Wall clock time and date at job start Tue Mar 31 2020 13:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34886 * 117.00352 * 2 1 4 4 O 1.21612 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.46643 * 120.00046 * 179.97438 * 3 2 1 6 6 C 1.36258 * 125.50765 * 179.97438 * 5 3 2 7 7 C 1.40881 * 107.56667 * 180.02562 * 6 5 3 8 8 C 1.41132 * 107.19226 * 359.97438 * 7 6 5 9 9 N 1.33094 * 118.66602 * 180.02562 * 8 7 6 10 10 C 1.31784 * 120.78364 * 0.02562 * 9 8 7 11 11 Cl 1.73596 * 118.64235 * 179.97438 * 10 9 8 12 12 N 1.32097 * 122.71582 * 359.97438 * 10 9 8 13 13 C 1.33003 * 121.11131 * 0.02562 * 12 10 9 14 14 N 1.37939 * 120.82056 * 179.97438 * 13 12 10 15 15 C 1.46501 * 119.99910 * 6.62212 * 14 13 12 16 16 C 1.36841 * 119.99940 * 186.62669 * 14 13 12 17 17 H 1.07997 * 120.00333 * 40.70027 * 16 14 13 18 18 C 1.38912 * 119.99917 * 220.70515 * 16 14 13 19 19 N 1.31482 * 119.99585 * 8.53138 * 18 16 14 20 20 Si 1.86801 * 120.00021 * 188.52961 * 18 16 14 21 21 H 1.48491 * 109.47123 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46809 * 120.00101 * 20 18 16 23 23 H 1.48495 * 109.46965 * 239.99713 * 20 18 16 24 24 N 1.36605 * 107.39851 * 0.02562 * 8 7 6 25 25 C 1.46494 * 125.57135 * 179.73494 * 24 8 7 26 26 H 1.09004 * 109.46486 * 59.99999 * 1 2 3 27 27 H 1.08997 * 109.47483 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47234 * 300.00927 * 1 2 3 29 29 H 1.07992 * 126.21617 * 0.03699 * 6 5 3 30 30 H 1.08997 * 109.46971 * 84.78579 * 15 14 13 31 31 H 1.08995 * 109.46815 * 204.78836 * 15 14 13 32 32 H 1.08997 * 109.47009 * 324.78783 * 15 14 13 33 33 H 0.97006 * 120.00067 * 180.02562 * 19 18 16 34 34 H 1.09001 * 109.47584 * 90.00028 * 25 24 8 35 35 H 1.09003 * 109.47150 * 209.99936 * 25 24 8 36 36 H 1.09006 * 109.47273 * 329.99549 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2018 0.0000 4 8 1.4022 2.2217 -0.0005 5 6 3.5289 1.2785 0.0006 6 6 4.2612 2.4275 0.0001 7 6 5.6224 2.0642 0.0003 8 6 5.6778 0.6540 0.0015 9 7 6.8697 0.0618 0.0025 10 6 7.9775 0.7757 0.0028 11 17 9.5022 -0.0542 0.0047 12 7 7.9756 2.0967 0.0017 13 6 6.8359 2.7823 0.0008 14 7 6.8409 4.1616 0.0002 15 6 8.1039 4.8895 -0.1457 16 6 5.6661 4.8502 0.1360 17 1 4.9181 4.5091 0.8363 18 6 5.4356 5.9877 -0.6272 19 7 6.2652 6.3090 -1.5953 20 14 3.9471 7.0610 -0.2779 21 1 3.1772 6.4862 0.8542 22 1 4.3969 8.4314 0.0751 23 1 3.0844 7.1188 -1.4852 24 7 4.3912 0.1947 0.0014 25 6 3.9893 -1.2140 -0.0031 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8898 29 1 3.8694 3.4339 -0.0001 30 1 8.3458 4.9889 -1.2038 31 1 8.0060 5.8796 0.2994 32 1 8.8995 4.3413 0.3589 33 1 6.1045 7.1036 -2.1281 34 1 3.8908 -1.5671 1.0234 35 1 3.0332 -1.3174 -0.5162 36 1 4.7448 -1.8058 -0.5200 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:56 Heat of formation + Delta-G solvation = 1.541167 kcal Electronic energy + Delta-G solvation = -25349.205319 eV Core-core repulsion = 21474.661620 eV Total energy + Delta-G solvation = -3874.543699 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.93054 -41.26565 -39.68140 -38.46899 -37.55478 -37.39854 -34.63404 -33.74307 -32.94686 -30.69386 -29.03754 -28.59978 -27.39398 -26.53900 -24.97906 -23.36956 -22.78205 -21.11008 -20.01571 -19.43506 -18.55306 -18.07795 -17.60394 -17.47930 -16.91399 -16.66907 -16.21230 -15.93424 -15.68266 -15.45886 -14.83324 -14.76126 -14.72312 -14.39971 -14.28883 -13.49000 -13.28996 -13.26231 -13.07138 -12.86308 -12.78356 -12.58226 -12.33382 -12.30033 -12.10374 -11.90230 -11.82601 -11.74241 -11.69694 -11.08750 -10.02269 -9.99098 -9.76526 -8.74324 -8.43487 -6.22796 -0.38704 0.46437 0.64188 0.80686 1.39547 1.42085 1.44481 1.55222 1.76216 2.03809 2.11119 2.64451 2.73353 3.09583 3.52396 3.63434 3.89449 4.06335 4.17040 4.34176 4.38143 4.48930 4.53915 4.61134 4.70457 4.74064 4.84112 4.86613 5.04497 5.14570 5.16249 5.23963 5.29141 5.77910 5.87728 5.93687 6.21154 6.51297 6.64390 6.96251 7.13933 7.56512 8.44667 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.007822 B = 0.007305 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3578.581684 B = 3832.297688 C = 7284.445022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.550 3.450 4 O -0.527 6.527 5 C -0.048 4.048 6 C -0.034 4.034 7 C -0.284 4.284 8 C 0.362 3.638 9 N -0.610 5.610 10 C 0.440 3.560 11 Cl 0.024 6.976 12 N -0.627 5.627 13 C 0.423 3.577 14 N -0.378 5.378 15 C 0.121 3.879 16 C -0.340 4.340 17 H 0.106 0.894 18 C 0.018 3.982 19 N -0.870 5.870 20 Si 0.984 3.016 21 H -0.257 1.257 22 H -0.264 1.264 23 H -0.276 1.276 24 N -0.432 5.432 25 C 0.078 3.922 26 H 0.062 0.938 27 H 0.141 0.859 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.283 0.717 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -10.493 2.606 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.396 3.604 4 O -0.417 6.417 5 C -0.153 4.153 6 C -0.061 4.061 7 C -0.298 4.298 8 C 0.122 3.878 9 N -0.348 5.348 10 C 0.140 3.860 11 Cl 0.052 6.948 12 N -0.366 5.366 13 C 0.171 3.829 14 N -0.062 5.062 15 C -0.021 4.021 16 C -0.469 4.469 17 H 0.123 0.877 18 C -0.190 4.190 19 N -0.503 5.503 20 Si 0.806 3.194 21 H -0.180 1.180 22 H -0.189 1.189 23 H -0.201 1.201 24 N -0.119 5.119 25 C -0.061 4.061 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.082 0.918 29 H 0.175 0.825 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.946 -10.534 2.443 12.340 hybrid contribution -0.972 1.108 -0.140 1.481 sum -6.918 -9.425 2.303 11.916 Atomic orbital electron populations 1.23646 0.73880 1.06137 1.02753 1.86592 1.25611 1.30535 1.84273 1.19486 0.86030 0.82208 0.72630 1.90886 1.65601 1.36850 1.48362 1.18835 0.87074 0.86702 1.22678 1.21154 0.90522 0.97768 0.96654 1.18740 0.94445 0.94607 1.21989 1.17884 0.85841 0.88098 0.95929 1.66514 0.94752 1.39908 1.33654 1.22052 0.87537 0.85011 0.91383 1.98352 1.23828 1.76385 1.96223 1.67254 1.28468 1.07618 1.33236 1.18346 0.86744 0.85935 0.91834 1.42671 1.08410 0.99707 1.55460 1.21483 0.84269 0.95479 1.00914 1.20089 0.96461 1.08182 1.22191 0.87706 1.26377 1.00848 0.98719 0.93045 1.70019 1.37602 1.25678 1.16960 0.84988 0.77243 0.78092 0.79101 1.18038 1.18865 1.20128 1.43674 1.00852 1.07593 1.59824 1.22366 1.03186 0.75798 1.04710 0.91903 0.84132 0.91795 0.82527 0.93505 0.91824 0.91617 0.90690 0.89609 0.87186 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -8.68 7.89 -58.00 -0.46 -9.13 16 3 C 0.55 18.30 7.92 70.02 0.55 18.85 16 4 O -0.53 -20.00 16.64 19.47 0.32 -19.68 16 5 C -0.05 -1.80 6.82 39.82 0.27 -1.53 16 6 C -0.03 -1.46 8.99 22.46 0.20 -1.26 16 7 C -0.28 -13.15 5.86 -21.25 -0.12 -13.28 16 8 C 0.36 15.22 7.95 134.15 1.07 16.29 16 9 N -0.61 -25.38 10.42 -188.43 -1.96 -27.34 16 10 C 0.44 18.42 8.15 180.80 1.47 19.90 16 11 Cl 0.02 0.81 29.25 -2.72 -0.08 0.73 16 12 N -0.63 -28.79 9.26 -187.61 -1.74 -30.53 16 13 C 0.42 20.48 7.38 133.70 0.99 21.46 16 14 N -0.38 -18.51 3.00 -539.92 -1.62 -20.13 16 15 C 0.12 5.44 8.85 127.77 1.13 6.57 16 16 C -0.34 -16.57 7.29 84.07 0.61 -15.95 16 17 H 0.11 5.05 5.73 -2.91 -0.02 5.04 16 18 C 0.02 0.87 5.15 84.91 0.44 1.30 16 19 N -0.87 -43.04 11.75 21.66 0.25 -42.79 16 20 Si 0.98 37.94 29.56 68.60 2.03 39.97 16 21 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 24 N -0.43 -15.26 3.21 -532.12 -1.71 -16.96 16 25 C 0.08 1.92 10.55 127.77 1.35 3.26 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 27 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.16 7.08 5.74 -2.91 -0.02 7.06 16 30 H 0.05 2.22 7.72 -2.39 -0.02 2.20 16 31 H 0.06 2.79 7.72 -2.39 -0.02 2.78 16 32 H 0.07 2.74 7.48 -2.39 -0.02 2.72 16 33 H 0.28 13.05 8.31 -92.70 -0.77 12.28 16 34 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.11 2.27 6.07 -2.39 -0.01 2.25 16 36 H 0.09 2.13 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -60.47 327.25 5.35 -55.12 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.15 Total: 13.45 kcal Atomic # 6 Polarization: 48.12 SS G_CDS: 9.16 Total: 57.28 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -6.77 Total: -137.75 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.13 Total: -28.81 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.73 kcal Total: -60.47 5.35 -55.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -60.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds