Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86794 * 120.00418 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00359 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00232 * 3 2 1 6 6 H 1.48503 * 109.47412 * 149.99926 * 3 2 1 7 7 C 1.38803 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36805 * 119.99767 * 0.27932 * 7 2 1 10 10 C 1.39160 * 119.99792 * 179.72333 * 9 7 2 11 11 C 1.39633 * 120.40897 * 179.71766 * 10 9 7 12 12 C 1.38156 * 118.43814 * 179.73500 * 11 10 9 13 13 C 1.39465 * 119.16552 * 0.51474 * 12 11 10 14 14 C 1.48271 * 119.62420 * 179.76512 * 13 12 11 15 15 C 1.39450 * 120.10087 * 4.98794 * 14 13 12 16 16 C 1.38012 * 119.98219 * 180.02562 * 15 14 13 17 17 C 1.38264 * 120.18430 * 359.97154 * 16 15 14 18 18 C 1.38803 * 120.20239 * 0.02562 * 17 16 15 19 19 O 1.35913 * 119.98773 * 180.02562 * 18 17 16 20 20 C 1.42902 * 117.00099 * 0.02562 * 19 18 17 21 21 F 1.39898 * 109.47329 * 59.99230 * 20 19 18 22 22 F 1.39901 * 109.46748 * 179.97438 * 20 19 18 23 23 F 1.39899 * 109.46938 * 299.99300 * 20 19 18 24 24 C 1.38522 * 120.01836 * 359.76713 * 18 17 16 25 25 N 1.32712 * 120.74754 * 359.75158 * 13 12 11 26 26 C 1.31612 * 121.70457 * 359.97438 * 25 13 12 27 27 H 0.97005 * 119.99697 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00477 * 359.71436 * 9 7 2 29 29 H 1.07999 * 120.77891 * 359.97438 * 11 10 9 30 30 H 1.07992 * 120.41635 * 180.25040 * 12 11 10 31 31 H 1.08004 * 120.01238 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.90180 * 179.97438 * 16 15 14 33 33 H 1.08002 * 119.89491 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.09495 * 180.28088 * 24 18 17 35 35 H 1.08002 * 119.62076 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 2.4974 2.0463 -1.4001 5 1 1.4474 2.6526 0.7001 6 1 3.5475 1.4400 0.7001 7 6 2.0098 -1.2021 -0.0005 8 1 3.0898 -1.2021 -0.0010 9 7 1.3257 -2.3868 -0.0068 10 6 2.0214 -3.5920 -0.0132 11 6 1.3319 -4.8062 -0.0137 12 6 2.0633 -5.9782 -0.0258 13 6 3.4563 -5.9100 -0.0260 14 6 4.2513 -7.1615 -0.0335 15 6 3.6118 -8.3957 -0.1453 16 6 4.3542 -9.5591 -0.1516 17 6 5.7319 -9.5052 -0.0479 18 6 6.3763 -8.2809 0.0637 19 8 7.7309 -8.2330 0.1649 20 6 8.4272 -9.4808 0.1491 21 9 8.1632 -10.1471 -1.0523 22 9 9.8023 -9.2488 0.2610 23 9 7.9978 -10.2679 1.2230 24 6 5.6398 -7.1078 0.0665 25 7 4.0782 -4.7377 -0.0197 26 6 3.4132 -3.6019 -0.0136 27 1 -0.4850 0.8401 0.0004 28 1 0.3557 -2.3868 -0.0068 29 1 0.2521 -4.8285 -0.0088 30 1 1.5627 -6.9350 -0.0306 31 1 2.5358 -8.4411 -0.2269 32 1 3.8575 -10.5142 -0.2378 33 1 6.3083 -10.4185 -0.0537 34 1 6.1403 -6.1543 0.1487 35 1 3.9537 -2.6669 -0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187756.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = -134.290824 kcal Electronic energy + Delta-G solvation = -25613.419333 eV Core-core repulsion = 21161.268875 eV Total energy + Delta-G solvation = -4452.150458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.54540 -48.27517 -48.13138 -40.17272 -39.20223 -37.48609 -35.70876 -32.65123 -31.55290 -31.07015 -30.15748 -27.64713 -26.07752 -25.15863 -23.51604 -22.77776 -21.71576 -21.14844 -19.34822 -19.25117 -19.00222 -18.16393 -17.10522 -16.57235 -16.12451 -15.45371 -15.27389 -15.03046 -14.92941 -14.80887 -14.59373 -14.49963 -14.38844 -14.29292 -14.23734 -13.90048 -13.58431 -13.38685 -13.17173 -13.07376 -12.23419 -12.15417 -12.13515 -11.54258 -11.48548 -11.37572 -10.90740 -10.86141 -10.61738 -10.55433 -9.34530 -8.99468 -8.61808 -8.60464 -8.42823 -6.94513 -6.87937 -4.04434 1.07658 1.45869 1.46401 2.23518 2.42325 2.76112 3.00158 3.01084 3.04590 3.70250 3.75397 3.78814 3.98225 4.60191 4.73061 4.76577 4.88963 5.04007 5.07713 5.26431 5.40186 5.54349 5.66047 5.83907 5.89684 6.12607 6.17691 6.28721 6.45638 6.50279 6.61344 6.71585 6.91631 7.03655 7.14026 7.15997 7.26543 7.69251 8.36384 8.86214 9.00267 9.13883 10.19787 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002395 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.613503 B =11686.397909 C =12714.002523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.304 4.304 8 H 0.111 0.889 9 N -0.522 5.522 10 C 0.155 3.845 11 C -0.215 4.215 12 C -0.076 4.076 13 C -0.020 4.020 14 C 0.055 3.945 15 C -0.150 4.150 16 C -0.076 4.076 17 C -0.218 4.218 18 C 0.102 3.898 19 O -0.310 6.310 20 C 0.603 3.397 21 F -0.167 7.167 22 F -0.136 7.136 23 F -0.167 7.167 24 C -0.117 4.117 25 N -0.420 5.420 26 C 0.006 3.994 27 H 0.282 0.718 28 H 0.403 0.597 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.473 -15.330 0.013 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.434 4.434 8 H 0.129 0.871 9 N -0.118 5.118 10 C 0.026 3.974 11 C -0.244 4.244 12 C -0.097 4.097 13 C -0.155 4.155 14 C 0.054 3.946 15 C -0.169 4.169 16 C -0.094 4.094 17 C -0.238 4.238 18 C 0.060 3.940 19 O -0.230 6.230 20 C 0.512 3.488 21 F -0.150 7.150 22 F -0.118 7.118 23 F -0.150 7.150 24 C -0.136 4.136 25 N -0.128 5.128 26 C -0.167 4.167 27 H 0.092 0.908 28 H 0.238 0.762 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.299 -14.673 0.037 17.372 hybrid contribution -0.945 0.498 -0.016 1.068 sum 8.354 -14.175 0.020 16.454 Atomic orbital electron populations 1.69672 1.06299 1.29573 1.45346 1.25477 0.95833 1.00599 0.96122 0.85701 0.79336 0.79610 0.78989 1.19743 1.20362 1.18743 1.19939 0.93574 0.82465 1.47445 0.87143 1.41168 1.08602 1.02336 1.59737 1.18885 0.93347 0.86465 0.98710 1.20519 0.98822 0.91088 1.14022 1.21386 0.93757 0.97440 0.97146 1.18539 0.89672 0.90027 1.17259 1.18298 0.90974 0.91859 0.93485 1.21197 1.00315 0.91348 1.04040 1.20711 0.92467 0.98330 0.97858 1.21306 0.96758 0.95473 1.10224 1.18630 0.77904 0.95585 1.01837 1.86429 1.20570 1.27065 1.88928 1.19367 0.77068 0.77709 0.74639 1.93287 1.93690 1.81148 1.46830 1.93288 1.28111 1.94476 1.95894 1.93287 1.89660 1.75218 1.56791 1.20462 0.92777 0.96201 1.04175 1.67078 1.40679 0.97679 1.07328 1.21899 0.89603 0.95382 1.09823 0.90785 0.76199 0.86618 0.86578 0.85332 0.85526 0.85749 0.83729 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.29 13.05 55.49 0.72 -20.56 16 2 C 0.03 0.60 5.50 -17.45 -0.10 0.51 16 3 Si 0.94 18.14 29.55 -169.99 -5.02 13.11 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.30 -7.09 9.56 -15.12 -0.14 -7.23 16 8 H 0.11 2.46 5.69 -52.49 -0.30 2.16 16 9 N -0.52 -11.69 5.43 -9.48 -0.05 -11.74 16 10 C 0.15 3.25 6.64 -83.66 -0.56 2.70 16 11 C -0.21 -4.03 10.03 -39.09 -0.39 -4.42 16 12 C -0.08 -1.32 9.44 -39.15 -0.37 -1.69 16 13 C -0.02 -0.38 6.72 -82.90 -0.56 -0.94 16 14 C 0.06 0.91 5.87 -104.92 -0.62 0.30 16 15 C -0.15 -2.04 9.41 -39.21 -0.37 -2.41 16 16 C -0.08 -0.91 10.03 -39.65 -0.40 -1.31 16 17 C -0.22 -2.84 8.25 -39.36 -0.32 -3.16 16 18 C 0.10 1.50 6.48 -39.27 -0.25 1.25 16 19 O -0.31 -4.31 10.37 -19.47 -0.20 -4.51 16 20 C 0.60 6.96 3.42 101.05 0.35 7.31 16 21 F -0.17 -1.88 15.56 2.25 0.04 -1.84 16 22 F -0.14 -1.48 17.53 2.25 0.04 -1.44 16 23 F -0.17 -1.87 15.56 2.25 0.04 -1.84 16 24 C -0.12 -1.91 9.51 -39.08 -0.37 -2.28 16 25 N -0.42 -8.64 9.42 -9.56 -0.09 -8.73 16 26 C 0.01 0.12 10.47 -17.29 -0.18 -0.06 16 27 H 0.28 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.40 9.05 7.91 -40.82 -0.32 8.72 16 29 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.12 1.63 6.21 -52.49 -0.33 1.31 16 31 H 0.13 1.50 6.20 -52.48 -0.33 1.18 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.42 5.08 -52.49 -0.27 1.15 16 34 H 0.14 2.47 7.54 -52.49 -0.40 2.08 16 35 H 0.15 3.03 5.96 -52.49 -0.31 2.72 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -24.69 318.15 -6.25 -30.94 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -2.23 Total: 13.27 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.28 Total: -11.45 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.58 Total: -41.03 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.12 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -24.69 -6.25 -30.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187756.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.349 kcal (2) G-P(sol) polarization free energy of solvation -24.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds