Wall clock time and date at job start Tue Mar 31 2020 14:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86803 * 120.00248 * 2 1 4 4 H 1.48491 * 109.47116 * 270.00067 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00087 * 3 2 1 6 6 H 1.48504 * 109.47289 * 149.99565 * 3 2 1 7 7 C 1.38805 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00277 * 179.97438 * 7 2 1 9 9 N 1.36843 * 119.99313 * 0.02562 * 7 2 1 10 10 C 1.39345 * 119.99617 * 179.97438 * 9 7 2 11 11 C 1.39179 * 120.44716 * 359.71740 * 10 9 7 12 12 N 1.31776 * 120.90130 * 179.77346 * 11 10 9 13 13 C 1.31776 * 121.95189 * 0.49383 * 12 11 10 14 14 C 1.39402 * 120.78923 * 359.77464 * 13 12 11 15 15 C 1.48377 * 120.49237 * 179.97438 * 14 13 12 16 16 C 1.39373 * 120.06567 * 179.74365 * 15 14 13 17 17 C 1.37905 * 119.93693 * 179.72291 * 16 15 14 18 18 C 1.38838 * 120.06093 * 0.57834 * 17 16 15 19 19 O 1.35871 * 119.93403 * 179.69621 * 18 17 16 20 20 C 1.42904 * 117.00108 * 359.97438 * 19 18 17 21 21 F 1.39899 * 109.47240 * 59.99291 * 20 19 18 22 22 F 1.39894 * 109.47324 * 180.02562 * 20 19 18 23 23 F 1.39907 * 109.46369 * 299.99493 * 20 19 18 24 24 C 1.38827 * 120.12692 * 359.68030 * 18 17 16 25 25 C 1.37906 * 120.06987 * 0.03840 * 24 18 17 26 26 C 1.39238 * 120.44967 * 179.97438 * 10 9 7 27 27 H 0.97000 * 120.00161 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00416 * 359.97438 * 9 7 2 29 29 H 1.07995 * 119.54828 * 359.97438 * 11 10 9 30 30 H 1.07992 * 119.61158 * 179.74654 * 13 12 11 31 31 H 1.08001 * 120.02892 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.96903 * 180.25796 * 17 16 15 33 33 H 1.08000 * 119.96621 * 180.02562 * 24 18 17 34 34 H 1.07999 * 120.03296 * 180.02562 * 25 24 18 35 35 H 1.08002 * 120.88009 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4474 2.6526 0.7000 6 1 3.5474 1.4402 0.7001 7 6 2.0099 -1.2021 0.0005 8 1 3.0899 -1.2021 0.0001 9 7 1.3256 -2.3871 0.0005 10 6 2.0223 -3.5939 0.0005 11 6 3.4140 -3.6048 -0.0054 12 7 4.0819 -4.7407 -0.0010 13 6 3.4715 -5.9086 -0.0005 14 6 2.0797 -5.9863 0.0000 15 6 1.3992 -7.3048 0.0000 16 6 0.0071 -7.3722 0.0059 17 6 -0.6226 -8.5990 0.0001 18 6 0.1289 -9.7665 0.0005 19 8 -0.4942 -10.9739 0.0010 20 6 -1.9232 -10.9665 0.0017 21 9 -2.3867 -10.3047 -1.1404 22 9 -2.3964 -12.2830 0.0027 23 9 -2.3855 -10.3044 1.1442 24 6 1.5157 -9.7025 0.0000 25 6 2.1509 -8.4784 0.0000 26 6 1.3355 -4.8051 0.0011 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3871 0.0005 29 1 3.9539 -2.6695 -0.0104 30 1 4.0564 -6.8164 -0.0009 31 1 -0.5779 -6.4643 0.0101 32 1 -1.7012 -8.6518 0.0005 33 1 2.0977 -10.6122 -0.0001 34 1 3.2298 -8.4293 -0.0008 35 1 0.2558 -4.8302 0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:03 Heat of formation + Delta-G solvation = -146.493999 kcal Electronic energy + Delta-G solvation = -25687.142461 eV Core-core repulsion = 21234.462834 eV Total energy + Delta-G solvation = -4452.679627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.49073 -49.20573 -49.08610 -41.45832 -40.69054 -38.76443 -37.20721 -34.08149 -33.78631 -32.28800 -30.69343 -29.39022 -27.18766 -26.60512 -25.06109 -24.18336 -23.02042 -22.19033 -20.75815 -20.20286 -20.05845 -19.70105 -18.58647 -17.71667 -17.45685 -16.77162 -16.77075 -16.29898 -16.02426 -15.90112 -15.75136 -15.56118 -15.48937 -15.35026 -15.22015 -15.20228 -15.03276 -14.89791 -14.48206 -14.20457 -13.71290 -13.54900 -13.46201 -13.22035 -13.07535 -12.71227 -12.36580 -12.27347 -12.09634 -11.88875 -10.89627 -10.71508 -10.16824 -10.13219 -9.16693 -8.59228 -8.52687 -5.77424 -0.36482 0.25104 0.42023 0.80250 0.92127 1.43135 1.48874 1.54863 1.78186 2.25545 2.56341 2.72493 2.92513 3.00313 3.26184 3.44411 3.57279 3.66487 3.69386 4.03453 4.07792 4.21432 4.28303 4.34160 4.49734 4.73965 4.78516 4.97923 5.00779 5.18469 5.25373 5.28322 5.34386 5.49414 5.68182 5.73334 5.86116 6.13347 6.76384 7.32759 7.46237 7.57813 8.64961 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022401 B = 0.002470 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.640399 B =11334.084980 C =12409.219007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.025 4.025 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.320 4.320 8 H 0.107 0.893 9 N -0.570 5.570 10 C 0.152 3.848 11 C -0.025 4.025 12 N -0.451 5.451 13 C -0.022 4.022 14 C -0.036 4.036 15 C -0.058 4.058 16 C -0.078 4.078 17 C -0.192 4.192 18 C 0.089 3.911 19 O -0.312 6.312 20 C 0.607 3.393 21 F -0.166 7.166 22 F -0.129 7.129 23 F -0.166 7.166 24 C -0.114 4.114 25 C -0.067 4.067 26 C -0.199 4.199 27 H 0.276 0.724 28 H 0.394 0.606 29 H 0.138 0.862 30 H 0.172 0.828 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -21.039 0.015 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.224 4.224 3 Si 0.820 3.180 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.124 0.876 9 N -0.174 5.174 10 C 0.030 3.970 11 C -0.191 4.191 12 N -0.158 5.158 13 C -0.182 4.182 14 C -0.039 4.039 15 C -0.059 4.059 16 C -0.096 4.096 17 C -0.211 4.211 18 C 0.047 3.953 19 O -0.232 6.232 20 C 0.516 3.484 21 F -0.148 7.148 22 F -0.110 7.110 23 F -0.148 7.148 24 C -0.132 4.132 25 C -0.085 4.085 26 C -0.230 4.230 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.156 0.844 30 H 0.189 0.811 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.186 0.814 34 H 0.183 0.817 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.563 -20.727 0.023 20.786 hybrid contribution -1.860 1.212 -0.011 2.220 sum -3.423 -19.515 0.012 19.813 Atomic orbital electron populations 1.69765 1.07323 1.29352 1.50017 1.26141 0.96497 1.02894 0.96903 0.84848 0.78138 0.76461 0.78602 1.19811 1.20608 1.18376 1.20015 0.93436 0.83375 1.48128 0.87586 1.40928 1.07705 1.02071 1.66651 1.18991 0.93460 0.86948 0.97551 1.22013 0.89870 0.96248 1.11009 1.67231 1.41055 0.98594 1.08921 1.22554 0.90985 0.95624 1.09068 1.19390 0.94318 0.91557 0.98611 1.18848 0.93082 0.92192 1.01823 1.21168 0.93988 0.97638 0.96847 1.21500 1.00706 0.92037 1.06824 1.18962 0.93007 0.81330 1.01962 1.86382 1.16407 1.31144 1.89228 1.19294 0.79664 0.74779 0.74667 1.93310 1.89024 1.80917 1.51553 1.93312 1.86773 1.34656 1.96296 1.93312 1.89063 1.80922 1.51523 1.20629 0.89629 0.99960 1.03004 1.21376 1.01588 0.89463 0.96043 1.20960 0.99644 0.90448 1.11938 0.91439 0.77181 0.84422 0.81109 0.84731 0.84299 0.81413 0.81702 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.06 13.05 21.65 0.28 -48.78 16 2 C -0.02 -1.25 5.50 84.87 0.47 -0.78 16 3 Si 1.00 39.93 29.55 68.60 2.03 41.95 16 4 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.32 -16.18 9.57 84.05 0.80 -15.37 16 8 H 0.11 5.15 5.70 -2.91 -0.02 5.14 16 9 N -0.57 -27.60 5.44 -184.06 -1.00 -28.61 16 10 C 0.15 6.66 6.64 38.41 0.25 6.91 16 11 C -0.03 -1.11 10.47 84.93 0.89 -0.22 16 12 N -0.45 -17.98 10.34 -194.25 -2.01 -19.99 16 13 C -0.02 -0.72 10.60 84.98 0.90 0.18 16 14 C -0.04 -1.18 5.89 -19.97 -0.12 -1.30 16 15 C -0.06 -1.54 5.88 -20.03 -0.12 -1.65 16 16 C -0.08 -1.98 9.43 22.46 0.21 -1.76 16 17 C -0.19 -4.31 8.24 22.33 0.18 -4.12 16 18 C 0.09 1.86 6.49 22.55 0.15 2.00 16 19 O -0.31 -6.02 10.37 -92.10 -0.96 -6.97 16 20 C 0.61 10.80 3.42 113.37 0.39 11.19 16 21 F -0.17 -3.08 15.55 44.97 0.70 -2.38 16 22 F -0.13 -2.12 17.53 44.97 0.79 -1.33 16 23 F -0.17 -3.08 15.55 44.97 0.70 -2.38 16 24 C -0.11 -2.04 9.97 22.33 0.22 -1.81 16 25 C -0.07 -1.35 9.43 22.46 0.21 -1.14 16 26 C -0.20 -7.51 9.40 22.84 0.21 -7.30 16 27 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 28 H 0.39 19.45 7.91 -92.71 -0.73 18.72 16 29 H 0.14 6.08 5.96 -2.91 -0.02 6.06 16 30 H 0.17 4.32 6.21 -2.91 -0.02 4.30 16 31 H 0.13 3.34 6.26 -2.91 -0.02 3.33 16 32 H 0.14 2.84 5.08 -2.91 -0.01 2.82 16 33 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.17 2.51 6.22 -2.91 -0.02 2.49 16 35 H 0.13 4.46 6.32 -2.91 -0.02 4.44 16 Total: -1.00 -56.65 315.67 5.66 -50.99 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.47 Total: 32.67 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.66 Total: -15.17 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -2.73 Total: -97.37 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.96 Total: -6.97 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 2.19 Total: -6.10 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.95 kcal Total: -56.65 5.66 -50.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.505 kcal (2) G-P(sol) polarization free energy of solvation -56.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds