Wall clock time and date at job start Tue Mar 31 2020 13:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00251 * 69.57375 * 3 2 1 5 5 N 3.51035 * 140.68841 * 69.57198 * 2 1 3 6 6 C 1.40716 * 120.00004 * 249.29560 * 3 2 1 7 7 C 1.39462 * 119.99711 * 354.51234 * 6 3 2 8 8 H 1.07997 * 119.99637 * 342.28822 * 7 6 3 9 9 C 1.41840 * 119.99755 * 162.28799 * 7 6 3 10 10 N 1.29794 * 120.00014 * 352.41197 * 9 7 6 11 11 Si 1.86794 * 119.99963 * 172.41109 * 9 7 6 12 12 H 1.48506 * 109.47235 * 90.00018 * 11 9 7 13 13 H 1.48497 * 109.47251 * 209.99925 * 11 9 7 14 14 H 1.48501 * 109.47160 * 330.00143 * 11 9 7 15 15 N 1.38328 * 120.00260 * 174.51195 * 6 3 2 16 16 C 1.39274 * 119.99936 * 117.89598 * 15 6 3 17 17 C 1.39503 * 119.45448 * 353.58841 * 16 15 6 18 18 C 1.38036 * 119.61404 * 179.74142 * 17 16 15 19 19 C 1.39365 * 118.40150 * 0.53621 * 18 17 16 20 20 N 1.37786 * 133.58266 * 179.73672 * 19 18 17 21 21 H 0.96996 * 125.11334 * 359.95309 * 20 19 18 22 22 C 1.36599 * 109.78134 * 179.97438 * 20 19 18 23 23 C 1.34390 * 109.91541 * 359.97438 * 22 20 19 24 24 N 1.48020 * 126.44905 * 180.02562 * 23 22 20 25 25 O 1.31705 * 120.00092 * 359.97438 * 24 23 22 26 26 O 1.31697 * 120.00232 * 179.97438 * 24 23 22 27 27 C 1.40600 * 119.08604 * 359.70921 * 19 18 17 28 28 N 1.32041 * 119.45214 * 173.85291 * 16 15 6 29 29 H 0.96998 * 119.99688 * 185.04574 * 10 9 7 30 30 H 0.97002 * 120.00108 * 297.90494 * 15 6 3 31 31 H 1.08001 * 120.19310 * 0.02562 * 17 16 15 32 32 H 1.07995 * 120.80242 * 180.24521 * 18 17 16 33 33 H 1.07995 * 125.03757 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2842 -0.4318 -1.1621 5 7 3.8520 -0.7762 -2.0841 6 6 3.2714 0.4318 1.1399 7 6 2.5785 0.9655 2.2262 8 1 1.5640 1.3140 2.1012 9 6 3.2064 1.0507 3.4952 10 7 4.3669 0.5007 3.6834 11 14 2.3632 1.9546 4.8957 12 1 1.5127 1.0046 5.6570 13 1 3.3890 2.5342 5.7995 14 1 1.5175 3.0434 4.3440 15 7 4.6499 0.3262 1.1831 16 6 5.4328 1.4722 1.2997 17 6 4.8260 2.7268 1.2368 18 6 5.5980 3.8647 1.3574 19 6 6.9733 3.7177 1.5283 20 7 8.0133 4.6098 1.6731 21 1 7.9235 5.5756 1.6762 22 6 9.1899 3.9298 1.8113 23 6 8.9621 2.6062 1.7630 24 7 9.9769 1.5346 1.8755 25 8 11.2463 1.8444 2.0400 26 8 9.6104 0.2712 1.8110 27 6 7.5214 2.4238 1.5778 28 7 6.7377 1.3533 1.4626 29 1 4.7632 0.4952 4.5687 30 1 5.0714 -0.5459 1.1320 31 1 3.7578 2.8072 1.0993 32 1 5.1478 4.8455 1.3155 33 1 10.1593 4.3879 1.9402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158212975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:07 Heat of formation + Delta-G solvation = 161.918817 kcal Electronic energy + Delta-G solvation = -25808.071505 eV Core-core repulsion = 21839.374809 eV Total energy + Delta-G solvation = -3968.696696 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.90554 -39.08485 -38.11992 -36.81708 -35.26662 -34.80322 -33.87822 -33.61406 -32.87111 -31.08661 -30.27589 -28.23773 -27.26349 -26.14648 -23.56076 -22.98181 -21.37826 -20.74781 -19.24522 -18.63741 -17.81226 -17.43831 -17.23638 -16.73555 -16.44302 -16.28545 -15.86490 -15.31136 -14.72128 -14.54663 -13.89293 -13.62552 -13.02862 -12.98062 -12.91813 -12.82031 -12.65957 -12.42210 -11.91479 -11.80048 -11.70952 -11.61753 -11.15685 -11.00509 -10.95496 -10.80866 -10.70353 -10.51360 -10.27613 -10.24456 -9.88968 -9.18412 -8.66217 -8.38621 -7.87888 -7.03687 -5.61407 -0.18800 1.03994 1.40911 1.51703 2.09943 2.25086 2.57373 2.58975 2.64358 2.72838 3.24868 3.43642 3.78911 3.97729 3.99404 4.08585 4.15010 4.27382 4.38929 4.67435 4.84854 5.00322 5.04084 5.12750 5.45784 5.62578 5.74992 5.95370 6.03897 6.17866 6.23972 6.26942 6.54285 6.81808 6.90257 7.08113 7.22619 7.49344 7.53624 7.93628 8.10850 8.62673 8.88225 9.02174 9.05989 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.004651 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.665293 B = 6019.151575 C = 7000.789200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.324 3.676 3 C -0.304 4.304 4 C 0.306 3.694 5 N -0.525 5.525 6 C 0.371 3.629 7 C -0.375 4.375 8 H 0.115 0.885 9 C 0.066 3.934 10 N -0.704 5.704 11 Si 0.922 3.078 12 H -0.255 1.255 13 H -0.268 1.268 14 H -0.246 1.246 15 N -0.629 5.629 16 C 0.466 3.534 17 C -0.179 4.179 18 C -0.038 4.038 19 C -0.034 4.034 20 N -0.543 5.543 21 H 0.431 0.569 22 C 0.181 3.819 23 C -0.096 4.096 24 N 0.029 4.971 25 O -0.236 6.236 26 O -0.154 6.154 27 C 0.189 3.811 28 N -0.503 5.503 29 H 0.306 0.694 30 H 0.413 0.587 31 H 0.159 0.841 32 H 0.139 0.861 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 14.127 6.138 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 C 0.016 3.984 3 C -0.322 4.322 4 C -0.002 4.002 5 N -0.207 5.207 6 C 0.267 3.733 7 C -0.402 4.402 8 H 0.133 0.867 9 C -0.167 4.167 10 N -0.322 5.322 11 Si 0.743 3.257 12 H -0.179 1.179 13 H -0.192 1.192 14 H -0.169 1.169 15 N -0.253 5.253 16 C 0.223 3.777 17 C -0.204 4.204 18 C -0.066 4.066 19 C -0.141 4.141 20 N -0.147 5.147 21 H 0.271 0.729 22 C 0.039 3.961 23 C -0.197 4.197 24 N 0.498 4.502 25 O -0.411 6.411 26 O -0.350 6.350 27 C 0.053 3.947 28 N -0.221 5.221 29 H 0.118 0.882 30 H 0.251 0.749 31 H 0.176 0.824 32 H 0.157 0.843 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.470 13.344 4.835 15.211 hybrid contribution 0.192 0.906 1.198 1.514 sum 5.661 14.250 6.033 16.478 Atomic orbital electron populations 1.81081 1.12172 1.17959 1.09880 1.24650 0.91256 0.90611 0.91873 1.12786 0.83043 1.42654 0.93730 1.25182 0.92554 0.90711 0.91767 1.81108 1.09532 1.18041 1.12036 1.16705 0.79610 0.87597 0.89380 1.20735 1.00762 1.27535 0.91203 0.86685 1.26690 0.94233 0.94071 1.01731 1.69294 1.12265 1.23903 1.26717 0.85973 0.80189 0.80756 0.78821 1.17938 1.19193 1.16923 1.41325 1.03446 1.06508 1.74022 1.17846 0.86227 0.86498 0.87111 1.21733 1.02478 0.90629 1.05594 1.20234 0.88374 0.99664 0.98291 1.18681 0.90859 0.88868 1.15725 1.41559 1.04507 1.09216 1.59432 0.72907 1.21592 0.91541 0.89601 0.93407 1.19940 0.86095 0.86304 1.27369 1.49318 1.01952 1.03220 0.95722 1.96224 0.96157 1.90096 1.58589 1.96348 1.86961 0.96388 1.55267 1.18477 0.89713 0.87727 0.98814 1.66557 1.03682 1.30913 1.20973 0.88159 0.74902 0.82382 0.84307 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.74 18.54 41.84 0.78 -10.97 16 2 C 0.32 6.86 13.92 -22.48 -0.31 6.55 16 3 C -0.30 -6.14 5.87 -105.12 -0.62 -6.76 16 4 C 0.31 6.63 14.81 -22.47 -0.33 6.30 16 5 N -0.53 -12.15 18.54 41.85 0.78 -11.37 16 6 C 0.37 6.98 4.91 -83.54 -0.41 6.57 16 7 C -0.37 -6.73 7.07 -37.75 -0.27 -7.00 16 8 H 0.12 2.06 7.06 -52.49 -0.37 1.69 16 9 C 0.07 1.12 4.85 -17.04 -0.08 1.04 16 10 N -0.70 -12.68 10.69 55.65 0.59 -12.08 16 11 Si 0.92 13.25 29.58 -169.99 -5.03 8.22 16 12 H -0.26 -3.81 7.11 56.52 0.40 -3.41 16 13 H -0.27 -3.86 7.11 56.52 0.40 -3.46 16 14 H -0.25 -3.48 7.11 56.52 0.40 -3.08 16 15 N -0.63 -11.77 3.31 -9.69 -0.03 -11.80 16 16 C 0.47 8.38 5.94 -154.92 -0.92 7.46 16 17 C -0.18 -2.73 8.58 -39.18 -0.34 -3.06 16 18 C -0.04 -0.46 10.18 -39.24 -0.40 -0.86 16 19 C -0.03 -0.42 7.29 -83.88 -0.61 -1.03 16 20 N -0.54 -4.21 6.07 -10.61 -0.06 -4.27 16 21 H 0.43 1.36 8.96 -40.82 -0.37 0.99 16 22 C 0.18 1.66 11.54 -16.79 -0.19 1.47 16 23 C -0.10 -1.44 7.38 -78.03 -0.58 -2.02 16 24 N 0.03 0.53 4.98 34.89 0.17 0.71 16 25 O -0.24 -4.12 19.77 -31.57 -0.62 -4.74 16 26 O -0.15 -3.24 19.84 -31.57 -0.63 -3.87 16 27 C 0.19 3.13 7.34 -83.11 -0.61 2.52 16 28 N -0.50 -9.59 10.45 -9.00 -0.09 -9.68 16 29 H 0.31 5.19 8.28 -40.82 -0.34 4.85 16 30 H 0.41 7.98 8.94 -40.82 -0.37 7.62 16 31 H 0.16 2.34 6.22 -52.49 -0.33 2.01 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -29.02 328.35 -6.28 -35.29 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -1.41 Total: 8.46 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: -5.67 Total: 11.16 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 2.13 Total: -59.47 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -1.25 Total: -8.61 kcal Atomic # 14 Polarization: 13.25 SS G_CDS: -5.03 Total: 8.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.02 -6.28 -35.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.212 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds