Wall clock time and date at job start Tue Mar 31 2020 14:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.38304 * 111.00211 * 174.15934 * 14 13 12 16 16 N 1.32986 * 120.82033 * 123.92800 * 15 14 13 17 17 C 1.32201 * 121.02347 * 179.72413 * 16 15 14 18 18 Cl 1.73602 * 118.66322 * 180.26525 * 17 16 15 19 19 N 1.31669 * 122.67592 * 0.59697 * 17 16 15 20 20 C 1.33235 * 120.69885 * 359.69167 * 19 17 16 21 21 N 1.36729 * 134.23576 * 180.02562 * 20 19 17 22 22 H 0.97001 * 125.00078 * 359.93535 * 21 20 19 23 23 C 1.37477 * 109.99851 * 179.97438 * 21 20 19 24 24 C 1.34392 * 109.73263 * 0.02562 * 23 21 20 25 25 F 1.35100 * 126.59561 * 179.97438 * 24 23 21 26 26 C 1.40291 * 120.82330 * 304.20921 * 15 14 13 27 27 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 30 30 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 31 31 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 32 32 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 33 33 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 34 34 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 35 35 H 1.07999 * 125.13372 * 180.02562 * 23 21 20 36 36 H 1.09002 * 109.45689 * 301.72551 * 27 14 13 37 37 H 1.08994 * 109.46554 * 181.75633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3749 -6.0067 0.1304 16 7 3.6857 -5.8151 0.2475 17 6 4.5141 -6.8364 0.3827 18 17 6.2132 -6.5156 0.5376 19 7 4.1037 -8.0874 0.3981 20 6 2.8091 -8.3801 0.2818 21 7 2.0923 -9.5443 0.2631 22 1 2.4727 -10.4332 0.3409 23 6 0.7532 -9.2696 0.1169 24 6 0.5686 -7.9408 0.0375 25 9 -0.6110 -7.2989 -0.1101 26 6 1.8903 -7.3232 0.1419 27 6 2.2451 -3.6628 0.0105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3638 -1.7867 -1.2326 30 1 0.9979 -2.4956 -2.1357 31 1 -0.9342 -4.0295 -2.1737 32 1 -0.9948 -4.0193 -0.3941 33 1 1.3431 -4.9950 -2.0977 34 1 0.1921 -6.0293 -1.2185 35 1 -0.0318 -10.0099 0.0725 36 1 2.8821 -3.6002 -0.8717 37 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:43 Heat of formation + Delta-G solvation = 48.002418 kcal Electronic energy + Delta-G solvation = -25384.089345 eV Core-core repulsion = 21523.933147 eV Total energy + Delta-G solvation = -3860.156198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.84948 -42.06244 -39.42884 -38.14224 -36.68449 -34.52218 -32.81991 -31.43323 -31.00919 -29.90901 -28.89902 -25.18326 -24.86761 -23.66837 -22.37288 -21.51772 -21.04962 -19.20632 -18.86947 -17.77011 -17.33408 -16.25152 -16.15356 -15.84021 -15.51017 -15.37145 -14.96598 -14.78511 -14.39239 -14.00417 -13.65429 -13.45418 -13.05533 -12.94203 -12.56804 -12.40176 -11.83191 -11.51521 -11.43675 -11.00118 -10.94239 -10.86362 -10.70545 -10.66427 -10.15568 -9.91530 -9.58261 -9.38174 -9.37091 -9.17745 -8.85678 -8.68719 -8.30564 -7.84962 -5.98846 -4.04608 0.56456 1.12415 1.30115 2.08574 2.42861 3.32634 3.39364 3.42818 3.48765 3.72988 3.92771 4.21787 4.40981 4.45943 4.69851 4.77394 5.06415 5.31487 5.39338 5.53175 5.58635 5.86726 5.96801 6.03454 6.33689 6.36439 6.43542 6.52875 6.55261 6.66606 6.83221 6.90021 7.12615 7.25379 7.32120 7.52803 7.74396 7.97789 7.99622 8.12175 8.43031 8.98692 9.60014 11.07629 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.004402 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.738197 B = 6358.956455 C = 8198.986873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.054 3.946 14 N -0.458 5.458 15 C 0.450 3.550 16 N -0.560 5.560 17 C 0.427 3.573 18 Cl 0.025 6.975 19 N -0.554 5.554 20 C 0.365 3.635 21 N -0.557 5.557 22 H 0.430 0.570 23 C 0.017 3.983 24 C 0.059 3.941 25 F -0.102 7.102 26 C -0.257 4.257 27 C 0.072 3.928 28 H 0.260 0.740 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.194 0.806 36 H 0.046 0.954 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -20.171 -1.480 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.071 4.071 14 N -0.171 5.171 15 C 0.204 3.796 16 N -0.287 5.287 17 C 0.129 3.871 18 Cl 0.053 6.947 19 N -0.281 5.281 20 C 0.125 3.875 21 N -0.166 5.166 22 H 0.270 0.730 23 C -0.108 4.108 24 C 0.031 3.969 25 F -0.080 7.080 26 C -0.270 4.270 27 C -0.052 4.052 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.211 0.789 36 H 0.065 0.935 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.526 -19.901 -1.010 20.086 hybrid contribution 0.249 0.458 -0.415 0.666 sum 2.775 -19.442 -1.424 19.691 Atomic orbital electron populations 1.69880 1.05857 1.26432 1.50605 1.24914 0.94831 0.98992 0.94999 0.86596 0.79941 0.83427 0.78059 1.20744 1.21284 1.19850 1.21073 0.93014 0.90200 1.50827 0.92458 1.18776 0.92553 0.90422 0.95012 0.94636 1.21739 1.00233 0.94637 0.98678 1.21717 0.96786 0.95724 1.01206 1.22597 0.95505 1.02141 0.86832 1.58641 1.20289 1.02817 1.35352 1.19663 0.86415 0.88956 0.84598 1.68152 1.02050 1.34209 1.24286 1.22212 0.89330 0.83504 0.92040 1.98427 1.06087 1.94922 1.95259 1.66613 1.14097 1.21844 1.25581 1.17587 0.87774 0.85808 0.96352 1.41122 1.04737 1.07066 1.63660 0.73037 1.21541 0.84971 0.95572 1.08757 1.16858 0.80320 0.89245 1.10478 1.91449 1.42469 1.80786 1.93337 1.19961 0.94422 0.94154 1.18489 1.22498 0.96193 0.84773 1.01765 0.93012 0.88596 0.94655 0.92341 0.91516 0.93849 0.89477 0.78909 0.93517 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.37 55.43 0.63 -24.31 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.62 5.03 -26.61 -0.13 -2.76 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C 0.05 0.94 5.16 -3.84 -0.02 0.92 16 14 N -0.46 -8.87 4.68 -172.91 -0.81 -9.68 16 15 C 0.45 8.15 6.42 -154.76 -0.99 7.16 16 16 N -0.56 -10.26 8.83 -10.75 -0.09 -10.36 16 17 C 0.43 6.96 8.15 -91.91 -0.75 6.21 16 18 Cl 0.03 0.35 29.25 -51.86 -1.52 -1.17 16 19 N -0.55 -8.32 10.43 -10.95 -0.11 -8.44 16 20 C 0.36 4.98 8.48 -155.86 -1.32 3.66 16 21 N -0.56 -4.93 6.05 -12.02 -0.07 -5.00 16 22 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 23 C 0.02 0.14 11.85 -16.38 -0.19 -0.05 16 24 C 0.06 0.75 7.46 -37.72 -0.28 0.47 16 25 F -0.10 -1.40 14.84 2.25 0.03 -1.36 16 26 C -0.26 -3.97 5.88 -104.96 -0.62 -4.59 16 27 C 0.07 1.58 3.89 -3.83 -0.01 1.56 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 29 H 0.10 2.45 6.18 -51.93 -0.32 2.13 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.38 3.92 -51.93 -0.20 1.18 16 35 H 0.19 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 37 H 0.08 1.76 7.74 -51.93 -0.40 1.36 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -30.26 320.59 -11.01 -41.27 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.79 Total: -0.71 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -5.08 Total: -1.24 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: -0.46 Total: -57.78 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.36 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.26 -11.01 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.275 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds