Wall clock time and date at job start Tue Mar 31 2020 14:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48501 * 109.47084 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47173 * 29.99577 * 3 2 1 6 6 H 1.48501 * 109.47333 * 149.99895 * 3 2 1 7 7 C 1.38810 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99793 * 359.97438 * 7 2 1 9 9 N 1.36918 * 120.00369 * 180.02562 * 7 2 1 10 10 C 1.38830 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.39262 * 119.64773 * 0.02562 * 10 9 7 12 12 C 1.38447 * 119.30580 * 179.76528 * 11 10 9 13 13 C 1.38615 * 118.60637 * 0.48824 * 12 11 10 14 14 C 1.39309 * 119.24023 * 359.46794 * 13 12 11 15 15 C 1.48224 * 119.68149 * 180.27707 * 14 13 12 16 16 C 1.39361 * 120.15898 * 359.73409 * 15 14 13 17 17 C 1.37974 * 119.92863 * 179.71274 * 16 15 14 18 18 C 1.38412 * 120.24593 * 0.56114 * 17 16 15 19 19 C 1.38147 * 120.31836 * 359.71342 * 18 17 16 20 20 C 1.38616 * 120.06827 * 0.02562 * 19 18 17 21 21 O 1.35799 * 120.12357 * 179.97438 * 20 19 18 22 22 C 1.42896 * 117.00723 * 0.02562 * 21 20 19 23 23 F 1.39907 * 109.47038 * 59.99483 * 22 21 20 24 24 F 1.39895 * 109.47679 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46778 * 300.00209 * 22 21 20 26 26 N 1.32391 * 119.64284 * 180.02562 * 10 9 7 27 27 H 0.97008 * 119.99925 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00033 * 359.97438 * 9 7 2 29 29 H 1.08002 * 120.34852 * 0.03008 * 11 10 9 30 30 H 1.08003 * 120.70055 * 180.23483 * 12 11 10 31 31 H 1.08002 * 120.38292 * 179.75457 * 13 12 11 32 32 H 1.07996 * 120.03576 * 359.97319 * 16 15 14 33 33 H 1.08006 * 119.87194 * 180.24890 * 17 16 15 34 34 H 1.08002 * 119.83612 * 179.74089 * 18 17 16 35 35 H 1.08000 * 119.96831 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7001 7 6 2.0097 -1.2021 0.0005 8 1 1.4697 -2.1374 0.0014 9 7 3.3789 -1.2022 0.0011 10 6 4.0730 -2.4045 0.0021 11 6 3.3692 -3.6062 0.0021 12 6 4.0685 -4.8011 -0.0017 13 6 5.4540 -4.7592 0.0049 14 6 6.0975 -3.5236 0.0039 15 6 7.5787 -3.4675 0.0047 16 6 8.3240 -4.6450 0.0120 17 6 9.7025 -4.5872 0.0067 18 6 10.3490 -3.3634 0.0059 19 6 9.6203 -2.1897 0.0043 20 6 8.2348 -2.2325 0.0042 21 8 7.5174 -1.0795 0.0032 22 6 8.2555 0.1441 0.0017 23 9 9.0609 0.2015 -1.1408 24 9 7.3671 1.2247 0.0003 25 9 9.0613 0.2038 1.1438 26 7 5.3969 -2.3963 0.0032 27 1 -0.4850 0.8401 -0.0004 28 1 3.8639 -0.3622 0.0007 29 1 2.2892 -3.6061 0.0008 30 1 3.5455 -5.7461 -0.0056 31 1 6.0282 -5.6740 0.0061 32 1 7.8231 -5.6018 0.0176 33 1 10.2792 -5.5004 0.0084 34 1 11.4284 -3.3259 0.0060 35 1 10.1306 -1.2379 0.0032 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182718.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:52 Heat of formation + Delta-G solvation = -129.231908 kcal Electronic energy + Delta-G solvation = -27272.370059 eV Core-core repulsion = 22820.438972 eV Total energy + Delta-G solvation = -4451.931087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.49445 -49.21517 -49.07836 -41.52223 -40.48135 -38.59993 -37.15854 -34.23195 -33.45215 -32.45254 -31.20964 -29.51669 -27.06086 -26.55551 -25.01245 -24.03185 -22.88200 -22.20217 -20.66153 -20.21662 -20.21124 -19.86856 -18.55996 -17.72347 -17.08488 -16.84039 -16.61568 -16.31471 -16.28647 -15.84138 -15.60508 -15.60363 -15.51874 -15.44183 -15.25002 -15.10448 -14.97131 -14.85841 -14.52904 -14.15132 -13.98219 -13.68823 -13.39420 -13.02980 -12.87511 -12.51336 -12.35264 -12.18867 -12.12864 -11.86537 -10.90769 -10.71132 -10.09153 -9.87978 -9.52524 -8.65350 -8.49542 -5.87063 -0.25988 0.27175 0.55803 0.79024 1.00837 1.24718 1.27611 1.31650 1.78564 2.12958 2.60075 2.73452 2.75484 2.88137 3.00339 3.42978 3.45636 3.67144 3.81066 4.14078 4.25065 4.34277 4.43249 4.55747 4.66271 4.74336 4.77091 5.07618 5.11118 5.30247 5.33462 5.44439 5.53072 5.59458 5.67809 5.80678 5.96991 6.13487 6.58027 6.97842 7.29588 7.69486 8.65167 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.005219 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.272508 B = 5363.663398 C = 7424.439916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.004 4.004 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.304 4.304 8 H 0.096 0.904 9 N -0.591 5.591 10 C 0.364 3.636 11 C -0.270 4.270 12 C -0.025 4.025 13 C -0.254 4.254 14 C 0.192 3.808 15 C -0.072 4.072 16 C -0.060 4.060 17 C -0.130 4.130 18 C -0.067 4.067 19 C -0.210 4.210 20 C 0.105 3.895 21 O -0.290 6.290 22 C 0.596 3.404 23 F -0.165 7.165 24 F -0.142 7.142 25 F -0.165 7.165 26 N -0.567 5.567 27 H 0.279 0.721 28 H 0.379 0.621 29 H 0.114 0.886 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.281 -8.288 0.011 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.434 4.434 8 H 0.114 0.886 9 N -0.205 5.205 10 C 0.124 3.876 11 C -0.297 4.297 12 C -0.050 4.050 13 C -0.279 4.279 14 C 0.052 3.948 15 C -0.074 4.074 16 C -0.079 4.079 17 C -0.148 4.148 18 C -0.085 4.085 19 C -0.229 4.229 20 C 0.061 3.939 21 O -0.208 6.208 22 C 0.505 3.495 23 F -0.147 7.147 24 F -0.123 7.123 25 F -0.147 7.147 26 N -0.288 5.288 27 H 0.089 0.911 28 H 0.214 0.786 29 H 0.132 0.868 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.184 0.816 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 22.985 -7.193 0.013 24.084 hybrid contribution -0.731 1.356 0.004 1.540 sum 22.254 -5.837 0.016 23.007 Atomic orbital electron populations 1.69764 1.06840 1.28896 1.50611 1.25567 0.96205 1.01240 0.97408 0.85714 0.78976 0.79693 0.79524 1.18868 1.19118 1.18639 1.19258 0.79798 0.96056 1.48275 0.88607 1.40832 1.04960 1.04085 1.70672 1.18427 0.87961 0.86978 0.94213 1.21451 1.00561 0.92505 1.15218 1.21451 0.94158 0.97384 0.92032 1.21733 0.94716 0.97929 1.13490 1.19592 0.92087 0.88855 0.94245 1.18322 0.90358 0.91214 1.07480 1.21521 0.94496 0.96464 0.95406 1.21571 0.93470 0.99444 1.00314 1.21476 1.01732 0.90618 0.94640 1.21671 0.90650 1.02335 1.08209 1.19211 0.91029 0.83506 1.00141 1.86890 1.33951 1.11686 1.88283 1.19575 0.74676 0.80518 0.74781 1.93272 1.73724 1.96252 1.51419 1.93281 1.69623 1.53120 1.96326 1.93269 1.73695 1.96245 1.51472 1.67075 1.05848 1.32066 1.23797 0.91110 0.78615 0.86827 0.82385 0.81795 0.81502 0.80856 0.81565 0.84633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 13.96 21.65 0.30 -53.72 16 2 C 0.00 -0.22 5.50 84.87 0.47 0.25 16 3 Si 0.94 43.29 27.73 68.60 1.90 45.19 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -11.81 6.52 99.48 0.65 -11.16 16 7 C -0.30 -17.14 10.02 84.04 0.84 -16.30 16 8 H 0.10 5.69 5.87 -2.91 -0.02 5.67 16 9 N -0.59 -30.74 5.24 -189.24 -0.99 -31.73 16 10 C 0.36 17.53 7.61 133.16 1.01 18.55 16 11 C -0.27 -11.74 9.33 22.57 0.21 -11.53 16 12 C -0.03 -0.84 10.15 22.41 0.23 -0.61 16 13 C -0.25 -7.69 9.46 22.62 0.21 -7.48 16 14 C 0.19 6.99 6.73 41.92 0.28 7.27 16 15 C -0.07 -2.13 5.89 -19.96 -0.12 -2.24 16 16 C -0.06 -1.14 9.41 22.48 0.21 -0.93 16 17 C -0.13 -1.75 10.03 22.25 0.22 -1.52 16 18 C -0.07 -1.01 10.03 22.29 0.22 -0.79 16 19 C -0.21 -4.78 8.25 22.34 0.18 -4.60 16 20 C 0.10 3.19 6.49 22.75 0.15 3.34 16 21 O -0.29 -10.40 8.20 -91.29 -0.75 -11.15 16 22 C 0.60 17.99 3.42 113.37 0.39 18.38 16 23 F -0.16 -4.42 15.56 44.97 0.70 -3.72 16 24 F -0.14 -4.65 17.53 44.97 0.79 -3.87 16 25 F -0.16 -4.43 15.56 44.97 0.70 -3.73 16 26 N -0.57 -25.33 8.17 -182.32 -1.49 -26.82 16 27 H 0.28 15.21 8.31 -92.70 -0.77 14.44 16 28 H 0.38 19.37 5.87 -92.71 -0.54 18.82 16 29 H 0.11 5.24 5.93 -2.91 -0.02 5.23 16 30 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 31 H 0.16 3.31 6.18 -2.91 -0.02 3.30 16 32 H 0.17 2.16 6.18 -2.91 -0.02 2.14 16 33 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.14 2.88 5.10 -2.91 -0.01 2.86 16 Total: -1.00 -68.91 312.65 6.27 -62.64 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.59 Total: 25.13 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 4.52 Total: 1.78 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -2.18 Total: -112.27 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.75 Total: -11.15 kcal Atomic # 9 Polarization: -13.50 SS G_CDS: 2.19 Total: -11.32 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.90 Total: 45.19 kcal Total: -68.91 6.27 -62.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182718.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.594 kcal (2) G-P(sol) polarization free energy of solvation -68.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds