Wall clock time and date at job start Tue Mar 31 2020 14:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 120.00365 * 2 1 4 4 H 1.48499 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47000 * 300.00105 * 3 2 1 6 6 H 1.48505 * 109.46697 * 60.00179 * 3 2 1 7 7 C 1.38824 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36908 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.38869 * 119.99873 * 180.02562 * 9 7 2 11 11 C 1.38986 * 119.65391 * 359.73124 * 10 9 7 12 12 C 1.39483 * 118.94519 * 180.29566 * 11 10 9 13 13 C 1.48320 * 120.87014 * 179.97438 * 12 11 10 14 14 C 1.39406 * 120.05929 * 359.70637 * 13 12 11 15 15 C 1.37886 * 119.92856 * 179.74475 * 14 13 12 16 16 C 1.38850 * 120.06840 * 0.55279 * 15 14 13 17 17 O 1.35854 * 119.93572 * 179.72381 * 16 15 14 18 18 C 1.42893 * 117.00020 * 359.97420 * 17 16 15 19 19 F 1.39903 * 109.47188 * 59.99801 * 18 17 16 20 20 F 1.39902 * 109.47326 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.47206 * 300.00322 * 18 17 16 22 22 C 1.38855 * 120.12902 * 359.69338 * 16 15 14 23 23 C 1.37877 * 120.07006 * 0.03001 * 22 16 15 24 24 C 1.40009 * 118.26844 * 359.97438 * 12 11 10 25 25 C 1.37871 * 119.19944 * 359.97438 * 24 12 11 26 26 N 1.31956 * 120.98950 * 0.02562 * 25 24 12 27 27 H 0.97001 * 119.99798 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00117 * 0.02562 * 9 7 2 29 29 H 1.08006 * 120.52960 * 0.25219 * 11 10 9 30 30 H 1.07998 * 120.04025 * 0.02562 * 14 13 12 31 31 H 1.08007 * 119.96559 * 180.27325 * 15 14 13 32 32 H 1.07999 * 119.96557 * 180.02562 * 22 16 15 33 33 H 1.07993 * 120.03780 * 180.02562 * 23 22 16 34 34 H 1.08007 * 120.40143 * 179.97438 * 24 12 11 35 35 H 1.07995 * 119.50529 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2126 7 6 2.0097 -1.2023 -0.0005 8 1 3.0896 -1.2024 -0.0001 9 7 1.3250 -2.3879 -0.0005 10 6 2.0193 -3.5906 -0.0005 11 6 3.4091 -3.5823 -0.0062 12 6 4.0914 -4.7988 -0.0124 13 6 5.5741 -4.8398 -0.0192 14 6 6.3054 -3.6529 -0.0256 15 6 7.6836 -3.6942 -0.0265 16 6 8.3431 -4.9160 -0.0327 17 8 9.7011 -4.9535 -0.0393 18 6 10.3846 -3.6986 -0.0400 19 9 10.0340 -2.9759 1.1054 20 9 11.7660 -3.9200 -0.0477 21 9 10.0231 -2.9713 -1.1791 22 6 7.6173 -6.0998 -0.0315 23 6 6.2389 -6.0650 -0.0248 24 6 3.3403 -5.9804 -0.0121 25 6 1.9638 -5.9023 -0.0052 26 7 1.3496 -4.7345 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 0.3550 -2.3878 -0.0005 29 1 3.9522 -2.6487 -0.0065 30 1 5.7931 -2.7022 -0.0252 31 1 8.2508 -2.7750 -0.0270 32 1 8.1329 -7.0487 -0.0360 33 1 5.6750 -6.9860 -0.0235 34 1 3.8332 -6.9414 -0.0172 35 1 1.3796 -6.8106 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163181865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:09 Heat of formation + Delta-G solvation = -127.847409 kcal Electronic energy + Delta-G solvation = -26013.802142 eV Core-core repulsion = 21561.931091 eV Total energy + Delta-G solvation = -4451.871050 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.65608 -48.39308 -48.23576 -40.40253 -39.22314 -37.66719 -35.33072 -32.72915 -31.96917 -31.26622 -28.96103 -28.49672 -26.15485 -25.10509 -23.61633 -23.10033 -21.54759 -20.89526 -19.79829 -19.36014 -19.12844 -17.89212 -17.38386 -16.74369 -15.58757 -15.48436 -15.42505 -15.26183 -15.00579 -14.77728 -14.70868 -14.63573 -14.49444 -14.35232 -14.12887 -13.68188 -13.54606 -13.52972 -13.39036 -13.16446 -12.89336 -12.32891 -11.91615 -11.60589 -11.41005 -11.40810 -10.77799 -10.49628 -10.47733 -10.26430 -9.59228 -9.16295 -8.85503 -8.45492 -7.88680 -7.08024 -6.70442 -3.91882 0.82929 1.23359 1.28818 2.30175 2.43619 2.64082 3.07295 3.09247 3.12942 3.56247 3.64977 3.85173 3.90867 4.54375 4.63860 4.66580 4.76144 4.95719 4.99915 5.19676 5.24714 5.35505 5.55756 5.82390 5.90674 5.99973 6.07618 6.22918 6.31524 6.37502 6.51956 6.70205 6.80208 6.98037 7.08159 7.27845 7.47511 7.79381 8.52365 8.87414 9.22358 9.60616 10.45856 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.003460 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.457847 B = 8091.710414 C =10221.671161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.304 4.304 8 H 0.104 0.896 9 N -0.530 5.530 10 C 0.364 3.636 11 C -0.239 4.239 12 C 0.027 3.973 13 C -0.041 4.041 14 C -0.067 4.067 15 C -0.187 4.187 16 C 0.090 3.910 17 O -0.312 6.312 18 C 0.603 3.397 19 F -0.165 7.165 20 F -0.135 7.135 21 F -0.165 7.165 22 C -0.123 4.123 23 C -0.073 4.073 24 C -0.298 4.298 25 C 0.163 3.837 26 N -0.577 5.577 27 H 0.277 0.723 28 H 0.405 0.595 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.112 0.888 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.508 -8.226 -0.078 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.180 4.180 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.136 5.136 10 C 0.121 3.879 11 C -0.267 4.267 12 C 0.020 3.980 13 C -0.041 4.041 14 C -0.085 4.085 15 C -0.206 4.206 16 C 0.049 3.951 17 O -0.232 6.232 18 C 0.512 3.488 19 F -0.147 7.147 20 F -0.117 7.117 21 F -0.147 7.147 22 C -0.142 4.142 23 C -0.091 4.091 24 C -0.325 4.325 25 C 0.000 4.000 26 N -0.298 5.298 27 H 0.087 0.913 28 H 0.240 0.760 29 H 0.143 0.857 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.160 0.840 34 H 0.130 0.870 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 16.593 -7.739 -0.075 18.309 hybrid contribution 1.062 1.186 -0.001 1.592 sum 17.655 -6.552 -0.075 18.832 Atomic orbital electron populations 1.69704 1.06083 1.28793 1.47115 1.25355 0.95770 1.00032 0.96842 0.85728 0.79412 0.80636 0.78196 1.19033 1.20336 1.20331 1.19762 0.92997 0.82193 1.48460 0.87833 1.40844 1.08800 1.01085 1.62874 1.18176 0.88273 0.86182 0.95294 1.21175 0.93644 0.97318 1.14540 1.18524 0.89832 0.93586 0.96025 1.18992 0.92968 0.92732 0.99392 1.21205 0.92249 0.99141 0.95943 1.21431 0.96430 0.95951 1.06773 1.18756 0.77950 0.95683 1.02758 1.86368 1.20239 1.27229 1.89375 1.19361 0.76969 0.77632 0.74813 1.93311 1.91768 1.78393 1.51212 1.93294 1.27428 1.94602 1.96337 1.93311 1.91499 1.78166 1.51716 1.20296 0.93263 0.95733 1.04862 1.21146 0.92362 0.98313 0.97314 1.21174 0.94915 0.96760 1.19663 1.21896 0.91507 0.94119 0.92490 1.67057 1.40722 0.97469 1.24572 0.91264 0.75966 0.85676 0.84243 0.84995 0.84504 0.83983 0.86990 0.84584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.12 13.05 55.49 0.72 -22.39 16 2 C 0.03 0.63 5.50 -17.45 -0.10 0.53 16 3 Si 0.93 19.16 29.55 -169.99 -5.02 14.13 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.30 -7.59 9.54 -15.07 -0.14 -7.74 16 8 H 0.10 2.44 5.65 -52.49 -0.30 2.14 16 9 N -0.53 -13.26 5.44 -11.19 -0.06 -13.32 16 10 C 0.36 8.43 7.61 -155.07 -1.18 7.25 16 11 C -0.24 -4.98 8.72 -38.84 -0.34 -5.32 16 12 C 0.03 0.49 5.91 -104.62 -0.62 -0.12 16 13 C -0.04 -0.62 5.88 -104.88 -0.62 -1.23 16 14 C -0.07 -0.98 9.44 -39.28 -0.37 -1.35 16 15 C -0.19 -2.46 8.24 -39.48 -0.33 -2.79 16 16 C 0.09 1.13 6.49 -39.13 -0.25 0.87 16 17 O -0.31 -3.61 10.37 -19.28 -0.20 -3.81 16 18 C 0.60 6.35 3.42 101.05 0.35 6.70 16 19 F -0.16 -1.79 15.55 2.25 0.04 -1.75 16 20 F -0.14 -1.31 17.53 2.25 0.04 -1.27 16 21 F -0.16 -1.79 15.55 2.25 0.04 -1.75 16 22 C -0.12 -1.41 9.97 -39.49 -0.39 -1.80 16 23 C -0.07 -0.91 9.44 -39.28 -0.37 -1.28 16 24 C -0.30 -5.02 9.50 -39.05 -0.37 -5.39 16 25 C 0.16 2.97 11.16 -17.63 -0.20 2.77 16 26 N -0.58 -12.70 10.38 -12.52 -0.13 -12.83 16 27 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.40 10.55 8.01 -40.82 -0.33 10.22 16 29 H 0.13 2.53 4.21 -52.48 -0.22 2.31 16 30 H 0.14 2.03 6.29 -52.49 -0.33 1.70 16 31 H 0.13 1.58 5.08 -52.48 -0.27 1.32 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.48 6.28 -52.49 -0.33 1.15 16 34 H 0.11 1.51 6.33 -52.48 -0.33 1.18 16 35 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 315.84 15.07 4.76 4.76 Total: -1.00 -26.88 315.84 -6.83 -33.72 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -2.08 Total: 13.42 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -4.93 Total: -8.90 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.53 Total: -48.54 kcal Atomic # 8 Polarization: -3.61 SS G_CDS: -0.20 Total: -3.81 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.11 Total: -4.78 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.88 -6.83 -33.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.131 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds