Wall clock time and date at job start Tue Mar 31 2020 14:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99729 * 2 1 4 4 H 1.48507 * 109.47059 * 240.00123 * 3 2 1 5 5 H 1.48501 * 109.46914 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47161 * 119.99861 * 3 2 1 7 7 C 1.37869 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00165 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.52930 * 59.90115 * 9 7 2 11 11 C 1.53114 * 109.50054 * 299.80166 * 9 7 2 12 12 C 1.53121 * 109.15789 * 182.40091 * 11 9 7 13 13 C 1.53032 * 109.27706 * 57.65822 * 12 11 9 14 14 N 1.46845 * 109.52432 * 300.82199 * 13 12 11 15 15 C 1.38304 * 111.00157 * 185.84211 * 14 13 12 16 16 N 1.32981 * 120.82367 * 235.78877 * 15 14 13 17 17 C 1.32200 * 121.02668 * 180.02562 * 16 15 14 18 18 Cl 1.73606 * 118.66068 * 179.97438 * 17 16 15 19 19 N 1.31664 * 122.67507 * 359.97438 * 17 16 15 20 20 C 1.33232 * 120.70349 * 0.02562 * 19 17 16 21 21 N 1.36738 * 134.23808 * 180.02562 * 20 19 17 22 22 H 0.96992 * 125.00051 * 359.97285 * 21 20 19 23 23 C 1.37475 * 109.99210 * 179.97438 * 21 20 19 24 24 C 1.34384 * 109.73632 * 359.97438 * 23 21 20 25 25 F 1.35102 * 126.59430 * 179.73596 * 24 23 21 26 26 C 1.40295 * 120.82754 * 55.80513 * 15 14 13 27 27 C 1.46842 * 111.20015 * 61.74059 * 14 13 12 28 28 H 0.97000 * 120.00144 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.52753 * 302.30697 * 11 9 7 30 30 H 1.08999 * 109.52058 * 62.50099 * 11 9 7 31 31 H 1.09008 * 109.50098 * 177.59647 * 12 11 9 32 32 H 1.08995 * 109.50272 * 297.67559 * 12 11 9 33 33 H 1.08998 * 109.46288 * 180.79992 * 13 12 11 34 34 H 1.09003 * 109.46521 * 60.83456 * 13 12 11 35 35 H 1.07996 * 125.13272 * 179.97438 * 23 21 20 36 36 H 1.08997 * 109.46265 * 58.27952 * 27 14 13 37 37 H 1.09008 * 109.46208 * 178.25532 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6232 -2.5574 -0.8884 11 6 0.3739 -2.5829 1.2526 12 6 -0.3417 -3.9365 1.2752 13 6 0.6983 -5.0585 1.2389 14 7 1.5115 -4.9347 0.0225 15 6 2.3750 -6.0072 -0.1078 16 7 3.6852 -5.8161 -0.2308 17 6 4.5142 -6.8382 -0.3561 18 17 6.2132 -6.5180 -0.5134 19 7 4.1037 -8.0892 -0.3664 20 6 2.8091 -8.3813 -0.2490 21 7 2.0922 -9.5455 -0.2247 22 1 2.4725 -10.4346 -0.2991 23 6 0.7532 -9.2700 -0.0794 24 6 0.5687 -7.9409 -0.0061 25 9 -0.6114 -7.2981 0.1335 26 6 1.8904 -7.3238 -0.1137 27 6 2.2451 -3.6628 0.0012 28 1 -0.4850 0.8400 -0.0004 29 1 0.9973 -2.4856 2.1415 30 1 -0.3641 -1.7810 1.2346 31 1 -0.9348 -4.0194 2.1860 32 1 -0.9953 -4.0170 0.4067 33 1 0.1916 -6.0235 1.2405 34 1 1.3424 -4.9852 2.1152 35 1 -0.0319 -10.0100 -0.0313 36 1 2.8819 -3.5961 0.8833 37 1 2.8617 -3.6142 -0.8964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:46 Heat of formation + Delta-G solvation = 48.065996 kcal Electronic energy + Delta-G solvation = -25384.107342 eV Core-core repulsion = 21523.953901 eV Total energy + Delta-G solvation = -3860.153441 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.085 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.84670 -42.06257 -39.42894 -38.14315 -36.68471 -34.52242 -32.81965 -31.43242 -31.00922 -29.90807 -28.89903 -25.18210 -24.86735 -23.66794 -22.37210 -21.51709 -21.04936 -19.20511 -18.86943 -17.77052 -17.33226 -16.25111 -16.15046 -15.83937 -15.50999 -15.37084 -14.96519 -14.78237 -14.39708 -14.00343 -13.65581 -13.45430 -13.05470 -12.94084 -12.56329 -12.40237 -11.83044 -11.51663 -11.43678 -11.00212 -10.93216 -10.85197 -10.72073 -10.66710 -10.16923 -9.91335 -9.57838 -9.38025 -9.37204 -9.17706 -8.85719 -8.69319 -8.30051 -7.84815 -5.98571 -4.04454 0.56539 1.12446 1.30121 2.08610 2.42909 3.34620 3.38757 3.41373 3.48589 3.72986 3.92910 4.21843 4.41038 4.45991 4.69889 4.77444 5.06467 5.31582 5.39356 5.53150 5.58661 5.86665 5.96842 6.03460 6.33696 6.36424 6.43559 6.52933 6.55290 6.66650 6.83242 6.90041 7.12692 7.25434 7.32178 7.52827 7.74266 7.97888 7.99692 8.12350 8.43099 8.98545 9.60078 11.07813 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013823 B = 0.004402 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.194553 B = 6359.147496 C = 8199.328867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.052 3.948 10 H 0.035 0.965 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.054 3.946 14 N -0.458 5.458 15 C 0.450 3.550 16 N -0.560 5.560 17 C 0.427 3.573 18 Cl 0.025 6.975 19 N -0.554 5.554 20 C 0.365 3.635 21 N -0.557 5.557 22 H 0.430 0.570 23 C 0.017 3.983 24 C 0.059 3.941 25 F -0.102 7.102 26 C -0.257 4.257 27 C 0.072 3.928 28 H 0.261 0.739 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.194 0.806 36 H 0.046 0.954 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -20.144 1.584 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.033 3.967 10 H 0.054 0.946 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.071 4.071 14 N -0.171 5.171 15 C 0.204 3.796 16 N -0.287 5.287 17 C 0.129 3.871 18 Cl 0.053 6.947 19 N -0.282 5.282 20 C 0.125 3.875 21 N -0.166 5.166 22 H 0.270 0.730 23 C -0.108 4.108 24 C 0.031 3.969 25 F -0.080 7.080 26 C -0.270 4.270 27 C -0.052 4.052 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.211 0.789 36 H 0.065 0.935 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.506 -19.873 1.111 20.061 hybrid contribution 0.263 0.454 0.412 0.667 sum 2.769 -19.418 1.523 19.674 Atomic orbital electron populations 1.69872 1.05851 1.26542 1.50516 1.24912 0.94833 0.98979 0.94986 0.86653 0.79583 0.83071 0.78668 1.20241 1.21355 1.20295 1.21036 0.92976 0.90213 1.50963 0.92513 1.18770 0.92543 0.90409 0.95006 0.94646 1.21741 1.00247 0.94650 0.98669 1.21715 0.96782 0.95725 1.01211 1.22591 0.95496 1.02141 0.86826 1.58636 1.20267 1.02840 1.35343 1.19665 0.86419 0.88987 0.84555 1.68141 1.02054 1.34177 1.24336 1.22208 0.89325 0.83488 0.92054 1.98427 1.06094 1.94937 1.95236 1.66607 1.14107 1.21875 1.25562 1.17585 0.87773 0.85804 0.96350 1.41122 1.04746 1.07045 1.63678 0.73039 1.21537 0.84976 0.95563 1.08764 1.16859 0.80310 0.89230 1.10506 1.91451 1.42416 1.80741 1.93439 1.19960 0.94427 0.94147 1.18505 1.22498 0.96198 0.84772 1.01765 0.92954 0.94659 0.88572 0.92344 0.91516 0.89491 0.93845 0.78912 0.93521 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.94 11.36 55.43 0.63 -24.31 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.22 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.05 1.27 2.26 -91.69 -0.21 1.07 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.12 -2.63 5.03 -26.61 -0.13 -2.76 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C 0.05 0.95 5.16 -3.84 -0.02 0.93 16 14 N -0.46 -8.87 4.68 -172.92 -0.81 -9.68 16 15 C 0.45 8.15 6.42 -154.76 -0.99 7.16 16 16 N -0.56 -10.26 8.82 -10.75 -0.09 -10.36 16 17 C 0.43 6.96 8.15 -91.92 -0.75 6.21 16 18 Cl 0.03 0.35 29.25 -51.86 -1.52 -1.17 16 19 N -0.55 -8.33 10.43 -10.95 -0.11 -8.44 16 20 C 0.37 4.98 8.48 -155.86 -1.32 3.66 16 21 N -0.56 -4.93 6.05 -12.03 -0.07 -5.00 16 22 H 0.43 2.27 8.96 -40.82 -0.37 1.91 16 23 C 0.02 0.14 11.85 -16.38 -0.19 -0.05 16 24 C 0.06 0.75 7.45 -37.72 -0.28 0.47 16 25 F -0.10 -1.40 14.85 2.25 0.03 -1.37 16 26 C -0.26 -3.97 5.88 -104.96 -0.62 -4.59 16 27 C 0.07 1.58 3.90 -3.84 -0.01 1.56 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 31 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.38 3.93 -51.93 -0.20 1.18 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.19 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 37 H 0.08 1.76 7.73 -51.92 -0.40 1.36 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -30.23 320.58 -11.01 -41.24 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.79 Total: -0.67 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -5.08 Total: -1.25 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: -0.46 Total: -57.79 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.03 Total: -1.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.23 -11.01 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.308 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds