Wall clock time and date at job start Tue Mar 31 2020 14:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48491 * 109.47116 * 270.00067 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00087 * 3 2 1 6 6 H 1.48504 * 109.47289 * 149.99565 * 3 2 1 7 7 C 1.38805 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00277 * 179.97438 * 7 2 1 9 9 N 1.36843 * 119.99313 * 0.02562 * 7 2 1 10 10 C 1.39345 * 119.99617 * 179.97438 * 9 7 2 11 11 C 1.39179 * 120.44716 * 359.71740 * 10 9 7 12 12 N 1.31776 * 120.90130 * 179.77346 * 11 10 9 13 13 C 1.31776 * 121.95189 * 0.49383 * 12 11 10 14 14 C 1.39402 * 120.78923 * 359.77464 * 13 12 11 15 15 C 1.48377 * 120.49237 * 179.97438 * 14 13 12 16 16 C 1.39373 * 120.06567 * 179.74365 * 15 14 13 17 17 C 1.37905 * 119.93693 * 179.72291 * 16 15 14 18 18 C 1.38838 * 120.06093 * 0.57834 * 17 16 15 19 19 O 1.35871 * 119.93403 * 179.69621 * 18 17 16 20 20 C 1.42904 * 117.00108 * 359.97438 * 19 18 17 21 21 F 1.39899 * 109.47240 * 59.99291 * 20 19 18 22 22 F 1.39894 * 109.47324 * 180.02562 * 20 19 18 23 23 F 1.39907 * 109.46369 * 299.99493 * 20 19 18 24 24 C 1.38827 * 120.12692 * 359.68030 * 18 17 16 25 25 C 1.37906 * 120.06987 * 0.03840 * 24 18 17 26 26 C 1.39238 * 120.44967 * 179.97438 * 10 9 7 27 27 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00416 * 359.97438 * 9 7 2 29 29 H 1.07995 * 119.54828 * 359.97438 * 11 10 9 30 30 H 1.07992 * 119.61158 * 179.74654 * 13 12 11 31 31 H 1.08001 * 120.02892 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.96903 * 180.25796 * 17 16 15 33 33 H 1.08000 * 119.96621 * 180.02562 * 24 18 17 34 34 H 1.07999 * 120.03296 * 180.02562 * 25 24 18 35 35 H 1.08002 * 120.88009 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4402 0.7001 7 6 2.0099 -1.2021 0.0005 8 1 3.0899 -1.2021 0.0001 9 7 1.3256 -2.3871 0.0005 10 6 2.0223 -3.5939 0.0005 11 6 3.4140 -3.6048 -0.0054 12 7 4.0819 -4.7407 -0.0010 13 6 3.4715 -5.9086 -0.0005 14 6 2.0797 -5.9863 0.0000 15 6 1.3992 -7.3048 0.0000 16 6 0.0071 -7.3722 0.0059 17 6 -0.6226 -8.5990 0.0001 18 6 0.1289 -9.7665 0.0005 19 8 -0.4942 -10.9739 0.0010 20 6 -1.9232 -10.9665 0.0017 21 9 -2.3867 -10.3047 -1.1404 22 9 -2.3964 -12.2830 0.0027 23 9 -2.3855 -10.3044 1.1442 24 6 1.5157 -9.7025 0.0000 25 6 2.1509 -8.4784 0.0000 26 6 1.3355 -4.8051 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3871 0.0005 29 1 3.9539 -2.6695 -0.0104 30 1 4.0564 -6.8164 -0.0009 31 1 -0.5779 -6.4643 0.0101 32 1 -1.7012 -8.6518 0.0005 33 1 2.0977 -10.6122 -0.0001 34 1 3.2298 -8.4293 -0.0008 35 1 0.2558 -4.8302 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:03 Heat of formation + Delta-G solvation = -132.973017 kcal Electronic energy + Delta-G solvation = -25686.556147 eV Core-core repulsion = 21234.462834 eV Total energy + Delta-G solvation = -4452.093314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.67915 -48.41446 -48.26083 -40.42046 -39.26598 -37.67377 -35.57798 -32.52766 -32.31417 -31.28438 -29.27735 -27.98934 -26.17372 -24.99402 -23.76984 -23.05201 -21.72105 -20.87308 -19.83197 -19.38378 -19.15843 -18.02717 -17.29697 -16.56033 -16.07550 -15.58794 -15.44331 -15.28819 -15.03041 -14.73075 -14.66405 -14.65674 -14.55513 -14.37565 -14.21796 -14.01453 -13.61907 -13.48943 -13.34881 -13.20695 -12.27830 -12.27279 -11.99163 -11.94832 -11.50846 -11.28774 -10.91289 -10.76286 -10.49489 -10.44227 -9.52194 -9.18351 -9.06617 -8.58245 -7.86032 -6.97361 -6.76618 -3.93882 0.80343 1.20970 1.27415 2.28694 2.38639 2.61891 3.07189 3.08445 3.11650 3.54365 3.60998 3.82160 3.90263 4.52088 4.61354 4.65170 4.78650 4.97690 5.08398 5.09617 5.20247 5.33897 5.63043 5.70354 5.79963 5.93046 6.00858 6.09352 6.21624 6.31218 6.52989 6.62533 6.83490 6.98201 7.07185 7.17322 7.40402 7.73504 8.54040 8.98730 9.12984 9.30170 10.39034 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002470 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.640399 B =11334.084980 C =12409.219007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.543 5.543 10 C 0.159 3.841 11 C -0.001 4.001 12 N -0.438 5.438 13 C -0.034 4.034 14 C -0.047 4.047 15 C -0.031 4.031 16 C -0.074 4.074 17 C -0.186 4.186 18 C 0.086 3.914 19 O -0.312 6.312 20 C 0.603 3.397 21 F -0.165 7.165 22 F -0.135 7.135 23 F -0.165 7.165 24 C -0.119 4.119 25 C -0.079 4.079 26 C -0.196 4.196 27 H 0.278 0.722 28 H 0.401 0.599 29 H 0.146 0.854 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -18.046 0.007 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.143 5.143 10 C 0.034 3.966 11 C -0.170 4.170 12 N -0.145 5.145 13 C -0.194 4.194 14 C -0.050 4.050 15 C -0.032 4.032 16 C -0.092 4.092 17 C -0.204 4.204 18 C 0.045 3.955 19 O -0.232 6.232 20 C 0.512 3.488 21 F -0.147 7.147 22 F -0.117 7.117 23 F -0.147 7.147 24 C -0.138 4.138 25 C -0.096 4.096 26 C -0.227 4.227 27 H 0.088 0.912 28 H 0.236 0.764 29 H 0.163 0.837 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.470 -17.704 0.015 17.876 hybrid contribution -1.614 0.830 -0.007 1.815 sum -4.084 -16.875 0.008 17.362 Atomic orbital electron populations 1.69668 1.06136 1.29024 1.47280 1.25363 0.95776 1.00198 0.96760 0.85769 0.79246 0.80169 0.78761 1.19995 1.20562 1.19014 1.19794 0.93230 0.82535 1.47857 0.87614 1.41015 1.08201 1.01866 1.63263 1.18690 0.93174 0.86492 0.98293 1.22041 0.89745 0.95820 1.09362 1.67183 1.40717 0.98187 1.08382 1.21798 0.90186 0.95131 1.12248 1.19114 0.94357 0.90561 1.00947 1.18948 0.92633 0.92950 0.98667 1.21124 0.94093 0.97074 0.96923 1.21410 1.00105 0.92229 1.06664 1.18729 0.92361 0.81260 1.03189 1.86377 1.15825 1.31579 1.89421 1.19362 0.80055 0.74577 0.74781 1.93307 1.89073 1.80852 1.51498 1.93293 1.86931 1.35097 1.96334 1.93309 1.89112 1.80857 1.51467 1.20305 0.89867 0.99158 1.04442 1.21145 1.00590 0.90149 0.97761 1.20627 0.98569 0.90588 1.12876 0.91189 0.76426 0.83657 0.84971 0.84567 0.85098 0.84478 0.83937 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.45 13.05 55.49 0.72 -21.73 16 2 C 0.02 0.57 5.50 -17.45 -0.10 0.48 16 3 Si 0.93 18.89 29.55 -169.99 -5.02 13.87 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.30 -7.38 9.57 -15.11 -0.14 -7.52 16 8 H 0.11 2.45 5.70 -52.49 -0.30 2.16 16 9 N -0.54 -12.59 5.44 -9.53 -0.05 -12.64 16 10 C 0.16 3.41 6.64 -83.72 -0.56 2.86 16 11 C 0.00 -0.02 10.47 -17.23 -0.18 -0.20 16 12 N -0.44 -8.99 10.34 -12.75 -0.13 -9.12 16 13 C -0.03 -0.62 10.60 -17.14 -0.18 -0.80 16 14 C -0.05 -0.82 5.89 -104.78 -0.62 -1.44 16 15 C -0.03 -0.45 5.88 -104.88 -0.62 -1.07 16 16 C -0.07 -1.01 9.43 -39.28 -0.37 -1.38 16 17 C -0.19 -2.31 8.24 -39.48 -0.33 -2.63 16 18 C 0.09 1.04 6.49 -39.14 -0.25 0.79 16 19 O -0.31 -3.52 10.37 -19.33 -0.20 -3.72 16 20 C 0.60 6.12 3.42 101.05 0.35 6.47 16 21 F -0.17 -1.71 15.55 2.25 0.04 -1.68 16 22 F -0.14 -1.27 17.53 2.25 0.04 -1.23 16 23 F -0.17 -1.72 15.55 2.25 0.04 -1.68 16 24 C -0.12 -1.33 9.97 -39.49 -0.39 -1.73 16 25 C -0.08 -0.96 9.43 -39.28 -0.37 -1.33 16 26 C -0.20 -3.73 9.40 -38.70 -0.36 -4.10 16 27 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.40 9.36 7.91 -40.82 -0.32 9.04 16 29 H 0.15 3.08 5.96 -52.49 -0.31 2.77 16 30 H 0.13 1.99 6.21 -52.49 -0.33 1.66 16 31 H 0.14 1.76 6.26 -52.49 -0.33 1.43 16 32 H 0.13 1.47 5.08 -52.49 -0.27 1.21 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.48 6.22 -52.49 -0.33 1.15 16 35 H 0.12 1.99 6.32 -52.49 -0.33 1.66 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -25.83 315.67 -6.01 -31.85 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -2.07 Total: 12.93 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -4.12 Total: -11.60 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.54 Total: -43.49 kcal Atomic # 8 Polarization: -3.52 SS G_CDS: -0.20 Total: -3.72 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.83 -6.01 -31.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.127 kcal (2) G-P(sol) polarization free energy of solvation -25.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds