Wall clock time and date at job start Tue Mar 31 2020 14:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47393 * 270.00056 * 3 2 1 5 5 H 1.48494 * 109.46977 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.46529 * 150.00194 * 3 2 1 7 7 C 1.38759 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.39379 * 119.99833 * 179.97438 * 9 7 2 11 11 C 1.39091 * 120.03038 * 179.97438 * 10 9 7 12 12 C 1.37995 * 119.96721 * 180.02562 * 11 10 9 13 13 C 1.38825 * 120.03131 * 0.02562 * 12 11 10 14 14 O 1.35924 * 119.96772 * 179.97438 * 13 12 11 15 15 C 1.35668 * 117.99818 * 76.90334 * 14 13 12 16 16 C 1.38947 * 119.68443 * 175.18375 * 15 14 13 17 17 C 1.38376 * 119.10849 * 180.02562 * 16 15 14 18 18 C 1.38836 * 118.48678 * 359.72666 * 17 16 15 19 19 C 1.50698 * 120.35678 * 180.28888 * 18 17 16 20 20 F 1.39893 * 109.47427 * 180.22942 * 19 18 17 21 21 F 1.39900 * 109.46804 * 300.23295 * 19 18 17 22 22 F 1.39900 * 109.46974 * 60.22524 * 19 18 17 23 23 C 1.38058 * 119.29251 * 0.51224 * 18 17 16 24 24 N 1.31955 * 120.83878 * 359.47717 * 23 18 17 25 25 C 1.38820 * 120.06272 * 0.24881 * 13 12 11 26 26 C 1.37986 * 120.03375 * 359.49779 * 25 13 12 27 27 H 0.96994 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99889 * 359.97438 * 9 7 2 29 29 H 1.07994 * 120.02306 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.98389 * 179.97438 * 12 11 10 31 31 H 1.07993 * 120.44565 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.75829 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.58186 * 179.75090 * 23 18 17 34 34 H 1.08003 * 119.98237 * 179.74517 * 25 13 12 35 35 H 1.07996 * 120.01687 * 180.25179 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0100 -1.2017 -0.0005 8 1 3.0900 -1.2017 -0.0010 9 7 1.3258 -2.3867 -0.0016 10 6 2.0227 -3.5938 -0.0027 11 6 1.3279 -4.7987 -0.0032 12 6 2.0192 -5.9930 -0.0038 13 6 3.4075 -5.9922 -0.0032 14 8 4.0871 -7.1693 -0.0032 15 6 4.1710 -7.8564 -1.1701 16 6 4.9406 -9.0114 -1.2348 17 6 5.0182 -9.7025 -2.4311 18 6 4.3151 -9.2147 -3.5244 19 6 4.3644 -9.9376 -4.8458 20 9 3.5846 -9.2509 -5.7824 21 9 5.6879 -9.9977 -5.2952 22 9 3.8668 -11.2353 -4.6862 23 6 3.5739 -8.0578 -3.3894 24 7 3.5192 -7.4203 -2.2353 25 6 4.1022 -4.7904 0.0031 26 6 3.4137 -3.5946 -0.0017 27 1 -0.4850 0.8400 -0.0004 28 1 0.3558 -2.3867 -0.0016 29 1 0.2480 -4.7997 -0.0024 30 1 1.4801 -6.9287 -0.0038 31 1 5.4718 -9.3645 -0.3634 32 1 5.6082 -10.6034 -2.5112 33 1 3.0284 -7.6720 -4.2379 34 1 5.1823 -4.7913 0.0077 35 1 3.9544 -2.6598 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:50 Heat of formation + Delta-G solvation = -111.888339 kcal Electronic energy + Delta-G solvation = -25661.111153 eV Core-core repulsion = 21209.932139 eV Total energy + Delta-G solvation = -4451.179013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.32971 -47.85316 -47.79140 -40.86936 -38.99410 -37.54709 -34.76652 -32.97278 -32.04772 -31.37025 -30.12531 -27.74154 -26.10461 -24.87981 -23.94002 -22.67453 -22.03775 -20.92396 -18.82346 -18.66462 -18.57526 -18.37866 -17.81148 -17.11281 -16.64120 -15.51784 -14.98629 -14.94205 -14.74919 -14.67434 -14.44817 -14.23905 -14.19627 -14.05451 -13.98335 -13.95530 -13.45777 -13.37993 -13.18191 -12.59194 -12.43244 -12.15195 -12.02155 -11.90593 -11.35863 -11.27523 -10.73420 -10.46382 -10.26422 -10.20742 -9.89414 -9.71390 -8.88386 -8.71064 -8.15971 -6.81990 -6.72695 -3.88567 0.71578 0.98406 2.08122 2.34368 2.48368 3.04662 3.09075 3.11973 3.38719 3.47488 3.62176 3.83244 3.93133 4.23788 4.25737 4.50795 4.57879 4.87957 4.92439 5.09258 5.10606 5.44885 5.52521 5.68519 5.69590 5.71428 6.02641 6.22362 6.43376 6.57819 6.83057 6.97739 7.18315 7.31257 7.34634 7.48337 7.60821 7.72512 8.17357 8.59266 9.16369 9.35813 10.43172 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002463 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.012382 B =11365.724847 C =11837.809085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.022 3.978 3 Si 0.934 3.066 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.212 3.788 11 C -0.231 4.231 12 C -0.038 4.038 13 C -0.074 4.074 14 O -0.224 6.224 15 C 0.349 3.651 16 C -0.201 4.201 17 C 0.005 3.995 18 C -0.298 4.298 19 C 0.522 3.478 20 F -0.177 7.177 21 F -0.179 7.179 22 F -0.179 7.179 23 C 0.197 3.803 24 N -0.514 5.514 25 C -0.046 4.046 26 C -0.214 4.214 27 H 0.277 0.723 28 H 0.401 0.599 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.924 -16.893 -5.569 19.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.146 5.146 10 C 0.088 3.912 11 C -0.256 4.256 12 C -0.058 4.058 13 C -0.119 4.119 14 O -0.128 6.128 15 C 0.172 3.828 16 C -0.221 4.221 17 C -0.020 4.020 18 C -0.302 4.302 19 C 0.467 3.533 20 F -0.158 7.158 21 F -0.160 7.160 22 F -0.160 7.160 23 C 0.038 3.962 24 N -0.235 5.235 25 C -0.066 4.066 26 C -0.238 4.238 27 H 0.087 0.913 28 H 0.236 0.764 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.169 0.831 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.125 0.875 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.371 -15.640 -5.202 18.055 hybrid contribution 0.271 0.037 -0.486 0.558 sum 7.642 -15.603 -5.688 18.281 Atomic orbital electron populations 1.69691 1.06084 1.28912 1.47569 1.25361 0.95777 1.00162 0.96949 0.85781 0.79180 0.80316 0.78700 1.20049 1.20567 1.19154 1.19799 0.93257 0.82659 1.47560 0.87718 1.41162 1.08325 1.02200 1.62879 1.17894 0.91687 0.85976 0.95614 1.20051 0.98341 0.90775 1.16394 1.20489 0.92387 0.96870 0.96072 1.17763 0.89870 0.81960 1.22335 1.84880 1.69033 1.33369 1.25477 1.20978 0.86973 0.88623 0.86254 1.21057 1.04663 0.96643 0.99776 1.21032 0.93115 0.97563 0.90308 1.20760 1.11795 1.03081 0.94577 1.17989 0.73609 0.76933 0.84754 1.93169 1.75156 1.79439 1.68032 1.93212 1.35882 1.96309 1.90631 1.93210 1.87609 1.39517 1.95709 1.22446 0.90978 0.87965 0.94786 1.67780 1.23135 1.33275 0.99354 1.20540 0.98291 0.90935 0.96865 1.20238 0.92466 0.96948 1.14161 0.91259 0.76390 0.87294 0.87860 0.83128 0.83541 0.81398 0.87471 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.91 13.05 55.49 0.72 -22.18 16 2 C 0.02 0.53 5.50 -17.45 -0.10 0.44 16 3 Si 0.93 19.16 29.55 -169.99 -5.02 14.14 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.30 -7.49 9.55 -15.13 -0.14 -7.63 16 8 H 0.11 2.48 5.68 -52.49 -0.30 2.18 16 9 N -0.55 -12.99 5.44 -9.59 -0.05 -13.05 16 10 C 0.21 4.64 6.62 -83.79 -0.55 4.09 16 11 C -0.23 -4.61 9.89 -39.35 -0.39 -5.00 16 12 C -0.04 -0.71 9.55 -39.45 -0.38 -1.09 16 13 C -0.07 -1.38 5.16 -39.15 -0.20 -1.58 16 14 O -0.22 -3.79 9.96 -2.98 -0.03 -3.82 16 15 C 0.35 5.21 7.41 -17.10 -0.13 5.08 16 16 C -0.20 -2.25 10.05 -39.27 -0.39 -2.64 16 17 C 0.00 0.05 9.76 -39.31 -0.38 -0.34 16 18 C -0.30 -3.25 5.38 -104.47 -0.56 -3.82 16 19 C 0.52 5.34 3.33 36.00 0.12 5.46 16 20 F -0.18 -1.87 15.99 2.25 0.04 -1.83 16 21 F -0.18 -1.86 17.24 2.25 0.04 -1.82 16 22 F -0.18 -1.84 17.25 2.25 0.04 -1.80 16 23 C 0.20 2.49 10.59 -17.56 -0.19 2.30 16 24 N -0.51 -8.00 9.06 -13.32 -0.12 -8.12 16 25 C -0.05 -0.88 9.98 -39.46 -0.39 -1.27 16 26 C -0.21 -4.45 9.30 -39.36 -0.37 -4.82 16 27 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.40 9.65 7.90 -40.82 -0.32 9.33 16 29 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 30 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.17 1.82 7.16 -52.48 -0.38 1.45 16 34 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 35 H 0.12 2.49 5.95 -52.49 -0.31 2.18 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -26.45 326.21 -6.09 -32.54 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -2.56 Total: 11.85 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -4.06 Total: -10.82 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.55 Total: -43.35 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.03 Total: -3.82 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.46 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.45 -6.09 -32.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.353 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds