Wall clock time and date at job start Tue Mar 31 2020 13:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.43193 * 119.99955 * 226.86467 * 3 2 1 5 5 N 3.51035 * 140.68927 * 226.86602 * 2 1 3 6 6 C 1.40709 * 119.99711 * 46.86722 * 3 2 1 7 7 C 1.39452 * 120.00429 * 5.35743 * 6 3 2 8 8 H 1.07993 * 119.99986 * 339.77560 * 7 6 3 9 9 C 1.46112 * 119.99851 * 159.77934 * 7 6 3 10 10 N 1.29784 * 120.00318 * 350.98860 * 9 7 6 11 11 Si 1.86808 * 119.99728 * 170.99324 * 9 7 6 12 12 H 1.48506 * 109.46928 * 89.99621 * 11 9 7 13 13 H 1.48490 * 109.47044 * 209.99771 * 11 9 7 14 14 H 1.48497 * 109.46885 * 329.99986 * 11 9 7 15 15 N 1.38336 * 119.99702 * 185.35875 * 6 3 2 16 16 C 1.39146 * 120.00315 * 119.78063 * 15 6 3 17 17 C 1.39500 * 119.29591 * 353.71881 * 16 15 6 18 18 C 1.36926 * 119.49452 * 179.72177 * 17 16 15 19 19 N 1.48019 * 120.87047 * 179.97438 * 18 17 16 20 20 O 1.31696 * 120.00027 * 3.57594 * 19 18 17 21 21 O 1.31707 * 119.99579 * 183.58207 * 19 18 17 22 22 C 1.39876 * 118.25656 * 0.02562 * 18 17 16 23 23 C 1.46440 * 134.18821 * 179.97438 * 22 18 17 24 24 C 1.34215 * 106.86509 * 179.97438 * 23 22 18 25 25 N 1.37030 * 109.87345 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.00005 * 180.02562 * 25 24 23 27 27 C 1.37378 * 110.00296 * 359.97438 * 25 24 23 28 28 N 1.32138 * 119.30296 * 173.45690 * 16 15 6 29 29 H 0.97005 * 119.99919 * 185.05196 * 10 9 7 30 30 H 0.97008 * 119.99981 * 299.77475 * 15 6 3 31 31 H 1.07994 * 120.25230 * 359.74953 * 17 16 15 32 32 H 1.07998 * 126.56760 * 359.97438 * 23 22 18 33 33 H 1.08003 * 125.06147 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2835 0.8488 0.9049 5 7 3.8520 1.5205 1.6229 6 6 3.2718 -0.8322 -0.8893 7 6 2.5795 -1.5741 -1.8458 8 1 1.5269 -1.7764 -1.7142 9 6 3.2783 -2.0778 -3.0260 10 7 4.4923 -1.6923 -3.2752 11 14 2.4243 -3.2766 -4.1764 12 1 1.7032 -2.5211 -5.2321 13 1 3.4350 -4.1641 -4.8055 14 1 1.4559 -4.0973 -3.4058 15 7 4.6507 -0.9150 -0.8147 16 6 5.2613 -2.1384 -0.5563 17 6 4.4698 -3.2440 -0.2445 18 6 5.0661 -4.4511 0.0049 19 7 4.2557 -5.6438 0.3391 20 8 2.9409 -5.5700 0.3308 21 8 4.8497 -6.7789 0.6449 22 6 6.4611 -4.5273 -0.0634 23 6 7.4354 -5.6030 0.1318 24 6 8.6502 -5.0696 -0.0708 25 7 8.5296 -3.7399 -0.3791 26 1 9.2706 -3.1430 -0.5675 27 6 7.2047 -3.3767 -0.3832 28 7 6.5782 -2.2294 -0.6166 29 1 4.9300 -1.9682 -4.0957 30 1 5.1920 -0.1202 -0.9426 31 1 3.3950 -3.1486 -0.2006 32 1 7.2180 -6.6290 0.3895 33 1 9.5837 -5.6082 -0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158213332.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:39 Heat of formation + Delta-G solvation = 153.834819 kcal Electronic energy + Delta-G solvation = -26272.044853 eV Core-core repulsion = 22302.997608 eV Total energy + Delta-G solvation = -3969.047244 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.87496 -40.42010 -39.95069 -38.17224 -36.82242 -36.56082 -35.58186 -35.16902 -34.42898 -32.22836 -31.26624 -29.35059 -28.77902 -28.06692 -24.35150 -24.10288 -22.75512 -21.87651 -20.93329 -20.05460 -19.63031 -19.00190 -18.86240 -17.84866 -17.60938 -17.25851 -16.81125 -16.76683 -16.14111 -15.85462 -15.27742 -14.95768 -14.64379 -14.43315 -14.21373 -14.00914 -13.97578 -13.54328 -13.44878 -13.40213 -13.28623 -13.12472 -12.75389 -12.71589 -12.52549 -12.37826 -12.21378 -12.06200 -11.88716 -11.60775 -11.06434 -10.93351 -9.93483 -9.58814 -9.33593 -8.44812 -7.21445 -1.91745 -0.07908 -0.04536 0.06510 0.61201 1.27036 1.34325 1.40989 1.52614 1.66457 1.97494 2.03325 2.20425 2.21856 2.43252 2.52733 2.58316 3.31929 3.35681 3.37856 3.54015 3.78294 3.81325 4.02863 4.20830 4.42121 4.43360 4.52230 4.60168 4.77801 5.04101 5.27460 5.34829 5.46069 5.63124 5.70821 5.83956 5.91998 6.15965 6.44763 6.61786 6.98058 7.15841 7.32134 7.50394 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010514 B = 0.005625 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.601210 B = 4976.880509 C = 5583.487284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C 0.329 3.671 3 C -0.320 4.320 4 C 0.316 3.684 5 N -0.554 5.554 6 C 0.358 3.642 7 C -0.365 4.365 8 H 0.115 0.885 9 C 0.046 3.954 10 N -0.702 5.702 11 Si 0.962 3.038 12 H -0.242 1.242 13 H -0.259 1.259 14 H -0.253 1.253 15 N -0.625 5.625 16 C 0.470 3.530 17 C -0.163 4.163 18 C 0.093 3.907 19 N -0.016 5.016 20 O -0.221 6.221 21 O -0.131 6.131 22 C -0.184 4.184 23 C -0.206 4.206 24 C 0.106 3.894 25 N -0.561 5.561 26 H 0.441 0.559 27 C 0.328 3.672 28 N -0.518 5.518 29 H 0.318 0.682 30 H 0.413 0.587 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.115 -10.327 -5.201 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C 0.022 3.978 3 C -0.339 4.339 4 C 0.010 3.990 5 N -0.237 5.237 6 C 0.255 3.745 7 C -0.391 4.391 8 H 0.133 0.867 9 C -0.189 4.189 10 N -0.319 5.319 11 Si 0.781 3.219 12 H -0.165 1.165 13 H -0.183 1.183 14 H -0.176 1.176 15 N -0.250 5.250 16 C 0.225 3.775 17 C -0.189 4.189 18 C 0.000 4.000 19 N 0.463 4.537 20 O -0.400 6.400 21 O -0.338 6.338 22 C -0.194 4.194 23 C -0.231 4.231 24 C -0.020 4.020 25 N -0.170 5.170 26 H 0.283 0.717 27 C 0.090 3.910 28 N -0.243 5.243 29 H 0.132 0.868 30 H 0.252 0.748 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 15.225 -7.989 -4.578 17.793 hybrid contribution -0.738 -0.738 -0.567 1.188 sum 14.487 -8.727 -5.145 17.678 Atomic orbital electron populations 1.81068 1.12710 1.15359 1.14330 1.24782 0.91414 0.90785 0.90849 1.12682 0.82616 1.21536 1.17090 1.25224 0.92130 0.90899 0.90744 1.81056 1.10403 1.16683 1.15601 1.16581 0.79613 0.89772 0.88532 1.21829 0.98263 1.20718 0.98302 0.86729 1.28208 0.94722 0.96227 0.99727 1.69126 1.10886 1.28332 1.23539 0.85352 0.80024 0.78143 0.78408 1.16498 1.18288 1.17626 1.40970 1.04476 1.06758 1.72845 1.16968 0.85474 0.85397 0.89635 1.21200 1.03862 0.90469 1.03411 1.19508 0.89009 0.83716 1.07776 1.50527 1.03208 1.03536 0.96471 1.96320 0.89397 1.93226 1.61085 1.96147 1.73686 1.14586 1.49419 1.19564 0.89855 0.99171 1.10852 1.22059 0.89919 0.99198 1.11906 1.22860 1.00935 0.81064 0.97130 1.41677 1.03370 1.11246 1.60743 0.71730 1.17787 0.87137 0.87353 0.98744 1.65766 1.08662 1.26700 1.23163 0.86797 0.74812 0.82080 0.81163 0.74072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -25.94 18.54 19.00 0.35 -25.58 16 2 C 0.33 14.77 13.89 88.33 1.23 16.00 16 3 C -0.32 -13.58 5.87 -20.19 -0.12 -13.70 16 4 C 0.32 13.94 14.79 88.33 1.31 15.25 16 5 N -0.55 -25.53 18.54 19.00 0.35 -25.17 16 6 C 0.36 14.06 4.97 39.01 0.19 14.26 16 7 C -0.36 -14.01 7.10 24.61 0.17 -13.84 16 8 H 0.11 4.55 7.07 -2.91 -0.02 4.53 16 9 C 0.05 1.61 4.92 87.04 0.43 2.04 16 10 N -0.70 -23.87 11.10 23.13 0.26 -23.61 16 11 Si 0.96 28.51 29.65 68.60 2.03 30.55 16 12 H -0.24 -6.80 7.11 99.48 0.71 -6.10 16 13 H -0.26 -7.39 7.11 99.48 0.71 -6.69 16 14 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 15 N -0.63 -22.84 3.40 -184.60 -0.63 -23.46 16 16 C 0.47 16.77 6.10 133.18 0.81 17.58 16 17 C -0.16 -6.05 8.04 22.27 0.18 -5.87 16 18 C 0.09 3.30 6.92 36.46 0.25 3.55 16 19 N -0.02 -0.61 4.98 -46.25 -0.23 -0.84 16 20 O -0.22 -9.04 19.24 3.52 0.07 -8.97 16 21 O -0.13 -4.48 17.91 3.50 0.06 -4.42 16 22 C -0.18 -5.45 6.16 -20.15 -0.12 -5.58 16 23 C -0.21 -4.28 10.27 23.49 0.24 -4.04 16 24 C 0.11 1.27 11.82 82.96 0.98 2.25 16 25 N -0.56 -9.14 6.06 -192.29 -1.16 -10.30 16 26 H 0.44 4.38 8.96 -92.71 -0.83 3.55 16 27 C 0.33 9.05 8.42 133.87 1.13 10.18 16 28 N -0.52 -16.77 10.43 -190.08 -1.98 -18.75 16 29 H 0.32 9.66 8.28 -92.70 -0.77 8.89 16 30 H 0.41 14.72 8.91 -92.70 -0.83 13.89 16 31 H 0.16 6.41 5.71 -2.91 -0.02 6.39 16 32 H 0.17 3.24 7.08 -2.91 -0.02 3.22 16 33 H 0.24 0.02 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -57.62 324.50 5.42 -52.20 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -0.39 Total: 20.29 kcal Atomic # 6 Polarization: 31.39 SS G_CDS: 6.68 Total: 38.07 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -3.04 Total: -127.72 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.13 Total: -13.39 kcal Atomic # 14 Polarization: 28.51 SS G_CDS: 2.03 Total: 30.55 kcal Total: -57.62 5.42 -52.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213332.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.040 kcal (2) G-P(sol) polarization free energy of solvation -57.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds