Wall clock time and date at job start Tue Mar 31 2020 14:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.38304 * 111.00211 * 174.15934 * 14 13 12 16 16 N 1.32986 * 120.82033 * 123.92800 * 15 14 13 17 17 C 1.32201 * 121.02347 * 179.72413 * 16 15 14 18 18 Cl 1.73602 * 118.66322 * 180.26525 * 17 16 15 19 19 N 1.31669 * 122.67592 * 0.59697 * 17 16 15 20 20 C 1.33235 * 120.69885 * 359.69167 * 19 17 16 21 21 N 1.36729 * 134.23576 * 180.02562 * 20 19 17 22 22 H 0.97001 * 125.00078 * 359.93535 * 21 20 19 23 23 C 1.37477 * 109.99851 * 179.97438 * 21 20 19 24 24 C 1.34392 * 109.73263 * 0.02562 * 23 21 20 25 25 F 1.35100 * 126.59561 * 179.97438 * 24 23 21 26 26 C 1.40291 * 120.82330 * 304.20921 * 15 14 13 27 27 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 30 30 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 31 31 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 32 32 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 33 33 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 34 34 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 35 35 H 1.07999 * 125.13372 * 180.02562 * 23 21 20 36 36 H 1.09002 * 109.45689 * 301.72551 * 27 14 13 37 37 H 1.08994 * 109.46554 * 181.75633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3749 -6.0067 0.1304 16 7 3.6857 -5.8151 0.2475 17 6 4.5141 -6.8364 0.3827 18 17 6.2132 -6.5156 0.5376 19 7 4.1037 -8.0874 0.3981 20 6 2.8091 -8.3801 0.2818 21 7 2.0923 -9.5443 0.2631 22 1 2.4727 -10.4332 0.3409 23 6 0.7532 -9.2696 0.1169 24 6 0.5686 -7.9408 0.0375 25 9 -0.6110 -7.2989 -0.1101 26 6 1.8903 -7.3232 0.1419 27 6 2.2451 -3.6628 0.0105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3638 -1.7867 -1.2326 30 1 0.9979 -2.4956 -2.1357 31 1 -0.9342 -4.0295 -2.1737 32 1 -0.9948 -4.0193 -0.3941 33 1 1.3431 -4.9950 -2.0977 34 1 0.1921 -6.0293 -1.2185 35 1 -0.0318 -10.0099 0.0725 36 1 2.8821 -3.6002 -0.8717 37 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740765.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:43 Heat of formation + Delta-G solvation = 29.954743 kcal Electronic energy + Delta-G solvation = -25384.871951 eV Core-core repulsion = 21523.933147 eV Total energy + Delta-G solvation = -3860.938804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.77645 -43.14274 -40.70964 -39.45291 -37.85135 -36.14982 -34.47350 -32.90005 -32.28365 -31.52943 -29.96512 -27.09416 -26.26196 -24.93133 -23.77095 -23.13939 -21.98989 -20.64425 -20.27501 -19.12081 -18.50540 -18.03318 -17.28350 -16.84219 -16.75105 -16.57165 -16.45109 -16.05617 -15.74251 -15.41835 -15.05457 -14.82939 -14.48205 -14.41732 -14.22261 -13.88858 -13.44238 -12.86753 -12.77692 -12.68466 -12.57238 -12.53336 -12.10194 -11.95652 -11.83637 -11.82638 -11.44577 -11.06161 -10.79689 -10.57192 -10.46368 -10.38486 -9.99488 -8.95333 -8.08876 -6.22269 -0.57824 -0.04796 0.16774 1.20199 1.42550 1.43400 1.53547 1.54043 2.19866 2.42754 2.51547 2.97462 3.16393 3.18873 3.35702 3.56757 3.74163 4.02553 4.06507 4.22673 4.34037 4.47684 4.50223 4.59227 4.75720 4.89184 4.94154 5.04389 5.07042 5.17296 5.35880 5.45151 5.50472 5.63123 5.73768 5.92311 6.00022 6.11545 6.30349 6.38447 6.79187 6.87068 7.45343 8.96368 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.004402 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.738197 B = 6358.956455 C = 8198.986873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.052 3.948 10 H 0.000 1.000 11 C -0.106 4.106 12 C -0.107 4.107 13 C 0.059 3.941 14 N -0.469 5.469 15 C 0.421 3.579 16 N -0.586 5.586 17 C 0.405 3.595 18 Cl 0.037 6.963 19 N -0.543 5.543 20 C 0.350 3.650 21 N -0.531 5.531 22 H 0.452 0.548 23 C 0.086 3.914 24 C 0.007 3.993 25 F -0.112 7.112 26 C -0.264 4.264 27 C 0.097 3.903 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.254 0.746 36 H 0.035 0.965 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -23.351 -1.954 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.180 4.180 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.033 3.967 10 H 0.018 0.982 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.065 4.065 14 N -0.184 5.184 15 C 0.176 3.824 16 N -0.313 5.313 17 C 0.107 3.893 18 Cl 0.065 6.935 19 N -0.269 5.269 20 C 0.108 3.892 21 N -0.141 5.141 22 H 0.296 0.704 23 C -0.041 4.041 24 C -0.020 4.020 25 F -0.091 7.091 26 C -0.277 4.277 27 C -0.029 4.029 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.129 0.871 35 H 0.270 0.730 36 H 0.054 0.946 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.072 -23.145 -1.479 23.284 hybrid contribution 0.395 1.240 -0.241 1.323 sum 2.466 -21.905 -1.720 22.110 Atomic orbital electron populations 1.70008 1.07010 1.27204 1.50920 1.25644 0.95668 1.02094 0.94573 0.85625 0.78688 0.79460 0.78299 1.19958 1.20725 1.19639 1.21391 0.92936 0.91821 1.51264 0.93208 1.18666 0.92767 0.90954 0.94333 0.98195 1.21520 0.99272 0.96370 0.97273 1.21601 0.96877 0.93656 1.02290 1.22604 0.94949 1.02564 0.86373 1.58663 1.20872 1.02029 1.36818 1.19711 0.86420 0.89674 0.86555 1.68009 1.02806 1.35708 1.24811 1.22338 0.89797 0.83664 0.93469 1.98417 1.04865 1.94974 1.95269 1.66673 1.14883 1.21000 1.24375 1.17785 0.87169 0.87232 0.96980 1.41268 1.04600 1.06788 1.61479 0.70354 1.22468 0.85174 0.94857 1.01587 1.17083 0.79200 0.90588 1.15108 1.91410 1.42582 1.81236 1.93827 1.20236 0.96719 0.93316 1.17453 1.21958 0.95050 0.85695 1.00238 0.92903 0.91425 0.95254 0.89406 0.92323 0.94061 0.87105 0.72977 0.94648 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.82 11.37 21.45 0.24 -52.58 16 2 C 0.02 1.09 5.31 84.65 0.45 1.54 16 3 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.54 -30.42 8.56 25.60 0.22 -30.20 16 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 9 C 0.05 2.70 2.26 -11.49 -0.03 2.68 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.11 -5.06 5.03 30.67 0.15 -4.90 16 12 C -0.11 -4.03 6.09 30.65 0.19 -3.84 16 13 C 0.06 2.09 5.16 86.33 0.45 2.53 16 14 N -0.47 -18.80 4.68 -700.98 -3.28 -22.08 16 15 C 0.42 15.51 6.42 133.41 0.86 16.37 16 16 N -0.59 -22.13 8.83 -187.92 -1.66 -23.79 16 17 C 0.40 13.24 8.15 180.80 1.47 14.71 16 18 Cl 0.04 1.03 29.25 -2.72 -0.08 0.95 16 19 N -0.54 -15.58 10.43 -188.56 -1.97 -17.55 16 20 C 0.35 8.66 8.48 133.97 1.14 9.80 16 21 N -0.53 -6.77 6.05 -191.95 -1.16 -7.93 16 22 H 0.45 2.18 8.96 -92.71 -0.83 1.35 16 23 C 0.09 0.94 11.85 82.93 0.98 1.92 16 24 C 0.01 0.16 7.46 23.48 0.18 0.34 16 25 F -0.11 -2.81 14.84 44.97 0.67 -2.14 16 26 C -0.26 -7.78 5.88 -20.08 -0.12 -7.90 16 27 C 0.10 4.47 3.89 86.33 0.34 4.80 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.07 3.60 6.18 -2.39 -0.01 3.59 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.78 8.14 -2.38 -0.02 2.77 16 32 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 3.40 3.92 -2.39 -0.01 3.39 16 35 H 0.25 -0.20 8.06 -2.91 -0.02 -0.22 16 36 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 37 H 0.06 2.89 7.74 -2.39 -0.02 2.87 16 Total: -1.00 -70.88 320.59 1.38 -69.50 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 0.31 Total: 1.37 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.27 Total: 7.85 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -7.82 Total: -123.93 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.67 Total: -2.14 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: 1.03 SS G_CDS: -0.08 Total: 0.95 kcal Total: -70.88 1.38 -69.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740765.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.454 kcal (2) G-P(sol) polarization free energy of solvation -70.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds