Wall clock time and date at job start Tue Mar 31 2020 13:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45198 * 109.47082 * 2 1 4 4 C 1.34227 * 117.00302 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99756 * 354.85320 * 4 3 2 6 6 C 1.50700 * 120.00047 * 174.85272 * 4 3 2 7 7 N 1.46900 * 109.47027 * 185.91930 * 6 4 3 8 8 C 1.46892 * 111.00093 * 200.09026 * 7 6 4 9 9 C 1.50704 * 109.47171 * 170.00339 * 8 7 6 10 10 H 1.08001 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99987 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99699 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47160 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47053 * 119.99738 * 13 11 9 16 16 H 1.48503 * 109.46649 * 239.99359 * 13 11 9 17 17 C 1.38011 * 110.99717 * 76.14037 * 7 6 4 18 18 N 1.32959 * 120.63420 * 57.33346 * 17 7 6 19 19 C 1.31710 * 120.89199 * 180.31176 * 18 17 7 20 20 N 1.31903 * 122.25266 * 359.68080 * 19 18 17 21 21 C 1.32381 * 121.17009 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 120.52343 * 180.02562 * 21 20 19 23 23 C 1.39961 * 118.95554 * 359.97438 * 21 20 19 24 24 C 1.43202 * 121.00381 * 179.97438 * 23 21 20 25 25 N 5.53590 * 130.27354 * 355.82686 * 3 1 2 26 26 H 1.09001 * 109.47090 * 60.00190 * 1 2 3 27 27 H 1.09003 * 109.46577 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47387 * 299.99680 * 1 2 3 29 29 H 1.09004 * 109.47225 * 240.00152 * 2 1 3 30 30 H 1.09001 * 109.47090 * 119.99810 * 2 1 3 31 31 H 1.09001 * 109.46976 * 65.92327 * 6 4 3 32 32 H 1.08996 * 109.47319 * 305.91874 * 6 4 3 33 33 H 1.09004 * 109.47679 * 290.00235 * 8 7 6 34 34 H 1.09003 * 109.47128 * 50.00347 * 8 7 6 35 35 H 0.97004 * 119.99830 * 179.97438 * 12 11 9 36 36 H 1.08001 * 118.87467 * 179.70434 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0802 0.5909 0.0929 6 6 3.9213 2.9323 -0.1177 7 7 5.3829 2.8467 -0.2368 8 6 6.0159 4.1233 0.1201 9 6 7.5071 3.9326 0.2252 10 1 7.9411 2.9601 0.0453 11 6 8.3172 4.9993 0.5520 12 7 7.7886 6.1834 0.7716 13 14 10.1656 4.7626 0.6830 14 1 10.5052 3.3467 0.3917 15 1 10.8484 5.6472 -0.2950 16 1 10.6124 5.1060 2.0570 17 6 5.7532 2.4487 -1.5053 18 7 5.3717 3.1445 -2.5721 19 6 5.7170 2.7658 -3.7854 20 7 6.4548 1.6948 -4.0053 21 6 6.8863 0.9428 -3.0049 22 17 7.8570 -0.4630 -3.3134 23 6 6.5484 1.2996 -1.6943 24 6 6.9910 0.5173 -0.5795 25 7 7.3417 -0.1033 0.3074 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6623 3.5095 0.7700 32 1 3.5128 3.4221 -1.0015 33 1 5.7978 4.8646 -0.6487 34 1 5.6252 4.4673 1.0778 35 1 8.3586 6.9338 1.0019 36 1 5.3851 3.3526 -4.6292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157159725.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:09 Heat of formation + Delta-G solvation = -10.141255 kcal Electronic energy + Delta-G solvation = -25272.393289 eV Core-core repulsion = 21397.343002 eV Total energy + Delta-G solvation = -3875.050287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.61427 -41.43409 -39.02763 -38.20190 -37.54822 -37.39659 -34.96912 -34.13932 -33.19757 -32.63474 -30.34091 -28.07166 -26.48266 -25.69647 -24.26269 -23.16193 -22.03697 -20.48500 -19.60430 -19.14045 -18.70042 -18.18144 -17.74379 -17.07960 -17.03029 -16.56905 -16.33261 -15.57493 -15.41859 -15.07534 -14.70749 -14.59584 -14.42168 -14.18460 -13.92322 -13.74438 -13.60816 -13.50915 -13.31071 -13.00171 -12.86589 -12.82550 -12.71472 -12.51176 -12.40849 -12.23696 -11.76519 -11.56022 -11.50310 -11.31201 -10.83386 -10.67568 -10.62099 -9.78333 -8.30612 -6.38382 -0.85873 -0.49072 0.18909 1.11613 1.31731 1.35558 1.42184 1.48819 1.57987 1.88404 2.28503 2.38871 2.56031 2.62738 2.94310 3.05474 3.15643 3.67357 3.71005 3.88479 3.98468 4.08730 4.15757 4.29414 4.33608 4.75477 4.80793 4.90671 4.92768 5.10957 5.13105 5.37787 5.40230 5.43739 5.78815 5.90543 6.12696 6.45371 6.64153 6.70184 6.74970 7.30358 8.79619 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.005639 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.064328 B = 4964.241804 C = 6415.874770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.460 3.540 5 O -0.517 6.517 6 C 0.063 3.937 7 N -0.502 5.502 8 C 0.220 3.780 9 C -0.534 4.534 10 H 0.048 0.952 11 C 0.028 3.972 12 N -0.912 5.912 13 Si 0.942 3.058 14 H -0.279 1.279 15 H -0.270 1.270 16 H -0.275 1.275 17 C 0.436 3.564 18 N -0.548 5.548 19 C 0.356 3.644 20 N -0.518 5.518 21 C 0.263 3.737 22 Cl 0.012 6.988 23 C -0.104 4.104 24 C 0.296 3.704 25 N -0.428 5.428 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.115 0.885 33 H 0.013 0.987 34 H 0.039 0.961 35 H 0.269 0.731 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -7.602 -9.469 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.019 4.019 3 O -0.273 6.273 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.064 4.064 7 N -0.227 5.227 8 C 0.098 3.902 9 C -0.573 4.573 10 H 0.066 0.934 11 C -0.173 4.173 12 N -0.551 5.551 13 Si 0.767 3.233 14 H -0.204 1.204 15 H -0.195 1.195 16 H -0.200 1.200 17 C 0.196 3.804 18 N -0.266 5.266 19 C 0.068 3.932 20 N -0.235 5.235 21 C 0.086 3.914 22 Cl 0.041 6.959 23 C -0.115 4.115 24 C -0.021 4.021 25 N -0.104 5.104 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.133 0.867 33 H 0.031 0.969 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -11.931 -8.601 -8.446 16.961 hybrid contribution 1.263 0.064 0.351 1.312 sum -10.668 -8.537 -8.095 15.882 Atomic orbital electron populations 1.21811 0.89842 1.04384 1.03934 1.23278 0.97361 0.79141 1.02158 1.86480 1.23143 1.33721 1.83992 1.23863 0.81025 0.92526 0.72393 1.90690 1.61054 1.43736 1.44958 1.21791 0.85711 0.91135 1.07806 1.59442 1.08140 1.36441 1.18645 1.19664 0.93216 0.80996 0.96339 1.21275 0.92175 0.95349 1.48479 0.93417 1.25461 1.02391 0.94774 0.94633 1.69986 1.36895 1.00811 1.47420 0.85745 0.81100 0.78024 0.78397 1.20418 1.19518 1.20004 1.19975 0.85142 0.85477 0.89792 1.68719 1.26409 1.31020 1.00427 1.26035 0.85168 0.87633 0.94319 1.68070 1.14040 1.07832 1.33534 1.22131 0.91056 0.90610 0.87584 1.98443 1.66671 1.34688 1.96130 1.17331 1.06612 0.98385 0.89163 1.24528 0.92721 0.92344 0.92472 1.81082 1.09650 1.10917 1.08784 0.90898 0.88211 0.91142 0.91701 0.91946 0.83853 0.86698 0.96877 0.94256 0.92218 0.72223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.05 1.15 6.21 71.98 0.45 1.60 16 3 O -0.36 -9.36 10.22 -51.39 -0.53 -9.88 16 4 C 0.46 14.67 7.74 71.24 0.55 15.22 16 5 O -0.52 -19.91 14.39 21.97 0.32 -19.59 16 6 C 0.06 1.97 5.56 85.56 0.48 2.44 16 7 N -0.50 -20.25 3.51 -709.08 -2.49 -22.74 16 8 C 0.22 10.34 4.66 85.56 0.40 10.74 16 9 C -0.53 -28.62 8.72 25.60 0.22 -28.40 16 10 H 0.05 2.66 6.47 -2.91 -0.02 2.65 16 11 C 0.03 1.53 5.46 84.65 0.46 1.99 16 12 N -0.91 -50.43 13.29 21.45 0.28 -50.14 16 13 Si 0.94 43.71 29.54 68.60 2.03 45.73 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 C 0.44 16.57 3.85 133.70 0.51 17.09 16 18 N -0.55 -17.55 9.33 -196.87 -1.84 -19.38 16 19 C 0.36 8.89 12.26 180.88 2.22 11.10 16 20 N -0.52 -14.57 10.41 -189.96 -1.98 -16.55 16 21 C 0.26 8.58 7.37 85.03 0.63 9.20 16 22 Cl 0.01 0.34 28.32 -2.72 -0.08 0.27 16 23 C -0.10 -3.99 5.21 -20.94 -0.11 -4.10 16 24 C 0.30 12.71 12.18 88.31 1.08 13.79 16 25 N -0.43 -19.60 18.55 19.03 0.35 -19.24 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.39 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 31 H 0.14 4.00 7.73 -2.39 -0.02 3.98 16 32 H 0.12 3.15 7.37 -2.39 -0.02 3.13 16 33 H 0.01 0.65 7.85 -2.38 -0.02 0.63 16 34 H 0.04 1.92 7.83 -2.39 -0.02 1.90 16 35 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 36 H 0.26 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -67.89 342.67 4.84 -63.06 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: 1.14 Total: -1.03 kcal Atomic # 6 Polarization: 41.87 SS G_CDS: 7.62 Total: 49.50 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.67 Total: -128.05 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.21 Total: -29.47 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.08 Total: 0.27 kcal Total: -67.89 4.84 -63.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157159725.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.916 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds