Wall clock time and date at job start Tue Mar 31 2020 13:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45196 * 109.47117 * 2 1 4 4 C 1.34227 * 117.00067 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00271 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46962 * 180.02562 * 6 4 3 8 8 C 1.46895 * 111.00008 * 72.44031 * 7 6 4 9 9 C 1.50698 * 109.46742 * 193.95299 * 8 7 6 10 10 H 1.07998 * 120.00304 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99852 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00317 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00029 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46883 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47088 * 119.99564 * 13 11 9 16 16 H 1.48500 * 109.47235 * 239.99903 * 13 11 9 17 17 C 1.38401 * 110.99415 * 196.39424 * 7 6 4 18 18 N 1.32734 * 120.15967 * 294.62352 * 17 7 6 19 19 C 1.32218 * 119.98400 * 179.97438 * 18 17 7 20 20 Cl 1.73602 * 119.84023 * 180.02562 * 19 18 17 21 21 C 1.38859 * 120.31583 * 0.02562 * 19 18 17 22 22 N 1.31783 * 120.33220 * 359.97438 * 21 19 18 23 23 C 1.33071 * 120.00202 * 359.97438 * 22 21 19 24 24 C 1.43205 * 120.15077 * 179.97438 * 23 22 21 25 25 N 6.61593 * 145.56203 * 55.28314 * 2 1 3 26 26 H 1.09010 * 109.46584 * 299.99446 * 1 2 3 27 27 H 1.08994 * 109.47412 * 59.99164 * 1 2 3 28 28 H 1.08996 * 109.47073 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46816 * 239.99976 * 2 1 3 30 30 H 1.08998 * 109.47008 * 120.00583 * 2 1 3 31 31 H 1.08997 * 109.47202 * 60.00201 * 6 4 3 32 32 H 1.09003 * 109.47004 * 300.00017 * 6 4 3 33 33 H 1.09002 * 109.46951 * 313.94610 * 8 7 6 34 34 H 1.08997 * 109.47450 * 73.94794 * 8 7 6 35 35 H 0.96996 * 120.00425 * 179.97438 * 12 11 9 36 36 H 1.07998 * 119.83354 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3878 2.8604 -0.0014 8 6 5.8907 2.4206 -1.3096 9 6 7.3393 2.0251 -1.1838 10 1 7.8368 2.0939 -0.2277 11 6 8.0297 1.5753 -2.2893 12 7 7.4238 1.4909 -3.4535 13 14 9.8257 1.0856 -2.1335 14 1 10.2694 1.2720 -0.7286 15 1 9.9853 -0.3397 -2.5185 16 1 10.6501 1.9358 -3.0294 17 6 5.9483 4.0720 0.3638 18 7 5.7957 5.1382 -0.4121 19 6 6.3321 6.2941 -0.0597 20 17 6.1297 7.6862 -1.0769 21 6 7.0567 6.3998 1.1202 22 7 7.2160 5.3493 1.8998 23 6 6.6807 4.1799 1.5581 24 6 6.8523 3.0362 2.4027 25 7 6.9864 2.1308 3.0753 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5853 3.4690 0.8905 32 1 3.5844 3.4701 -0.8895 33 1 5.3091 1.5653 -1.6536 34 1 5.7975 3.2356 -2.0274 35 1 7.9096 1.1749 -4.2313 36 1 7.4912 7.3479 1.4007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:14 Heat of formation + Delta-G solvation = -9.339899 kcal Electronic energy + Delta-G solvation = -24910.712455 eV Core-core repulsion = 21035.696918 eV Total energy + Delta-G solvation = -3875.015537 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.70271 -41.50110 -38.93408 -38.08339 -37.60594 -37.40316 -35.30318 -34.76019 -32.81742 -32.18995 -30.28539 -28.11926 -26.83394 -25.56215 -24.36046 -23.24885 -21.90280 -20.93744 -19.62096 -19.19542 -18.52800 -17.93934 -17.74116 -17.51236 -16.83261 -16.62713 -16.22746 -15.72561 -15.56343 -15.15730 -14.72661 -14.67072 -14.24092 -14.19395 -14.03367 -13.85530 -13.60442 -13.46383 -13.11855 -13.07005 -12.89723 -12.75648 -12.66930 -12.54516 -12.50511 -12.32507 -12.03018 -11.65641 -11.53029 -11.40279 -10.83373 -10.62151 -10.22987 -9.79463 -8.29266 -6.37289 -1.06105 -0.34202 0.42101 1.17601 1.30968 1.33614 1.39443 1.41801 1.45957 1.58694 2.09608 2.30569 2.50536 2.53922 3.04820 3.06602 3.16251 3.53553 3.73517 3.81349 3.97789 4.02870 4.10122 4.17560 4.34776 4.63903 4.80661 4.89728 4.93096 5.05861 5.12816 5.37673 5.44247 5.63036 5.80046 5.95712 6.11435 6.23074 6.26898 6.70952 6.78621 7.30094 8.81955 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.007844 B = 0.005625 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3568.960587 B = 4976.329770 C = 6540.221764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.461 3.539 5 O -0.513 6.513 6 C 0.069 3.931 7 N -0.491 5.491 8 C 0.219 3.781 9 C -0.523 4.523 10 H 0.049 0.951 11 C 0.016 3.984 12 N -0.921 5.921 13 Si 0.953 3.047 14 H -0.273 1.273 15 H -0.278 1.278 16 H -0.268 1.268 17 C 0.345 3.655 18 N -0.470 5.470 19 C 0.166 3.834 20 Cl 0.016 6.984 21 C 0.092 3.908 22 N -0.385 5.385 23 C 0.152 3.848 24 C 0.298 3.702 25 N -0.412 5.412 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.021 0.979 34 H 0.003 0.997 35 H 0.266 0.734 36 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 12.281 6.916 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.303 3.697 5 O -0.400 6.400 6 C -0.058 4.058 7 N -0.216 5.216 8 C 0.096 3.904 9 C -0.561 4.561 10 H 0.067 0.933 11 C -0.184 4.184 12 N -0.561 5.561 13 Si 0.778 3.222 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.193 1.193 17 C 0.113 3.887 18 N -0.191 5.191 19 C -0.007 4.007 20 Cl 0.044 6.956 21 C -0.074 4.074 22 N -0.100 5.100 23 C 0.012 3.988 24 C -0.020 4.020 25 N -0.089 5.089 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.039 0.961 34 H 0.021 0.979 35 H 0.075 0.925 36 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.683 10.201 8.021 16.192 hybrid contribution 0.730 -0.044 -1.471 1.642 sum -8.954 10.157 6.550 15.041 Atomic orbital electron populations 1.21804 0.89487 1.04456 1.03977 1.23295 0.97541 0.79205 1.02121 1.86447 1.23071 1.33746 1.84202 1.23621 0.80966 0.92609 0.72504 1.90755 1.61016 1.43773 1.44476 1.21633 0.86226 0.91050 1.06894 1.59723 1.05659 1.20461 1.35715 1.19564 0.95157 0.94424 0.81277 1.21213 0.95887 1.44201 0.94787 0.93313 1.25646 1.02516 0.95374 0.94823 1.70030 1.38245 1.47393 1.00404 0.85585 0.80096 0.78304 0.78260 1.19757 1.20394 1.19340 1.20150 0.92178 0.87791 0.88534 1.68107 1.20638 0.99168 1.31138 1.23562 0.94874 0.89751 0.92493 1.98450 1.95563 1.33872 1.67684 1.24368 0.95135 0.99452 0.88402 1.68508 1.14069 0.97205 1.30251 1.16965 1.00012 0.89643 0.92226 1.24340 0.93681 0.92028 0.91950 1.81117 1.07441 1.09579 1.10720 0.90700 0.91098 0.88158 0.92331 0.91637 0.84160 0.87823 0.96113 0.97904 0.92453 0.74158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.29 71.98 0.74 -1.56 16 2 C 0.05 1.33 6.19 71.98 0.45 1.78 16 3 O -0.36 -10.83 10.22 -51.39 -0.53 -11.35 16 4 C 0.46 17.10 7.56 71.24 0.54 17.63 16 5 O -0.51 -23.93 14.75 21.95 0.32 -23.61 16 6 C 0.07 2.31 5.40 85.56 0.46 2.77 16 7 N -0.49 -20.60 3.45 -709.39 -2.45 -23.05 16 8 C 0.22 11.38 4.26 85.56 0.36 11.74 16 9 C -0.52 -29.83 8.80 25.60 0.23 -29.60 16 10 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 11 C 0.02 0.92 5.46 84.66 0.46 1.38 16 12 N -0.92 -54.94 13.29 21.45 0.28 -54.66 16 13 Si 0.95 45.58 29.54 68.60 2.03 47.60 16 14 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 17 C 0.35 12.69 4.60 133.51 0.61 13.31 16 18 N -0.47 -15.59 9.65 -182.66 -1.76 -17.35 16 19 C 0.17 4.13 7.29 84.78 0.62 4.75 16 20 Cl 0.02 0.31 29.12 -2.72 -0.08 0.24 16 21 C 0.09 1.86 10.99 84.85 0.93 2.80 16 22 N -0.38 -10.54 10.42 -187.74 -1.96 -12.49 16 23 C 0.15 5.22 6.61 40.76 0.27 5.49 16 24 C 0.30 11.53 15.04 88.33 1.33 12.86 16 25 N -0.41 -17.15 18.54 19.00 0.35 -16.79 16 26 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.63 8.13 -2.39 -0.02 1.61 16 30 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.14 3.62 7.96 -2.39 -0.02 3.60 16 32 H 0.10 3.23 8.05 -2.39 -0.02 3.21 16 33 H 0.02 1.21 6.41 -2.39 -0.02 1.19 16 34 H 0.00 0.17 7.54 -2.39 -0.02 0.15 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.24 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -74.64 347.56 4.36 -70.28 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: 1.14 Total: -2.16 kcal Atomic # 6 Polarization: 36.34 SS G_CDS: 7.00 Total: 43.34 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.53 Total: -124.34 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -0.20 Total: -34.96 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.24 kcal Total: -74.64 4.36 -70.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.940 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds