Wall clock time and date at job start Tue Mar 31 2020 13:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45198 * 109.46956 * 2 1 4 4 C 1.34234 * 116.99974 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00240 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47294 * 183.86205 * 6 4 3 8 8 C 1.46900 * 111.00087 * 64.38775 * 7 6 4 9 9 C 1.50695 * 109.46902 * 71.71439 * 8 7 6 10 10 H 1.08004 * 120.00270 * 355.22427 * 9 8 7 11 11 C 1.37878 * 120.00091 * 175.22399 * 9 8 7 12 12 N 1.31514 * 119.99734 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00256 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46939 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46929 * 119.99752 * 13 11 9 16 16 H 1.48489 * 109.47471 * 240.00189 * 13 11 9 17 17 C 1.38525 * 110.99390 * 300.43760 * 7 6 4 18 18 N 1.32536 * 120.26556 * 109.97011 * 17 7 6 19 19 N 1.28273 * 122.22615 * 179.97438 * 18 17 7 20 20 C 1.31976 * 122.65230 * 359.70237 * 19 18 17 21 21 Cl 1.73599 * 119.92290 * 180.32474 * 20 19 18 22 22 C 1.38596 * 120.15373 * 0.58514 * 20 19 18 23 23 C 1.40078 * 117.87796 * 359.43816 * 22 20 19 24 24 C 1.43199 * 121.19256 * 180.29492 * 23 22 20 25 25 N 6.61583 * 120.40161 * 28.44448 * 2 1 3 26 26 H 1.09000 * 109.47011 * 299.99959 * 1 2 3 27 27 H 1.09003 * 109.47105 * 59.99674 * 1 2 3 28 28 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47011 * 240.00041 * 2 1 3 30 30 H 1.08996 * 109.46968 * 119.99988 * 2 1 3 31 31 H 1.09004 * 109.47416 * 63.85715 * 6 4 3 32 32 H 1.09001 * 109.47027 * 303.85711 * 6 4 3 33 33 H 1.08997 * 109.46810 * 191.71049 * 8 7 6 34 34 H 1.08999 * 109.46893 * 311.71533 * 8 7 6 35 35 H 0.97004 * 119.99903 * 180.02562 * 12 11 9 36 36 H 1.08003 * 121.05783 * 179.71078 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3848 2.8618 -0.0940 8 6 5.8005 2.2754 -1.3752 9 6 5.5431 3.2610 -2.4857 10 1 5.0434 4.1948 -2.2740 11 6 5.9455 2.9707 -3.7721 12 7 6.5534 1.8334 -4.0300 13 14 5.6258 4.1921 -5.1489 14 1 4.9314 5.3850 -4.6009 15 1 6.9176 4.6060 -5.7532 16 1 4.7748 3.5567 -6.1866 17 6 5.9146 2.1528 0.9716 18 7 6.4466 0.9544 0.7781 19 7 6.9480 0.2657 1.7371 20 6 6.9779 0.6973 2.9839 21 17 7.6817 -0.2908 4.2257 22 6 6.4439 1.9352 3.3051 23 6 5.8927 2.6997 2.2687 24 6 5.3275 3.9913 2.5195 25 7 4.8780 5.0173 2.7179 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6416 3.4457 0.9230 32 1 3.5301 3.4925 -0.8529 33 1 6.8639 2.0390 -1.3385 34 1 5.2316 1.3640 -1.5591 35 1 6.8369 1.6293 -4.9350 36 1 6.4564 2.3008 4.3213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159694.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:03 Heat of formation + Delta-G solvation = 6.853368 kcal Electronic energy + Delta-G solvation = -25276.071039 eV Core-core repulsion = 21401.757694 eV Total energy + Delta-G solvation = -3874.313345 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.82585 -41.55371 -39.14321 -38.01719 -37.90176 -37.18732 -34.92665 -34.47357 -32.96378 -32.40008 -30.14309 -28.35585 -27.05004 -25.32719 -24.48756 -23.31001 -22.02844 -20.86616 -19.54549 -19.08727 -18.61658 -18.03273 -17.62858 -17.14841 -17.01116 -16.83141 -16.37778 -15.60092 -15.46675 -15.20759 -14.84193 -14.63086 -14.46400 -14.29560 -14.03649 -13.67032 -13.58195 -13.27812 -13.15243 -12.89376 -12.82117 -12.72517 -12.61554 -12.52846 -12.37963 -12.10038 -12.05363 -11.58098 -11.55741 -11.36080 -11.17879 -10.80048 -10.60911 -9.59255 -8.21030 -6.34186 -1.02124 -0.49262 0.40826 1.03149 1.30402 1.42969 1.44130 1.53145 1.56792 1.62013 2.12729 2.29173 2.36980 2.49230 2.97274 3.12584 3.23645 3.52729 3.63105 3.79918 3.91331 3.95760 4.05983 4.07821 4.26980 4.30567 4.49199 4.78273 4.89644 4.95956 5.07954 5.18970 5.37488 5.49751 5.64331 5.87838 6.09601 6.18677 6.61109 6.78800 7.34235 7.40817 8.90038 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.004984 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.147430 B = 5617.057271 C = 6772.903309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.426 3.574 5 O -0.508 6.508 6 C 0.074 3.926 7 N -0.452 5.452 8 C 0.211 3.789 9 C -0.536 4.536 10 H 0.076 0.924 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.969 3.031 14 H -0.256 1.256 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.284 3.716 18 N -0.239 5.239 19 N -0.220 5.220 20 C 0.083 3.917 21 Cl 0.020 6.980 22 C -0.014 4.014 23 C -0.026 4.026 24 C 0.279 3.721 25 N -0.392 5.392 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.146 0.854 33 H 0.014 0.986 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -1.282 16.895 18.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.274 6.274 4 C 0.267 3.733 5 O -0.395 6.395 6 C -0.053 4.053 7 N -0.170 5.170 8 C 0.086 3.914 9 C -0.574 4.574 10 H 0.094 0.906 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.794 3.206 14 H -0.179 1.179 15 H -0.208 1.208 16 H -0.206 1.206 17 C 0.044 3.956 18 N -0.086 5.086 19 N -0.065 5.065 20 C -0.090 4.090 21 Cl 0.048 6.952 22 C -0.046 4.046 23 C -0.043 4.043 24 C -0.037 4.037 25 N -0.068 5.068 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.032 0.968 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.309 -0.913 16.060 17.669 hybrid contribution 0.126 -0.205 -0.380 0.450 sum -7.183 -1.118 15.680 17.283 Atomic orbital electron populations 1.21807 0.89604 1.04476 1.03915 1.23271 0.97553 0.79288 1.01955 1.86494 1.23411 1.33750 1.83718 1.25107 0.81572 0.94039 0.72559 1.90814 1.60311 1.43490 1.44916 1.22162 0.84243 0.90798 1.08130 1.59748 1.07476 1.46003 1.03724 1.19587 0.95810 0.93865 0.82107 1.21492 1.39219 1.04350 0.92363 0.90560 1.25883 0.94561 0.97184 1.01497 1.70147 1.40323 1.24765 1.21471 0.85334 0.77927 0.79010 0.78373 1.17912 1.20785 1.20590 1.21926 0.93899 0.88771 0.90998 1.73897 1.09376 1.02717 1.22632 1.72682 1.08842 1.27303 0.97697 1.23466 1.00546 0.93250 0.91738 1.98423 1.81380 1.69304 1.46099 1.22599 0.89801 0.90151 1.02034 1.16569 1.04460 0.90634 0.92656 1.24487 0.93813 0.91761 0.93635 1.81357 1.08078 1.09809 1.07554 0.90572 0.91405 0.88061 0.92695 0.91410 0.85147 0.83685 0.96801 0.97505 0.92637 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 10.29 71.98 0.74 -1.72 16 2 C 0.05 1.39 6.19 71.98 0.45 1.84 16 3 O -0.36 -11.23 10.22 -51.45 -0.53 -11.75 16 4 C 0.43 15.73 7.19 71.23 0.51 16.24 16 5 O -0.51 -22.14 11.55 21.96 0.25 -21.89 16 6 C 0.07 2.58 5.56 85.56 0.48 3.05 16 7 N -0.45 -18.66 4.31 -709.18 -3.05 -21.72 16 8 C 0.21 11.03 3.73 85.56 0.32 11.35 16 9 C -0.54 -28.87 8.61 25.60 0.22 -28.65 16 10 H 0.08 3.85 7.35 -2.91 -0.02 3.83 16 11 C 0.01 0.45 5.46 84.65 0.46 0.91 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 13 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 C 0.28 10.69 4.80 133.59 0.64 11.33 16 18 N -0.24 -10.15 8.29 -54.55 -0.45 -10.60 16 19 N -0.22 -8.00 11.46 -50.00 -0.57 -8.57 16 20 C 0.08 2.15 7.36 84.76 0.62 2.78 16 21 Cl 0.02 0.39 29.13 -2.72 -0.08 0.32 16 22 C -0.01 -0.29 9.75 22.80 0.22 -0.07 16 23 C -0.03 -0.72 5.68 -20.96 -0.12 -0.84 16 24 C 0.28 7.30 13.03 88.31 1.15 8.45 16 25 N -0.39 -10.88 18.55 19.02 0.35 -10.53 16 26 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 30 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 31 H 0.13 3.69 6.19 -2.39 -0.01 3.67 16 32 H 0.15 4.99 7.07 -2.39 -0.02 4.97 16 33 H 0.01 0.82 7.58 -2.39 -0.02 0.80 16 34 H 0.01 0.41 5.77 -2.39 -0.01 0.40 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 36 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -71.89 336.31 5.07 -66.82 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.14 Total: 3.83 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 5.69 Total: 24.68 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.44 Total: -106.98 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.27 Total: -33.64 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.32 kcal Total: -71.89 5.07 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159694.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.672 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds