Wall clock time and date at job start Tue Mar 31 2020 14:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47084 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47173 * 29.99577 * 3 2 1 6 6 H 1.48501 * 109.47333 * 149.99895 * 3 2 1 7 7 C 1.38810 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99793 * 359.97438 * 7 2 1 9 9 N 1.36918 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.38830 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.39262 * 119.64773 * 0.02562 * 10 9 7 12 12 C 1.38447 * 119.30580 * 179.76528 * 11 10 9 13 13 C 1.38615 * 118.60637 * 0.48824 * 12 11 10 14 14 C 1.39309 * 119.24023 * 359.46794 * 13 12 11 15 15 C 1.48224 * 119.68149 * 180.27707 * 14 13 12 16 16 C 1.39361 * 120.15898 * 359.73409 * 15 14 13 17 17 C 1.37974 * 119.92863 * 179.71274 * 16 15 14 18 18 C 1.38412 * 120.24593 * 0.56114 * 17 16 15 19 19 C 1.38147 * 120.31836 * 359.71342 * 18 17 16 20 20 C 1.38616 * 120.06827 * 0.02562 * 19 18 17 21 21 O 1.35799 * 120.12357 * 179.97438 * 20 19 18 22 22 C 1.42896 * 117.00723 * 0.02562 * 21 20 19 23 23 F 1.39907 * 109.47038 * 59.99483 * 22 21 20 24 24 F 1.39895 * 109.47679 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46778 * 300.00209 * 22 21 20 26 26 N 1.32391 * 119.64284 * 180.02562 * 10 9 7 27 27 H 0.97008 * 119.99925 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00033 * 359.97438 * 9 7 2 29 29 H 1.08002 * 120.34852 * 0.03008 * 11 10 9 30 30 H 1.08003 * 120.70055 * 180.23483 * 12 11 10 31 31 H 1.08002 * 120.38292 * 179.75457 * 13 12 11 32 32 H 1.07996 * 120.03576 * 359.97319 * 16 15 14 33 33 H 1.08006 * 119.87194 * 180.24890 * 17 16 15 34 34 H 1.08002 * 119.83612 * 179.74089 * 18 17 16 35 35 H 1.08000 * 119.96831 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0097 -1.2021 0.0005 8 1 1.4697 -2.1374 0.0014 9 7 3.3789 -1.2022 0.0011 10 6 4.0730 -2.4045 0.0021 11 6 3.3692 -3.6062 0.0021 12 6 4.0685 -4.8011 -0.0017 13 6 5.4540 -4.7592 0.0049 14 6 6.0975 -3.5236 0.0039 15 6 7.5787 -3.4675 0.0047 16 6 8.3240 -4.6450 0.0120 17 6 9.7025 -4.5872 0.0067 18 6 10.3490 -3.3634 0.0059 19 6 9.6203 -2.1897 0.0043 20 6 8.2348 -2.2325 0.0042 21 8 7.5174 -1.0795 0.0032 22 6 8.2555 0.1441 0.0017 23 9 9.0609 0.2015 -1.1408 24 9 7.3671 1.2247 0.0003 25 9 9.0613 0.2038 1.1438 26 7 5.3969 -2.3963 0.0032 27 1 -0.4850 0.8401 -0.0004 28 1 3.8639 -0.3622 0.0007 29 1 2.2892 -3.6061 0.0008 30 1 3.5455 -5.7461 -0.0056 31 1 6.0282 -5.6740 0.0061 32 1 7.8231 -5.6018 0.0176 33 1 10.2792 -5.5004 0.0084 34 1 11.4284 -3.3259 0.0060 35 1 10.1306 -1.2379 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:52 Heat of formation + Delta-G solvation = -113.093042 kcal Electronic energy + Delta-G solvation = -27271.670225 eV Core-core repulsion = 22820.438972 eV Total energy + Delta-G solvation = -4451.231253 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.33002 -48.01216 -47.94942 -40.34254 -38.97752 -37.51430 -35.47080 -32.52961 -31.98258 -31.04645 -30.16080 -28.07681 -25.88939 -24.77667 -23.72616 -22.81772 -21.59388 -20.73307 -19.54577 -19.04797 -18.84014 -18.25229 -17.16975 -16.46713 -15.65748 -15.60408 -15.12104 -15.11049 -14.85264 -14.66297 -14.42527 -14.37991 -14.34177 -14.29516 -14.06605 -13.69349 -13.47259 -13.39052 -13.06825 -12.91499 -12.36265 -12.19020 -12.14837 -11.81496 -11.45650 -11.18611 -11.03283 -10.65234 -10.53840 -10.02361 -9.40392 -9.04257 -8.76465 -8.51118 -8.24350 -7.04949 -6.54853 -3.86756 0.86613 1.20804 1.70216 2.34499 2.38392 2.93379 3.05646 3.08720 3.11870 3.63686 3.91301 3.98544 4.11972 4.32185 4.57152 4.68078 4.69840 4.93535 5.04726 5.17877 5.19003 5.38818 5.56842 5.72288 5.92183 6.07851 6.09169 6.20769 6.31840 6.42438 6.51622 6.58584 6.92613 6.96403 7.15297 7.41203 7.52768 7.86976 8.46100 8.71056 9.16945 9.44315 10.55520 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.005219 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.272508 B = 5363.663398 C = 7424.439916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.303 4.303 8 H 0.121 0.879 9 N -0.563 5.563 10 C 0.376 3.624 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.279 4.279 14 C 0.206 3.794 15 C -0.033 4.033 16 C -0.069 4.069 17 C -0.144 4.144 18 C -0.081 4.081 19 C -0.201 4.201 20 C 0.134 3.866 21 O -0.258 6.258 22 C 0.591 3.409 23 F -0.173 7.173 24 F -0.132 7.132 25 F -0.173 7.173 26 N -0.547 5.547 27 H 0.278 0.722 28 H 0.383 0.617 29 H 0.130 0.870 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.839 -5.365 0.003 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.160 4.160 3 Si 0.704 3.296 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.432 4.432 8 H 0.139 0.861 9 N -0.173 5.173 10 C 0.133 3.867 11 C -0.269 4.269 12 C -0.060 4.060 13 C -0.305 4.305 14 C 0.065 3.935 15 C -0.034 4.034 16 C -0.088 4.088 17 C -0.162 4.162 18 C -0.100 4.100 19 C -0.219 4.219 20 C 0.090 3.910 21 O -0.175 6.175 22 C 0.500 3.500 23 F -0.155 7.155 24 F -0.113 7.113 25 F -0.155 7.155 26 N -0.268 5.268 27 H 0.088 0.912 28 H 0.218 0.782 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.159 0.841 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.469 -4.193 0.004 18.939 hybrid contribution 0.188 0.870 0.008 0.891 sum 18.657 -3.322 0.012 18.950 Atomic orbital electron populations 1.69667 1.05574 1.28225 1.47226 1.24966 0.95560 0.98418 0.97085 0.86624 0.80180 0.83308 0.79486 1.19232 1.19858 1.18804 1.19427 0.78774 0.96760 1.48202 0.86146 1.41031 1.05875 1.03730 1.66640 1.18011 0.87039 0.86758 0.94905 1.21331 1.00908 0.91403 1.13262 1.20957 0.93504 0.97171 0.94338 1.21114 0.94835 0.96720 1.17867 1.18794 0.90110 0.88911 0.95694 1.18151 0.91932 0.89534 1.03828 1.21160 0.93472 0.97111 0.97061 1.21062 0.94215 0.97942 1.02979 1.20930 0.99866 0.91489 0.97710 1.21478 0.91832 1.00746 1.07893 1.18807 0.89695 0.84056 0.98477 1.86948 1.32255 1.10532 1.87781 1.19712 0.74778 0.81153 0.74369 1.93266 1.74097 1.96316 1.51804 1.93308 1.69141 1.52617 1.96247 1.93263 1.74061 1.96308 1.51841 1.66991 1.06482 1.29967 1.23342 0.91155 0.78236 0.85236 0.86475 0.86773 0.84050 0.85230 0.85335 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.08 13.96 55.49 0.77 -23.30 16 2 C 0.05 1.19 5.50 -17.45 -0.10 1.10 16 3 Si 0.88 19.91 27.73 -169.99 -4.71 15.20 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.84 6.52 56.52 0.37 -5.48 16 7 C -0.30 -7.96 10.02 -15.07 -0.15 -8.11 16 8 H 0.12 3.28 5.87 -52.49 -0.31 2.97 16 9 N -0.56 -13.84 5.24 -11.17 -0.06 -13.90 16 10 C 0.38 8.72 7.61 -155.15 -1.18 7.54 16 11 C -0.24 -5.14 9.33 -39.12 -0.37 -5.50 16 12 C -0.03 -0.62 10.15 -39.37 -0.40 -1.02 16 13 C -0.28 -4.74 9.46 -39.04 -0.37 -5.11 16 14 C 0.21 3.93 6.73 -82.98 -0.56 3.37 16 15 C -0.03 -0.53 5.89 -104.77 -0.62 -1.14 16 16 C -0.07 -0.83 9.41 -39.26 -0.37 -1.20 16 17 C -0.14 -1.42 10.03 -39.61 -0.40 -1.82 16 18 C -0.08 -0.84 10.03 -39.55 -0.40 -1.23 16 19 C -0.20 -2.57 8.25 -39.48 -0.33 -2.90 16 20 C 0.13 2.14 6.49 -38.84 -0.25 1.89 16 21 O -0.26 -4.58 8.20 -19.11 -0.16 -4.74 16 22 C 0.59 8.91 3.42 101.05 0.35 9.25 16 23 F -0.17 -2.36 15.56 2.25 0.04 -2.33 16 24 F -0.13 -2.10 17.53 2.25 0.04 -2.07 16 25 F -0.17 -2.37 15.56 2.25 0.04 -2.33 16 26 N -0.55 -12.05 8.17 -8.98 -0.07 -12.12 16 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.38 9.24 5.87 -40.82 -0.24 9.00 16 29 H 0.13 2.80 5.93 -52.49 -0.31 2.49 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.11 1.53 6.18 -52.49 -0.32 1.21 16 32 H 0.14 1.40 6.18 -52.49 -0.32 1.08 16 33 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.54 5.10 -52.49 -0.27 1.27 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -28.70 312.65 -6.75 -35.45 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -2.21 Total: 10.32 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -5.13 Total: -4.89 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.64 Total: -49.32 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.16 Total: -4.74 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.20 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.70 -6.75 -35.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.640 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds