Wall clock time and date at job start Tue Mar 31 2020 14:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99907 * 2 1 4 4 H 1.48492 * 109.47393 * 270.00056 * 3 2 1 5 5 H 1.48494 * 109.46977 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.46529 * 150.00194 * 3 2 1 7 7 C 1.38759 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00392 * 179.97438 * 7 2 1 9 9 N 1.36837 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.39379 * 119.99833 * 179.97438 * 9 7 2 11 11 C 1.39091 * 120.03038 * 179.97438 * 10 9 7 12 12 C 1.37995 * 119.96721 * 180.02562 * 11 10 9 13 13 C 1.38825 * 120.03131 * 0.02562 * 12 11 10 14 14 O 1.35924 * 119.96772 * 179.97438 * 13 12 11 15 15 C 1.35668 * 117.99818 * 76.90334 * 14 13 12 16 16 C 1.38947 * 119.68443 * 175.18375 * 15 14 13 17 17 C 1.38376 * 119.10849 * 180.02562 * 16 15 14 18 18 C 1.38836 * 118.48678 * 359.72666 * 17 16 15 19 19 C 1.50698 * 120.35678 * 180.28888 * 18 17 16 20 20 F 1.39893 * 109.47427 * 180.22942 * 19 18 17 21 21 F 1.39900 * 109.46804 * 300.23295 * 19 18 17 22 22 F 1.39900 * 109.46974 * 60.22524 * 19 18 17 23 23 C 1.38058 * 119.29251 * 0.51224 * 18 17 16 24 24 N 1.31955 * 120.83878 * 359.47717 * 23 18 17 25 25 C 1.38820 * 120.06272 * 0.24881 * 13 12 11 26 26 C 1.37986 * 120.03375 * 359.49779 * 25 13 12 27 27 H 0.96994 * 119.99916 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99889 * 359.97438 * 9 7 2 29 29 H 1.07994 * 120.02306 * 359.97438 * 11 10 9 30 30 H 1.07994 * 119.98389 * 179.97438 * 12 11 10 31 31 H 1.07993 * 120.44565 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.75829 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.58186 * 179.75090 * 23 18 17 34 34 H 1.08003 * 119.98237 * 179.74517 * 25 13 12 35 35 H 1.07996 * 120.01687 * 180.25179 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0100 -1.2017 -0.0005 8 1 3.0900 -1.2017 -0.0010 9 7 1.3258 -2.3867 -0.0016 10 6 2.0227 -3.5938 -0.0027 11 6 1.3279 -4.7987 -0.0032 12 6 2.0192 -5.9930 -0.0038 13 6 3.4075 -5.9922 -0.0032 14 8 4.0871 -7.1693 -0.0032 15 6 4.1710 -7.8564 -1.1701 16 6 4.9406 -9.0114 -1.2348 17 6 5.0182 -9.7025 -2.4311 18 6 4.3151 -9.2147 -3.5244 19 6 4.3644 -9.9376 -4.8458 20 9 3.5846 -9.2509 -5.7824 21 9 5.6879 -9.9977 -5.2952 22 9 3.8668 -11.2353 -4.6862 23 6 3.5739 -8.0578 -3.3894 24 7 3.5192 -7.4203 -2.2353 25 6 4.1022 -4.7904 0.0031 26 6 3.4137 -3.5946 -0.0017 27 1 -0.4850 0.8400 -0.0004 28 1 0.3558 -2.3867 -0.0016 29 1 0.2480 -4.7997 -0.0024 30 1 1.4801 -6.9287 -0.0038 31 1 5.4718 -9.3645 -0.3634 32 1 5.6082 -10.6034 -2.5112 33 1 3.0284 -7.6720 -4.2379 34 1 5.1823 -4.7913 0.0077 35 1 3.9544 -2.6598 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183234.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:49 Heat of formation + Delta-G solvation = -126.262374 kcal Electronic energy + Delta-G solvation = -25661.734457 eV Core-core repulsion = 21209.932139 eV Total energy + Delta-G solvation = -4451.802318 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.16208 -48.68947 -48.61618 -42.00541 -40.36364 -39.00067 -36.40026 -33.95383 -33.66310 -32.47470 -31.71935 -29.29995 -27.17642 -26.43933 -25.03931 -23.70318 -23.62024 -22.35373 -20.00781 -19.59767 -19.48855 -19.44167 -19.31151 -18.37867 -18.08734 -16.95037 -16.36234 -16.22464 -15.85878 -15.65574 -15.50773 -15.29642 -15.06548 -15.04746 -14.97756 -14.82457 -14.79581 -14.76627 -14.15476 -14.13134 -14.08135 -13.74864 -13.29238 -12.96326 -12.94342 -12.85889 -12.42306 -12.08340 -11.85089 -11.50084 -11.15164 -10.75602 -10.57685 -9.83267 -9.73743 -8.50496 -8.50439 -5.74263 -0.27277 0.08886 0.57480 0.72729 1.42108 1.45581 1.53967 1.61736 2.16310 2.26635 2.45959 2.70309 2.92608 2.98568 3.22880 3.36929 3.39380 3.42098 3.68871 3.94803 4.02488 4.13485 4.19259 4.54988 4.62598 4.64455 4.82422 4.83725 4.91584 5.15076 5.28067 5.31656 5.52162 5.69393 5.73117 5.84312 6.03302 6.55984 6.79375 6.81448 7.45069 7.58671 8.67610 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.002463 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.012382 B =11365.724847 C =11837.809085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.029 4.029 3 Si 0.997 3.003 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.318 4.318 8 H 0.107 0.893 9 N -0.577 5.577 10 C 0.200 3.800 11 C -0.233 4.233 12 C -0.042 4.042 13 C -0.048 4.048 14 O -0.236 6.236 15 C 0.322 3.678 16 C -0.186 4.186 17 C 0.016 3.984 18 C -0.287 4.287 19 C 0.529 3.471 20 F -0.179 7.179 21 F -0.177 7.177 22 F -0.176 7.176 23 C 0.183 3.817 24 N -0.549 5.549 25 C -0.051 4.051 26 C -0.224 4.224 27 H 0.275 0.725 28 H 0.393 0.607 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.178 0.822 34 H 0.131 0.869 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 -19.750 -6.092 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.228 4.228 3 Si 0.820 3.180 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.448 4.448 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.081 3.919 11 C -0.257 4.257 12 C -0.062 4.062 13 C -0.093 4.093 14 O -0.140 6.140 15 C 0.145 3.855 16 C -0.206 4.206 17 C -0.009 4.009 18 C -0.291 4.291 19 C 0.474 3.526 20 F -0.161 7.161 21 F -0.158 7.158 22 F -0.158 7.158 23 C 0.025 3.975 24 N -0.271 5.271 25 C -0.070 4.070 26 C -0.248 4.248 27 H 0.084 0.916 28 H 0.227 0.773 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.196 0.804 32 H 0.203 0.797 33 H 0.195 0.805 34 H 0.149 0.851 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.631 -18.573 -5.746 21.697 hybrid contribution -0.224 0.381 -0.428 0.615 sum 9.407 -18.192 -6.174 21.391 Atomic orbital electron populations 1.69796 1.07354 1.29228 1.50481 1.26165 0.96514 1.02968 0.97145 0.84838 0.78119 0.76473 0.78534 1.19904 1.20643 1.18300 1.20031 0.93480 0.83464 1.47804 0.87568 1.41079 1.07781 1.02439 1.66715 1.18269 0.92348 0.86206 0.95084 1.20274 0.99095 0.90637 1.15681 1.20722 0.92767 0.97139 0.95541 1.17899 0.89996 0.82878 1.18538 1.84757 1.69382 1.32661 1.27200 1.21095 0.89111 0.89851 0.85443 1.21354 1.03200 0.94812 1.01260 1.21490 0.92247 0.98182 0.88976 1.20889 1.10693 1.02178 0.95334 1.17822 0.73613 0.76853 0.84313 1.93172 1.75252 1.79530 1.68104 1.93222 1.35738 1.96294 1.90575 1.93222 1.87593 1.39283 1.95671 1.22604 0.91839 0.88750 0.94263 1.67638 1.24247 1.34769 1.00413 1.20784 0.99586 0.90410 0.96268 1.20369 0.92245 0.97728 1.14500 0.91551 0.77320 0.86347 0.85963 0.80365 0.79687 0.80538 0.85138 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.31 13.05 21.64 0.28 -50.02 16 2 C -0.03 -1.48 5.50 84.85 0.47 -1.02 16 3 Si 1.00 40.41 29.55 68.60 2.03 42.44 16 4 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.32 -16.35 9.55 84.04 0.80 -15.55 16 8 H 0.11 5.21 5.68 -2.91 -0.02 5.19 16 9 N -0.58 -28.67 5.44 -184.25 -1.00 -29.68 16 10 C 0.20 8.94 6.62 38.35 0.25 9.20 16 11 C -0.23 -9.29 9.89 22.42 0.22 -9.07 16 12 C -0.04 -1.52 9.55 22.35 0.21 -1.31 16 13 C -0.05 -1.70 5.16 22.55 0.12 -1.59 16 14 O -0.24 -7.39 9.96 -33.56 -0.33 -7.73 16 15 C 0.32 8.76 7.41 84.80 0.63 9.38 16 16 C -0.19 -3.42 10.05 22.47 0.23 -3.19 16 17 C 0.02 0.24 9.76 22.45 0.22 0.45 16 18 C -0.29 -5.32 5.38 -19.76 -0.11 -5.43 16 19 C 0.53 9.16 3.33 71.24 0.24 9.40 16 20 F -0.18 -3.38 15.99 44.97 0.72 -2.66 16 21 F -0.18 -3.09 17.24 44.97 0.78 -2.31 16 22 F -0.18 -3.04 17.25 44.97 0.78 -2.26 16 23 C 0.18 4.25 10.59 84.63 0.90 5.15 16 24 N -0.55 -16.10 9.06 -308.90 -2.80 -18.90 16 25 C -0.05 -1.87 9.98 22.35 0.22 -1.65 16 26 C -0.22 -9.37 9.30 22.42 0.21 -9.17 16 27 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 28 H 0.39 20.06 7.90 -92.71 -0.73 19.33 16 29 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 30 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 32 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 33 H 0.18 3.59 7.16 -2.91 -0.02 3.57 16 34 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.12 4.94 5.95 -2.91 -0.02 4.93 16 Total: -1.00 -58.60 326.21 5.50 -53.10 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.45 Total: 32.40 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 4.61 Total: -14.38 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -3.52 Total: -98.60 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.33 Total: -7.73 kcal Atomic # 9 Polarization: -9.51 SS G_CDS: 2.27 Total: -7.24 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -58.60 5.50 -53.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183234.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.160 kcal (2) G-P(sol) polarization free energy of solvation -58.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds