Wall clock time and date at job start Tue Mar 31 2020 13:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.43196 * 120.00251 * 69.57375 * 3 2 1 5 5 N 3.51035 * 140.68841 * 69.57198 * 2 1 3 6 6 C 1.40716 * 120.00004 * 249.29560 * 3 2 1 7 7 C 1.39462 * 119.99711 * 354.51234 * 6 3 2 8 8 H 1.07997 * 119.99637 * 342.28822 * 7 6 3 9 9 C 1.41840 * 119.99755 * 162.28799 * 7 6 3 10 10 N 1.29794 * 120.00014 * 352.41197 * 9 7 6 11 11 Si 1.86794 * 119.99963 * 172.41109 * 9 7 6 12 12 H 1.48506 * 109.47235 * 90.00018 * 11 9 7 13 13 H 1.48497 * 109.47251 * 209.99925 * 11 9 7 14 14 H 1.48501 * 109.47160 * 330.00143 * 11 9 7 15 15 N 1.38328 * 120.00260 * 174.51195 * 6 3 2 16 16 C 1.39274 * 119.99936 * 117.89598 * 15 6 3 17 17 C 1.39503 * 119.45448 * 353.58841 * 16 15 6 18 18 C 1.38036 * 119.61404 * 179.74142 * 17 16 15 19 19 C 1.39365 * 118.40150 * 0.53621 * 18 17 16 20 20 N 1.37786 * 133.58266 * 179.73672 * 19 18 17 21 21 H 0.96996 * 125.11334 * 359.95309 * 20 19 18 22 22 C 1.36599 * 109.78134 * 179.97438 * 20 19 18 23 23 C 1.34390 * 109.91541 * 359.97438 * 22 20 19 24 24 N 1.48020 * 126.44905 * 180.02562 * 23 22 20 25 25 O 1.31705 * 120.00092 * 359.97438 * 24 23 22 26 26 O 1.31697 * 120.00232 * 179.97438 * 24 23 22 27 27 C 1.40600 * 119.08604 * 359.70921 * 19 18 17 28 28 N 1.32041 * 119.45214 * 173.85291 * 16 15 6 29 29 H 0.96998 * 119.99688 * 185.04574 * 10 9 7 30 30 H 0.97002 * 120.00108 * 297.90494 * 15 6 3 31 31 H 1.08001 * 120.19310 * 0.02562 * 17 16 15 32 32 H 1.07995 * 120.80242 * 180.24521 * 18 17 16 33 33 H 1.07995 * 125.03757 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2842 -0.4318 -1.1621 5 7 3.8520 -0.7762 -2.0841 6 6 3.2714 0.4318 1.1399 7 6 2.5785 0.9655 2.2262 8 1 1.5640 1.3140 2.1012 9 6 3.2064 1.0507 3.4952 10 7 4.3669 0.5007 3.6834 11 14 2.3632 1.9546 4.8957 12 1 1.5127 1.0046 5.6570 13 1 3.3890 2.5342 5.7995 14 1 1.5175 3.0434 4.3440 15 7 4.6499 0.3262 1.1831 16 6 5.4328 1.4722 1.2997 17 6 4.8260 2.7268 1.2368 18 6 5.5980 3.8647 1.3574 19 6 6.9733 3.7177 1.5283 20 7 8.0133 4.6098 1.6731 21 1 7.9235 5.5756 1.6762 22 6 9.1899 3.9298 1.8113 23 6 8.9621 2.6062 1.7630 24 7 9.9769 1.5346 1.8755 25 8 11.2463 1.8444 2.0400 26 8 9.6104 0.2712 1.8110 27 6 7.5214 2.4238 1.5778 28 7 6.7377 1.3533 1.4626 29 1 4.7632 0.4952 4.5687 30 1 5.0714 -0.5459 1.1320 31 1 3.7578 2.8072 1.0993 32 1 5.1478 4.8455 1.3155 33 1 10.1593 4.3879 1.9402 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158212975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:06 Heat of formation + Delta-G solvation = 143.167920 kcal Electronic energy + Delta-G solvation = -25808.884604 eV Core-core repulsion = 21839.374809 eV Total energy + Delta-G solvation = -3969.509796 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.93844 -40.33967 -39.39548 -38.19322 -36.85187 -36.52505 -35.19788 -34.99967 -33.96186 -32.40327 -31.47910 -29.42023 -28.78849 -27.35521 -24.65495 -24.20989 -22.70798 -21.89477 -20.71149 -19.67561 -19.11617 -18.84689 -18.51598 -17.95567 -17.63914 -17.41161 -17.05494 -16.61447 -15.84959 -15.71042 -15.17185 -14.73870 -14.47461 -14.39191 -14.06567 -13.99568 -13.96964 -13.88540 -13.42292 -13.40903 -13.21718 -13.10682 -12.70046 -12.64397 -12.33533 -12.04952 -12.00964 -11.68983 -11.59709 -11.53583 -11.15173 -10.38236 -9.82131 -9.72454 -9.20267 -8.36318 -7.17668 -1.43128 -0.02839 0.28830 0.29376 0.78988 1.20343 1.37452 1.52004 1.56411 1.71877 2.03406 2.07178 2.19827 2.24366 2.54611 2.63774 2.94320 3.04692 3.38463 3.40998 3.71021 3.81512 3.99444 4.07097 4.13452 4.48746 4.59416 4.62610 4.65639 4.88021 5.07492 5.14288 5.36092 5.44997 5.70214 5.86417 6.02130 6.10690 6.20791 6.56515 6.69409 7.16432 7.32591 7.39574 7.68824 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.004651 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.665293 B = 6019.151575 C = 7000.789200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.332 3.668 3 C -0.318 4.318 4 C 0.315 3.685 5 N -0.563 5.563 6 C 0.369 3.631 7 C -0.360 4.360 8 H 0.119 0.881 9 C 0.044 3.956 10 N -0.718 5.718 11 Si 0.979 3.021 12 H -0.263 1.263 13 H -0.264 1.264 14 H -0.235 1.235 15 N -0.641 5.641 16 C 0.447 3.553 17 C -0.204 4.204 18 C -0.010 4.010 19 C -0.025 4.025 20 N -0.500 5.500 21 H 0.462 0.538 22 C 0.248 3.752 23 C -0.145 4.145 24 N 0.043 4.957 25 O -0.206 6.206 26 O -0.282 6.282 27 C 0.149 3.851 28 N -0.547 5.547 29 H 0.310 0.690 30 H 0.400 0.600 31 H 0.159 0.841 32 H 0.193 0.807 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 19.552 7.817 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C 0.025 3.975 3 C -0.337 4.337 4 C 0.009 3.991 5 N -0.246 5.246 6 C 0.265 3.735 7 C -0.386 4.386 8 H 0.137 0.863 9 C -0.188 4.188 10 N -0.335 5.335 11 Si 0.797 3.203 12 H -0.187 1.187 13 H -0.188 1.188 14 H -0.157 1.157 15 N -0.264 5.264 16 C 0.206 3.794 17 C -0.229 4.229 18 C -0.037 4.037 19 C -0.133 4.133 20 N -0.107 5.107 21 H 0.309 0.691 22 C 0.101 3.899 23 C -0.248 4.248 24 N 0.497 4.503 25 O -0.393 6.393 26 O -0.447 6.447 27 C 0.013 3.987 28 N -0.266 5.266 29 H 0.122 0.878 30 H 0.237 0.763 31 H 0.177 0.823 32 H 0.210 0.790 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 5.917 18.595 6.479 20.561 hybrid contribution 0.220 -0.370 0.815 0.922 sum 6.137 18.225 7.294 20.567 Atomic orbital electron populations 1.81070 1.12573 1.19288 1.10539 1.24714 0.91277 0.90114 0.91361 1.12818 0.82665 1.44336 0.93930 1.25425 0.91978 0.90086 0.91605 1.81086 1.10478 1.19874 1.13165 1.16696 0.79854 0.87787 0.89142 1.20956 1.00588 1.25805 0.91299 0.86340 1.27321 0.94343 0.94178 1.02927 1.69363 1.13077 1.23740 1.27340 0.85139 0.79231 0.79764 0.76129 1.18735 1.18803 1.15707 1.41323 1.03378 1.06544 1.75170 1.18091 0.86158 0.87048 0.88096 1.21820 1.02942 0.90603 1.07563 1.20720 0.87770 1.00748 0.94429 1.18631 0.91814 0.88164 1.14669 1.41591 1.02721 1.10334 1.56017 0.69104 1.22508 0.93477 0.87126 0.86780 1.20488 0.85348 0.87568 1.31436 1.49586 1.02294 1.03605 0.94786 1.96148 0.97210 1.89802 1.56151 1.96376 1.87166 0.98044 1.63079 1.19086 0.90765 0.89113 0.99705 1.66423 1.04632 1.33477 1.22075 0.87777 0.76348 0.82321 0.78985 0.72213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.67 18.54 19.00 0.35 -24.31 16 2 C 0.33 14.30 13.92 88.33 1.23 15.53 16 3 C -0.32 -13.31 5.87 -20.18 -0.12 -13.43 16 4 C 0.32 14.32 14.81 88.33 1.31 15.62 16 5 N -0.56 -27.30 18.54 19.01 0.35 -26.95 16 6 C 0.37 14.30 4.91 39.02 0.19 14.49 16 7 C -0.36 -12.80 7.07 23.46 0.17 -12.63 16 8 H 0.12 4.13 7.06 -2.91 -0.02 4.11 16 9 C 0.04 1.47 4.85 85.89 0.42 1.88 16 10 N -0.72 -26.04 10.69 22.16 0.24 -25.81 16 11 Si 0.98 25.24 29.58 68.60 2.03 27.27 16 12 H -0.26 -7.14 7.11 99.48 0.71 -6.43 16 13 H -0.26 -6.65 7.11 99.48 0.71 -5.94 16 14 H -0.23 -5.64 7.11 99.48 0.71 -4.93 16 15 N -0.64 -25.32 3.31 -184.56 -0.61 -25.94 16 16 C 0.45 16.49 5.94 133.17 0.79 17.28 16 17 C -0.20 -5.94 8.58 22.53 0.19 -5.74 16 18 C -0.01 -0.20 10.18 22.49 0.23 0.03 16 19 C -0.03 -0.52 7.29 39.06 0.28 -0.24 16 20 N -0.50 -4.35 6.07 -187.48 -1.14 -5.49 16 21 H 0.46 -1.06 8.96 -92.71 -0.83 -1.89 16 22 C 0.25 3.06 11.54 83.07 0.96 4.02 16 23 C -0.14 -4.10 7.38 37.62 0.28 -3.82 16 24 N 0.04 1.61 4.98 -43.53 -0.22 1.39 16 25 O -0.21 -6.93 19.77 3.51 0.07 -6.86 16 26 O -0.28 -13.18 19.84 3.52 0.07 -13.11 16 27 C 0.15 4.82 7.34 41.64 0.31 5.13 16 28 N -0.55 -21.81 10.45 -182.40 -1.91 -23.72 16 29 H 0.31 10.53 8.28 -92.71 -0.77 9.76 16 30 H 0.40 17.01 8.94 -92.71 -0.83 16.18 16 31 H 0.16 4.50 6.22 -2.91 -0.02 4.48 16 32 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.26 0.26 8.06 -2.91 -0.02 0.24 16 Total: -1.00 -73.22 328.35 5.08 -68.14 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.39 Total: 17.25 kcal Atomic # 6 Polarization: 31.90 SS G_CDS: 6.23 Total: 38.13 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -2.93 Total: -130.82 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: 0.14 Total: -19.98 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: 2.03 Total: 27.27 kcal Total: -73.22 5.08 -68.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158212975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.310 kcal (2) G-P(sol) polarization free energy of solvation -73.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds