 -0.34 5.18 16 25 N -0.38 -7.68 18.54 41.83 0.78 -6.91 16 26 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 30 H 0.07 0.87 8.13 -51.93 -0.42 0.44 16 31 H 0.10 1.40 7.96 -51.93 -0.41 0.99 16 32 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 33 H 0.05 1.46 6.41 -51.93 -0.33 1.13 16 34 H 0.02 0.56 7.54 -51.93 -0.39 0.17 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -32.93 347.56 -6.39 -39.32 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: -3.63 Total: -5.22 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: -1.49 Total: 18.03 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.71 Total: -56.25 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.68 Total: -16.45 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.51 Total: -1.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.93 -6.39 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.918 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds