Wall clock time and date at job start Tue Mar 31 2020 13:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.46956 * 2 1 4 4 C 1.34234 * 116.99974 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00240 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47294 * 183.86205 * 6 4 3 8 8 C 1.46900 * 111.00087 * 64.38775 * 7 6 4 9 9 C 1.50695 * 109.46902 * 71.71439 * 8 7 6 10 10 H 1.08004 * 120.00270 * 355.22427 * 9 8 7 11 11 C 1.37878 * 120.00091 * 175.22399 * 9 8 7 12 12 N 1.31514 * 119.99734 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46939 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46929 * 119.99752 * 13 11 9 16 16 H 1.48489 * 109.47471 * 240.00189 * 13 11 9 17 17 C 1.38525 * 110.99390 * 300.43760 * 7 6 4 18 18 N 1.32536 * 120.26556 * 109.97011 * 17 7 6 19 19 N 1.28273 * 122.22615 * 179.97438 * 18 17 7 20 20 C 1.31976 * 122.65230 * 359.70237 * 19 18 17 21 21 Cl 1.73599 * 119.92290 * 180.32474 * 20 19 18 22 22 C 1.38596 * 120.15373 * 0.58514 * 20 19 18 23 23 C 1.40078 * 117.87796 * 359.43816 * 22 20 19 24 24 C 1.43199 * 121.19256 * 180.29492 * 23 22 20 25 25 N 6.61583 * 120.40161 * 28.44448 * 2 1 3 26 26 H 1.09000 * 109.47011 * 299.99959 * 1 2 3 27 27 H 1.09003 * 109.47105 * 59.99674 * 1 2 3 28 28 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47011 * 240.00041 * 2 1 3 30 30 H 1.08996 * 109.46968 * 119.99988 * 2 1 3 31 31 H 1.09004 * 109.47416 * 63.85715 * 6 4 3 32 32 H 1.09001 * 109.47027 * 303.85711 * 6 4 3 33 33 H 1.08997 * 109.46810 * 191.71049 * 8 7 6 34 34 H 1.08999 * 109.46893 * 311.71533 * 8 7 6 35 35 H 0.97004 * 119.99903 * 180.02562 * 12 11 9 36 36 H 1.08003 * 121.05783 * 179.71078 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3848 2.8618 -0.0940 8 6 5.8005 2.2754 -1.3752 9 6 5.5431 3.2610 -2.4857 10 1 5.0434 4.1948 -2.2740 11 6 5.9455 2.9707 -3.7721 12 7 6.5534 1.8334 -4.0300 13 14 5.6258 4.1921 -5.1489 14 1 4.9314 5.3850 -4.6009 15 1 6.9176 4.6060 -5.7532 16 1 4.7748 3.5567 -6.1866 17 6 5.9146 2.1528 0.9716 18 7 6.4466 0.9544 0.7781 19 7 6.9480 0.2657 1.7371 20 6 6.9779 0.6973 2.9839 21 17 7.6817 -0.2908 4.2257 22 6 6.4439 1.9352 3.3051 23 6 5.8927 2.6997 2.2687 24 6 5.3275 3.9913 2.5195 25 7 4.8780 5.0173 2.7179 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6416 3.4457 0.9230 32 1 3.5301 3.4925 -0.8529 33 1 6.8639 2.0390 -1.3385 34 1 5.2316 1.3640 -1.5591 35 1 6.8369 1.6293 -4.9350 36 1 6.4564 2.3008 4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:04 Heat of formation + Delta-G solvation = 27.048954 kcal Electronic energy + Delta-G solvation = -25275.195292 eV Core-core repulsion = 21401.757694 eV Total energy + Delta-G solvation = -3873.437598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.49522 -40.20591 -37.79105 -36.83084 -36.79949 -35.75771 -33.41213 -32.79767 -31.86524 -31.12670 -28.47800 -26.73780 -25.79485 -23.82661 -23.22394 -21.86752 -20.63323 -19.67004 -18.15842 -17.65612 -17.13419 -16.52854 -16.07265 -15.78287 -15.70110 -15.56717 -14.66771 -14.40570 -14.07079 -13.85336 -13.64898 -13.33514 -13.26689 -12.96403 -12.82541 -12.36696 -12.21099 -12.12793 -11.73355 -11.58412 -11.56871 -11.37964 -11.18197 -10.90504 -10.82686 -10.61389 -10.39446 -10.27101 -10.12926 -9.98994 -9.58335 -9.38887 -8.57235 -8.02011 -6.13832 -4.19850 0.15700 0.69362 1.50704 2.42828 2.48472 2.75973 2.84900 3.24716 3.32426 3.35098 3.41225 3.52642 3.70128 4.18763 4.34621 4.41912 4.65847 4.85067 4.93377 5.02577 5.03553 5.14220 5.22100 5.28985 5.34524 5.54848 5.67008 5.67735 5.76337 5.91544 6.55814 6.59829 6.99415 7.25868 7.48599 7.53252 7.87476 7.99274 8.13154 8.65069 8.86298 9.44440 10.95769 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.004984 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.147430 B = 5617.057271 C = 6772.903309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.426 3.574 5 O -0.477 6.477 6 C 0.074 3.926 7 N -0.446 5.446 8 C 0.184 3.816 9 C -0.530 4.530 10 H 0.066 0.934 11 C 0.064 3.936 12 N -0.884 5.884 13 Si 0.899 3.101 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.304 3.696 18 N -0.190 5.190 19 N -0.184 5.184 20 C 0.076 3.924 21 Cl -0.012 7.012 22 C -0.046 4.046 23 C -0.034 4.034 24 C 0.265 3.735 25 N -0.384 5.384 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -2.634 14.720 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.266 3.734 5 O -0.362 6.362 6 C -0.054 4.054 7 N -0.164 5.164 8 C 0.061 3.939 9 C -0.568 4.568 10 H 0.084 0.916 11 C -0.140 4.140 12 N -0.521 5.521 13 Si 0.726 3.274 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.065 3.935 18 N -0.039 5.039 19 N -0.032 5.032 20 C -0.095 4.095 21 Cl 0.016 6.984 22 C -0.078 4.078 23 C -0.051 4.051 24 C -0.051 4.051 25 N -0.060 5.060 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.094 -2.263 13.861 15.309 hybrid contribution -0.264 0.342 0.068 0.437 sum -6.358 -1.920 13.929 15.431 Atomic orbital electron populations 1.21789 0.92873 1.02706 1.03377 1.22970 0.95070 0.80640 1.02613 1.86497 1.24778 1.32162 1.84302 1.24991 0.81018 0.94116 0.73285 1.90812 1.59446 1.42494 1.43442 1.22057 0.85585 0.90942 1.06786 1.59828 1.05812 1.45718 1.05049 1.20252 0.98778 0.95124 0.79719 1.21102 1.39967 1.04001 0.91778 0.91595 1.24937 0.94828 0.95482 0.98708 1.69992 1.38703 1.22500 1.20913 0.86428 0.78103 0.81080 0.81759 1.19530 1.20824 1.20920 1.21919 0.93042 0.88497 0.90035 1.74028 1.07655 1.01403 1.20808 1.72825 1.07451 1.26697 0.96229 1.23134 1.01815 0.92319 0.92231 1.98405 1.81993 1.69908 1.48061 1.22080 0.93211 0.91990 1.00544 1.16660 1.04397 0.90360 0.93718 1.24750 0.94180 0.92205 0.93995 1.81323 1.07800 1.09738 1.07159 0.91739 0.91385 0.90466 0.90977 0.91663 0.88012 0.83642 0.92813 0.94335 0.92602 0.81617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.36 -5.67 10.22 -39.27 -0.40 -6.07 16 4 C 0.43 7.68 7.19 36.00 0.26 7.94 16 5 O -0.48 -9.90 11.55 -18.75 -0.22 -10.12 16 6 C 0.07 1.28 5.56 -4.98 -0.03 1.26 16 7 N -0.45 -8.99 4.31 -175.51 -0.76 -9.75 16 8 C 0.18 4.56 3.73 -4.98 -0.02 4.54 16 9 C -0.53 -13.92 8.61 -34.44 -0.30 -14.22 16 10 H 0.07 1.66 7.35 -52.48 -0.39 1.28 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -25.54 13.29 55.43 0.74 -24.80 16 13 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.30 5.63 4.80 -154.74 -0.74 4.88 16 18 N -0.19 -3.86 8.29 31.41 0.26 -3.60 16 19 N -0.18 -3.30 11.46 32.84 0.38 -2.92 16 20 C 0.08 1.05 7.36 -17.36 -0.13 0.92 16 21 Cl -0.01 -0.13 29.13 -51.86 -1.51 -1.64 16 22 C -0.05 -0.54 9.75 -38.76 -0.38 -0.92 16 23 C -0.03 -0.49 5.68 -106.32 -0.60 -1.10 16 24 C 0.27 3.78 13.03 -22.42 -0.29 3.49 16 25 N -0.38 -5.82 18.55 41.90 0.78 -5.04 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.10 1.50 6.19 -51.93 -0.32 1.18 16 32 H 0.15 2.49 7.07 -51.93 -0.37 2.13 16 33 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 34 H 0.04 1.05 5.77 -51.93 -0.30 0.75 16 35 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 36 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -31.12 336.31 -5.84 -36.96 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -3.44 Total: -2.21 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.71 Total: 8.42 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.39 Total: -46.11 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.62 Total: -16.19 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.51 Total: -1.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.12 -5.84 -36.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.007 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds