Wall clock time and date at job start Tue Mar 31 2020 14:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86799 * 120.00365 * 2 1 4 4 H 1.48499 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47000 * 300.00105 * 3 2 1 6 6 H 1.48505 * 109.46697 * 60.00179 * 3 2 1 7 7 C 1.38824 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36908 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.38869 * 119.99873 * 180.02562 * 9 7 2 11 11 C 1.38986 * 119.65391 * 359.73124 * 10 9 7 12 12 C 1.39483 * 118.94519 * 180.29566 * 11 10 9 13 13 C 1.48320 * 120.87014 * 179.97438 * 12 11 10 14 14 C 1.39406 * 120.05929 * 359.70637 * 13 12 11 15 15 C 1.37886 * 119.92856 * 179.74475 * 14 13 12 16 16 C 1.38850 * 120.06840 * 0.55279 * 15 14 13 17 17 O 1.35854 * 119.93572 * 179.72381 * 16 15 14 18 18 C 1.42893 * 117.00020 * 359.97420 * 17 16 15 19 19 F 1.39903 * 109.47188 * 59.99801 * 18 17 16 20 20 F 1.39902 * 109.47326 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.47206 * 300.00322 * 18 17 16 22 22 C 1.38855 * 120.12902 * 359.69338 * 16 15 14 23 23 C 1.37877 * 120.07006 * 0.03001 * 22 16 15 24 24 C 1.40009 * 118.26844 * 359.97438 * 12 11 10 25 25 C 1.37871 * 119.19944 * 359.97438 * 24 12 11 26 26 N 1.31956 * 120.98950 * 0.02562 * 25 24 12 27 27 H 0.97001 * 119.99798 * 359.97438 * 1 2 3 28 28 H 0.97003 * 120.00117 * 0.02562 * 9 7 2 29 29 H 1.08006 * 120.52960 * 0.25219 * 11 10 9 30 30 H 1.07998 * 120.04025 * 0.02562 * 14 13 12 31 31 H 1.08007 * 119.96559 * 180.27325 * 15 14 13 32 32 H 1.07999 * 119.96557 * 180.02562 * 22 16 15 33 33 H 1.07993 * 120.03780 * 180.02562 * 23 22 16 34 34 H 1.08007 * 120.40143 * 179.97438 * 24 12 11 35 35 H 1.07995 * 119.50529 * 179.97438 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3462 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2126 7 6 2.0097 -1.2023 -0.0005 8 1 3.0896 -1.2024 -0.0001 9 7 1.3250 -2.3879 -0.0005 10 6 2.0193 -3.5906 -0.0005 11 6 3.4091 -3.5823 -0.0062 12 6 4.0914 -4.7988 -0.0124 13 6 5.5741 -4.8398 -0.0192 14 6 6.3054 -3.6529 -0.0256 15 6 7.6836 -3.6942 -0.0265 16 6 8.3431 -4.9160 -0.0327 17 8 9.7011 -4.9535 -0.0393 18 6 10.3846 -3.6986 -0.0400 19 9 10.0340 -2.9759 1.1054 20 9 11.7660 -3.9200 -0.0477 21 9 10.0231 -2.9713 -1.1791 22 6 7.6173 -6.0998 -0.0315 23 6 6.2389 -6.0650 -0.0248 24 6 3.3403 -5.9804 -0.0121 25 6 1.9638 -5.9023 -0.0052 26 7 1.3496 -4.7345 0.0006 27 1 -0.4850 0.8401 0.0004 28 1 0.3550 -2.3878 -0.0005 29 1 3.9522 -2.6487 -0.0065 30 1 5.7931 -2.7022 -0.0252 31 1 8.2508 -2.7750 -0.0270 32 1 8.1329 -7.0487 -0.0360 33 1 5.6750 -6.9860 -0.0235 34 1 3.8332 -6.9414 -0.0172 35 1 1.3796 -6.8106 -0.0054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181865.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:08 Heat of formation + Delta-G solvation = -142.069167 kcal Electronic energy + Delta-G solvation = -26014.418843 eV Core-core repulsion = 21561.931091 eV Total energy + Delta-G solvation = -4452.487752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.50064 -49.21396 -49.09774 -41.45589 -40.67032 -38.78400 -37.00274 -34.15543 -33.62558 -32.32121 -30.17244 -30.09384 -27.10247 -26.85203 -24.89808 -24.21048 -22.90960 -22.21972 -20.75590 -20.21256 -20.06241 -19.61716 -18.72966 -17.84850 -17.03398 -16.79059 -16.52375 -16.31246 -16.19400 -15.85283 -15.67933 -15.57287 -15.49948 -15.36119 -15.21371 -15.07049 -15.00169 -14.83243 -14.66549 -14.26584 -14.11020 -13.56537 -13.49033 -13.04191 -12.90408 -12.68277 -12.28257 -12.10223 -12.08419 -11.69617 -10.97312 -10.58895 -10.14934 -10.06028 -9.12197 -8.75934 -8.50765 -5.80689 -0.33362 0.23609 0.40322 0.75730 1.06390 1.40631 1.46915 1.54237 1.77295 2.23230 2.57654 2.71331 2.91489 2.99084 3.14956 3.52248 3.55165 3.64321 3.66965 3.99771 4.14223 4.23173 4.35883 4.55884 4.70000 4.75086 4.86614 4.95439 5.09049 5.18058 5.25838 5.32263 5.35905 5.41630 5.73431 5.82838 5.88658 6.21843 6.71896 7.17366 7.44619 7.87600 8.68585 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.003460 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.457847 B = 8091.710414 C =10221.671161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.027 4.027 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.317 4.317 8 H 0.108 0.892 9 N -0.566 5.566 10 C 0.353 3.647 11 C -0.267 4.267 12 C 0.035 3.965 13 C -0.069 4.069 14 C -0.078 4.078 15 C -0.194 4.194 16 C 0.094 3.906 17 O -0.310 6.310 18 C 0.606 3.394 19 F -0.167 7.167 20 F -0.128 7.128 21 F -0.167 7.167 22 C -0.115 4.115 23 C -0.059 4.059 24 C -0.272 4.272 25 C 0.149 3.851 26 N -0.604 5.604 27 H 0.276 0.724 28 H 0.390 0.610 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.138 0.862 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.560 -11.148 -0.092 23.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.226 4.226 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.447 4.447 8 H 0.125 0.875 9 N -0.175 5.175 10 C 0.113 3.887 11 C -0.294 4.294 12 C 0.028 3.972 13 C -0.069 4.069 14 C -0.096 4.096 15 C -0.213 4.213 16 C 0.051 3.949 17 O -0.230 6.230 18 C 0.516 3.484 19 F -0.149 7.149 20 F -0.109 7.109 21 F -0.149 7.149 22 C -0.133 4.133 23 C -0.076 4.076 24 C -0.297 4.297 25 C -0.011 4.011 26 N -0.326 5.326 27 H 0.085 0.915 28 H 0.224 0.776 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.156 0.844 32 H 0.189 0.811 33 H 0.189 0.811 34 H 0.178 0.822 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 19.708 -10.741 -0.089 22.445 hybrid contribution 0.390 1.660 0.002 1.705 sum 20.099 -9.081 -0.087 22.055 Atomic orbital electron populations 1.69820 1.07530 1.29219 1.50153 1.26223 0.96516 1.02989 0.96910 0.84754 0.78624 0.76483 0.77882 1.17859 1.20277 1.20269 1.20025 0.93270 0.82826 1.48603 0.87463 1.40825 1.07972 1.01771 1.66940 1.18579 0.89251 0.86236 0.94644 1.21257 0.92881 0.98723 1.16546 1.18888 0.91750 0.92858 0.93748 1.18942 0.91315 0.94253 1.02402 1.21184 0.92993 0.98868 0.96539 1.21482 0.95842 0.96896 1.07061 1.18982 0.78424 0.95873 1.01577 1.86374 1.19729 1.27701 1.89175 1.19300 0.77127 0.77347 0.74651 1.93312 1.91821 1.78407 1.51314 1.93315 1.26815 1.94524 1.96291 1.93312 1.91555 1.78180 1.51817 1.20669 0.92888 0.96678 1.03095 1.21413 0.92928 0.97944 0.95358 1.21774 0.94451 0.98317 1.15144 1.22697 0.92939 0.94116 0.91386 1.67090 1.41983 0.98328 1.25206 0.91485 0.77611 0.86283 0.85510 0.84450 0.81075 0.81128 0.82166 0.80622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.74 13.05 21.65 0.28 -51.46 16 2 C -0.03 -1.41 5.50 84.87 0.47 -0.94 16 3 Si 1.00 40.94 29.55 68.60 2.03 42.96 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.32 -16.81 9.54 84.04 0.80 -16.00 16 8 H 0.11 5.35 5.65 -2.91 -0.02 5.34 16 9 N -0.57 -30.11 5.44 -189.32 -1.03 -31.14 16 10 C 0.35 16.91 7.61 133.03 1.01 17.92 16 11 C -0.27 -11.30 8.72 22.75 0.20 -11.10 16 12 C 0.03 1.19 5.91 -19.86 -0.12 1.08 16 13 C -0.07 -1.92 5.88 -20.03 -0.12 -2.03 16 14 C -0.08 -2.18 9.44 22.47 0.21 -1.97 16 15 C -0.19 -4.74 8.24 22.33 0.18 -4.56 16 16 C 0.09 2.02 6.49 22.56 0.15 2.17 16 17 O -0.31 -6.15 10.37 -91.90 -0.95 -7.11 16 18 C 0.61 11.35 3.42 113.37 0.39 11.74 16 19 F -0.17 -3.29 15.55 44.97 0.70 -2.59 16 20 F -0.13 -2.18 17.53 44.97 0.79 -1.39 16 21 F -0.17 -3.30 15.55 44.97 0.70 -2.60 16 22 C -0.12 -2.06 9.97 22.33 0.22 -1.84 16 23 C -0.06 -1.18 9.44 22.47 0.21 -0.96 16 24 C -0.27 -8.06 9.50 22.61 0.21 -7.85 16 25 C 0.15 5.04 11.16 84.59 0.94 5.98 16 26 N -0.60 -26.68 10.38 -193.52 -2.01 -28.69 16 27 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.39 21.98 8.01 -92.71 -0.74 21.24 16 29 H 0.12 5.07 4.21 -2.91 -0.01 5.06 16 30 H 0.13 3.81 6.29 -2.91 -0.02 3.79 16 31 H 0.14 3.12 5.08 -2.91 -0.01 3.11 16 32 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.17 2.38 6.28 -2.91 -0.02 2.36 16 34 H 0.16 3.22 6.33 -2.91 -0.02 3.20 16 35 H 0.18 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -62.06 315.84 5.74 -56.33 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.46 Total: 34.06 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.77 Total: -8.38 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -2.76 Total: -111.29 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.95 Total: -7.11 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 2.19 Total: -6.58 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -62.06 5.74 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181865.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.742 kcal (2) G-P(sol) polarization free energy of solvation -62.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds