Wall clock time and date at job start Tue Mar 31 2020 13:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47082 * 2 1 4 4 C 1.34227 * 117.00302 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99756 * 354.85320 * 4 3 2 6 6 C 1.50700 * 120.00047 * 174.85272 * 4 3 2 7 7 N 1.46900 * 109.47027 * 185.91930 * 6 4 3 8 8 C 1.46892 * 111.00093 * 200.09026 * 7 6 4 9 9 C 1.50704 * 109.47171 * 170.00339 * 8 7 6 10 10 H 1.08001 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99987 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99699 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47160 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47053 * 119.99738 * 13 11 9 16 16 H 1.48503 * 109.46649 * 239.99359 * 13 11 9 17 17 C 1.38011 * 110.99717 * 76.14037 * 7 6 4 18 18 N 1.32959 * 120.63420 * 57.33346 * 17 7 6 19 19 C 1.31710 * 120.89199 * 180.31176 * 18 17 7 20 20 N 1.31903 * 122.25266 * 359.68080 * 19 18 17 21 21 C 1.32381 * 121.17009 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 120.52343 * 180.02562 * 21 20 19 23 23 C 1.39961 * 118.95554 * 359.97438 * 21 20 19 24 24 C 1.43202 * 121.00381 * 179.97438 * 23 21 20 25 25 N 5.53590 * 130.27354 * 355.82686 * 3 1 2 26 26 H 1.09001 * 109.47090 * 60.00190 * 1 2 3 27 27 H 1.09003 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47387 * 299.99680 * 1 2 3 29 29 H 1.09004 * 109.47225 * 240.00152 * 2 1 3 30 30 H 1.09001 * 109.47090 * 119.99810 * 2 1 3 31 31 H 1.09001 * 109.46976 * 65.92327 * 6 4 3 32 32 H 1.08996 * 109.47319 * 305.91874 * 6 4 3 33 33 H 1.09004 * 109.47679 * 290.00235 * 8 7 6 34 34 H 1.09003 * 109.47128 * 50.00347 * 8 7 6 35 35 H 0.97004 * 119.99830 * 179.97438 * 12 11 9 36 36 H 1.08001 * 118.87467 * 179.70434 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0802 0.5909 0.0929 6 6 3.9213 2.9323 -0.1177 7 7 5.3829 2.8467 -0.2368 8 6 6.0159 4.1233 0.1201 9 6 7.5071 3.9326 0.2252 10 1 7.9411 2.9601 0.0453 11 6 8.3172 4.9993 0.5520 12 7 7.7886 6.1834 0.7716 13 14 10.1656 4.7626 0.6830 14 1 10.5052 3.3467 0.3917 15 1 10.8484 5.6472 -0.2950 16 1 10.6124 5.1060 2.0570 17 6 5.7532 2.4487 -1.5053 18 7 5.3717 3.1445 -2.5721 19 6 5.7170 2.7658 -3.7854 20 7 6.4548 1.6948 -4.0053 21 6 6.8863 0.9428 -3.0049 22 17 7.8570 -0.4630 -3.3134 23 6 6.5484 1.2996 -1.6943 24 6 6.9910 0.5173 -0.5795 25 7 7.3417 -0.1033 0.3074 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6623 3.5095 0.7700 32 1 3.5128 3.4221 -1.0015 33 1 5.7978 4.8646 -0.6487 34 1 5.6252 4.4673 1.0778 35 1 8.3586 6.9338 1.0019 36 1 5.3851 3.3526 -4.6292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157159725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:09 Heat of formation + Delta-G solvation = 8.298449 kcal Electronic energy + Delta-G solvation = -25271.593683 eV Core-core repulsion = 21397.343002 eV Total energy + Delta-G solvation = -3874.250681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27718 -40.20536 -37.65335 -36.90865 -36.19291 -35.87299 -33.14771 -32.65440 -31.99387 -31.57345 -28.74583 -26.48531 -25.17540 -24.13758 -23.18222 -21.69189 -20.79737 -19.02096 -18.22943 -17.71777 -17.45733 -16.62902 -16.32092 -15.83016 -15.55331 -15.16833 -14.65773 -14.29717 -14.23674 -13.71815 -13.33177 -13.12513 -12.92733 -12.79796 -12.53508 -12.33306 -12.25332 -12.16095 -11.90048 -11.67712 -11.65531 -11.60173 -11.10524 -10.97893 -10.87349 -10.54639 -10.33137 -10.30174 -10.09140 -9.57375 -9.47745 -9.19517 -8.70526 -8.20446 -6.25985 -4.29461 0.47577 0.87999 1.47956 2.37321 2.62332 3.15323 3.21111 3.29547 3.30188 3.36213 3.71976 3.99989 4.05971 4.17031 4.28279 4.53149 4.75383 4.80067 4.90696 5.05116 5.12071 5.15039 5.21966 5.41501 5.52670 5.55822 5.62573 5.80211 5.91288 6.48058 6.60230 6.67486 6.90411 7.27995 7.51697 7.76017 7.91046 7.93248 8.02218 8.08182 8.74922 9.36645 10.84050 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.005639 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.064328 B = 4964.241804 C = 6415.874770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.362 6.362 4 C 0.453 3.547 5 O -0.484 6.484 6 C 0.064 3.936 7 N -0.484 5.484 8 C 0.201 3.799 9 C -0.524 4.524 10 H 0.063 0.937 11 C 0.068 3.932 12 N -0.888 5.888 13 Si 0.894 3.106 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.444 3.556 18 N -0.540 5.540 19 C 0.343 3.657 20 N -0.524 5.524 21 C 0.256 3.744 22 Cl -0.004 7.004 23 C -0.071 4.071 24 C 0.284 3.716 25 N -0.391 5.391 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.025 0.975 34 H 0.052 0.948 35 H 0.265 0.735 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -7.756 -7.845 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.280 6.280 4 C 0.294 3.706 5 O -0.368 6.368 6 C -0.064 4.064 7 N -0.209 5.209 8 C 0.080 3.920 9 C -0.563 4.563 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.526 5.526 13 Si 0.721 3.279 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.204 3.796 18 N -0.258 5.258 19 C 0.054 3.946 20 N -0.242 5.242 21 C 0.081 3.919 22 Cl 0.025 6.975 23 C -0.082 4.082 24 C -0.033 4.033 25 N -0.066 5.066 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -10.907 -8.758 -6.807 15.556 hybrid contribution 1.050 0.166 -0.049 1.064 sum -9.857 -8.591 -6.856 14.764 Atomic orbital electron populations 1.21793 0.92758 1.02756 1.03487 1.22962 0.95156 0.80540 1.02497 1.86482 1.24763 1.32076 1.84660 1.23926 0.80425 0.93023 0.73258 1.90694 1.60127 1.42782 1.43223 1.21684 0.87883 0.90605 1.06236 1.59731 1.05879 1.38110 1.17229 1.20117 0.94694 0.79798 0.97409 1.21057 0.90246 0.96089 1.48877 0.91923 1.24860 0.99197 0.94823 0.94648 1.69929 1.35776 1.00339 1.46541 0.86476 0.84702 0.78657 0.78069 1.19439 1.20668 1.20510 1.19977 0.84891 0.85206 0.89485 1.68657 1.26000 1.31122 1.00037 1.24928 0.87284 0.88365 0.93976 1.67872 1.14004 1.07676 1.34601 1.22007 0.91601 0.90262 0.88054 1.98438 1.67230 1.35552 1.96294 1.17179 1.04793 0.97472 0.88765 1.24154 0.93663 0.92939 0.92513 1.81109 1.08089 1.09567 1.07859 0.91529 0.90448 0.91448 0.91594 0.91229 0.85299 0.88594 0.95755 0.93058 0.92493 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.70 6.21 37.16 0.23 0.93 16 3 O -0.36 -4.95 10.22 -39.25 -0.40 -5.35 16 4 C 0.45 7.31 7.74 36.01 0.28 7.59 16 5 O -0.48 -9.22 14.39 -18.75 -0.27 -9.49 16 6 C 0.06 1.02 5.56 -4.98 -0.03 1.00 16 7 N -0.48 -9.76 3.51 -175.47 -0.62 -10.37 16 8 C 0.20 4.68 4.66 -4.98 -0.02 4.65 16 9 C -0.52 -13.91 8.72 -34.44 -0.30 -14.21 16 10 H 0.06 1.72 6.47 -52.49 -0.34 1.38 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 12 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 13 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.44 8.57 3.85 -154.78 -0.60 7.97 16 18 N -0.54 -9.14 9.33 -13.58 -0.13 -9.27 16 19 C 0.34 4.81 12.26 -92.13 -1.13 3.68 16 20 N -0.52 -8.02 10.41 -11.39 -0.12 -8.13 16 21 C 0.26 4.34 7.37 -16.67 -0.12 4.21 16 22 Cl 0.00 -0.06 28.32 -51.86 -1.47 -1.53 16 23 C -0.07 -1.37 5.21 -106.28 -0.55 -1.93 16 24 C 0.28 6.01 12.18 -22.41 -0.27 5.74 16 25 N -0.39 -8.71 18.55 41.91 0.78 -7.93 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.13 1.83 7.73 -51.93 -0.40 1.43 16 32 H 0.10 1.38 7.37 -51.93 -0.38 1.00 16 33 H 0.02 0.59 7.85 -51.93 -0.41 0.19 16 34 H 0.05 1.23 7.83 -51.93 -0.41 0.83 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -31.30 342.67 -7.18 -38.48 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -3.61 Total: -4.64 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: -2.23 Total: 20.58 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 0.65 Total: -59.54 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.67 Total: -14.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.47 Total: -1.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.30 -7.18 -38.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.783 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds