Wall clock time and date at job start Tue Mar 31 2020 13:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43208 * 119.99867 * 16.25816 * 3 2 1 5 5 N 3.51043 * 140.68607 * 16.25884 * 2 1 3 6 6 C 1.40712 * 120.00149 * 195.98352 * 3 2 1 7 7 C 1.39457 * 119.99858 * 354.74622 * 6 3 2 8 8 H 1.08000 * 119.99639 * 333.00365 * 7 6 3 9 9 C 1.46106 * 120.00073 * 153.00492 * 7 6 3 10 10 N 1.29790 * 119.99928 * 3.20067 * 9 7 6 11 11 Si 1.86803 * 120.00072 * 183.20371 * 9 7 6 12 12 H 1.48497 * 109.46993 * 89.99707 * 11 9 7 13 13 H 1.48494 * 109.47027 * 209.99724 * 11 9 7 14 14 H 1.48498 * 109.47125 * 329.99660 * 11 9 7 15 15 N 1.38327 * 120.00162 * 174.74845 * 6 3 2 16 16 C 1.39148 * 120.00288 * 120.28658 * 15 6 3 17 17 C 1.39495 * 119.29888 * 353.95651 * 16 15 6 18 18 C 1.36928 * 119.49723 * 179.97438 * 17 16 15 19 19 C 1.39875 * 118.25737 * 0.02562 * 18 17 16 20 20 C 1.46433 * 134.19270 * 179.97438 * 19 18 17 21 21 N 1.48029 * 126.56521 * 0.04781 * 20 19 18 22 22 O 1.31705 * 119.99658 * 179.97438 * 21 20 19 23 23 O 1.31700 * 120.00192 * 359.97438 * 21 20 19 24 24 C 1.34205 * 106.87051 * 180.02562 * 20 19 18 25 25 N 1.37029 * 109.87139 * 0.02562 * 24 20 19 26 26 H 0.97003 * 125.00209 * 180.02562 * 25 24 20 27 27 C 1.37378 * 110.00211 * 359.97438 * 25 24 20 28 28 N 1.32139 * 119.30175 * 173.68831 * 16 15 6 29 29 H 0.97002 * 119.99701 * 185.01110 * 10 9 7 30 30 H 0.97002 * 119.99803 * 300.28667 * 15 6 3 31 31 H 1.08001 * 120.25571 * 359.95819 * 17 16 15 32 32 H 1.07997 * 120.87148 * 180.02562 * 18 17 16 33 33 H 1.08000 * 125.06568 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2845 -1.1897 -0.3472 5 7 3.8519 -2.1352 -0.6227 6 6 3.2710 1.1724 0.3356 7 6 2.5776 2.3612 0.5611 8 1 1.6226 2.5279 0.0850 9 6 3.1429 3.3810 1.4415 10 7 4.3182 3.2078 1.9643 11 14 2.1743 4.9340 1.8147 12 1 1.3331 4.7154 3.0187 13 1 3.1146 6.0557 2.0648 14 1 1.3051 5.2654 0.6572 15 7 4.6499 1.1453 0.4416 16 6 5.4267 1.9625 -0.3738 17 6 4.8102 2.7083 -1.3785 18 6 5.5707 3.5142 -2.1830 19 6 6.9513 3.5569 -1.9623 20 6 8.0638 4.2720 -2.5908 21 7 7.9753 5.2173 -3.7265 22 8 9.0654 5.7915 -4.1919 23 8 6.8064 5.4842 -4.2716 24 6 9.1791 3.9067 -1.9398 25 7 8.8678 3.0155 -0.9466 26 1 9.5087 2.6107 -0.3413 27 6 7.5144 2.7804 -0.9333 28 7 6.7321 2.0196 -0.1765 29 1 4.6631 3.8490 2.6052 30 1 5.0754 0.5565 1.0845 31 1 3.7412 2.6504 -1.5211 32 1 5.1165 4.1015 -2.9673 33 1 10.1738 4.2616 -2.1656 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:02 Heat of formation + Delta-G solvation = 160.698164 kcal Electronic energy + Delta-G solvation = -25612.167246 eV Core-core repulsion = 21643.417619 eV Total energy + Delta-G solvation = -3968.749627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.91386 -39.12663 -38.32390 -36.76867 -35.22738 -34.83282 -34.16637 -33.66230 -32.99249 -30.89416 -30.55765 -28.19184 -27.15144 -26.25133 -23.57495 -22.94249 -21.26439 -20.91445 -19.36933 -18.60035 -17.99767 -17.55219 -17.20491 -16.84993 -16.46428 -16.17136 -15.99886 -15.28407 -14.93248 -14.53522 -14.02623 -13.85134 -13.08336 -12.93562 -12.80463 -12.65504 -12.45522 -12.31067 -11.99643 -11.81240 -11.70152 -11.63290 -11.18897 -11.16010 -11.05172 -10.99334 -10.82046 -10.63552 -10.52044 -10.18493 -9.84600 -9.37874 -8.69703 -8.39909 -7.94432 -7.13191 -5.62105 -0.39011 1.13865 1.21802 1.51699 2.00794 2.31929 2.32638 2.59149 2.66404 2.74727 3.26326 3.54003 3.74754 3.92173 3.97463 4.10865 4.14773 4.21581 4.42277 4.61804 4.97043 4.99418 5.06970 5.28035 5.47941 5.54905 5.83869 5.90332 6.10651 6.17083 6.26209 6.39133 6.62998 6.74830 6.88406 6.99608 7.05350 7.42217 7.47564 7.82656 8.01714 8.48296 8.82832 8.96401 9.01105 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.004345 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.825763 B = 6443.239900 C = 7340.453739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.324 3.676 3 C -0.301 4.301 4 C 0.306 3.694 5 N -0.528 5.528 6 C 0.366 3.634 7 C -0.379 4.379 8 H 0.118 0.882 9 C 0.066 3.934 10 N -0.710 5.710 11 Si 0.931 3.069 12 H -0.255 1.255 13 H -0.267 1.267 14 H -0.244 1.244 15 N -0.628 5.628 16 C 0.497 3.503 17 C -0.203 4.203 18 C 0.001 3.999 19 C -0.186 4.186 20 C -0.068 4.068 21 N 0.029 4.971 22 O -0.215 6.215 23 O -0.183 6.183 24 C 0.163 3.837 25 N -0.550 5.550 26 H 0.433 0.567 27 C 0.341 3.659 28 N -0.554 5.554 29 H 0.305 0.695 30 H 0.407 0.593 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 7.725 0.997 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C 0.016 3.984 3 C -0.319 4.319 4 C -0.001 4.001 5 N -0.210 5.210 6 C 0.263 3.737 7 C -0.406 4.406 8 H 0.136 0.864 9 C -0.168 4.168 10 N -0.327 5.327 11 Si 0.752 3.248 12 H -0.179 1.179 13 H -0.192 1.192 14 H -0.167 1.167 15 N -0.250 5.250 16 C 0.253 3.747 17 C -0.227 4.227 18 C -0.025 4.025 19 C -0.195 4.195 20 C -0.167 4.167 21 N 0.498 4.502 22 O -0.396 6.396 23 O -0.373 6.373 24 C 0.026 3.974 25 N -0.159 5.159 26 H 0.274 0.726 27 C 0.108 3.892 28 N -0.279 5.279 29 H 0.118 0.882 30 H 0.244 0.756 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.144 5.479 1.808 11.671 hybrid contribution 0.282 1.377 0.180 1.417 sum 10.426 6.857 1.988 12.636 Atomic orbital electron populations 1.81078 1.12164 1.09543 1.18007 1.24614 0.91224 0.92039 0.90569 1.12780 0.83120 0.90663 1.45328 1.25233 0.92523 0.91826 0.90547 1.81111 1.09752 1.11610 1.18531 1.16687 0.79352 0.90986 0.86637 1.21563 1.03940 0.97125 1.18006 0.86414 1.27822 0.94450 1.00410 0.94124 1.69181 1.14058 1.34364 1.15090 0.85817 0.80130 0.77423 0.81435 1.17943 1.19161 1.16672 1.41413 1.03853 1.41144 1.38589 1.17525 0.85016 0.85853 0.86306 1.21525 1.02898 1.00673 0.97584 1.20635 0.90026 0.94907 0.96946 1.18902 0.93883 1.05051 1.01651 1.20059 0.96043 1.04286 0.96313 1.49425 1.02417 0.98523 0.99855 1.96249 1.21442 1.54327 1.67598 1.96269 1.10298 1.69079 1.61656 1.21541 0.98960 0.89784 0.87085 1.41625 1.06619 1.37950 1.29718 0.72603 1.17548 0.83943 0.94878 0.92863 1.65712 1.04546 1.27058 1.30560 0.88175 0.75575 0.82433 0.83550 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -11.67 18.54 41.83 0.78 -10.89 16 2 C 0.32 6.82 14.03 -22.48 -0.32 6.50 16 3 C -0.30 -5.97 5.87 -105.11 -0.62 -6.59 16 4 C 0.31 6.45 14.81 -22.45 -0.33 6.12 16 5 N -0.53 -11.79 18.54 41.86 0.78 -11.01 16 6 C 0.37 6.75 4.97 -83.54 -0.42 6.33 16 7 C -0.38 -6.78 6.74 -35.97 -0.24 -7.02 16 8 H 0.12 2.11 7.34 -52.49 -0.39 1.73 16 9 C 0.07 1.12 5.36 -15.26 -0.08 1.03 16 10 N -0.71 -12.15 11.04 55.96 0.62 -11.53 16 11 Si 0.93 13.54 29.65 -169.99 -5.04 8.50 16 12 H -0.26 -3.80 7.11 56.52 0.40 -3.40 16 13 H -0.27 -3.90 7.11 56.52 0.40 -3.50 16 14 H -0.24 -3.59 7.11 56.52 0.40 -3.19 16 15 N -0.63 -11.02 3.38 -9.70 -0.03 -11.05 16 16 C 0.50 8.52 6.19 -154.96 -0.96 7.56 16 17 C -0.20 -3.32 8.70 -39.59 -0.34 -3.67 16 18 C 0.00 0.01 9.92 -39.44 -0.39 -0.38 16 19 C -0.19 -2.82 6.28 -105.07 -0.66 -3.48 16 20 C -0.07 -0.92 7.38 -78.06 -0.58 -1.50 16 21 N 0.03 0.46 4.99 34.87 0.17 0.64 16 22 O -0.21 -3.36 19.77 -31.57 -0.62 -3.98 16 23 O -0.18 -3.17 18.95 -31.57 -0.60 -3.76 16 24 C 0.16 1.51 11.55 -16.65 -0.19 1.31 16 25 N -0.55 -5.24 6.06 -12.13 -0.07 -5.32 16 26 H 0.43 2.63 8.96 -40.82 -0.37 2.26 16 27 C 0.34 4.89 8.42 -155.66 -1.31 3.57 16 28 N -0.55 -9.05 10.43 -11.43 -0.12 -9.17 16 29 H 0.31 4.82 8.28 -40.82 -0.34 4.49 16 30 H 0.41 7.09 8.94 -40.82 -0.36 6.73 16 31 H 0.16 2.54 6.08 -52.49 -0.32 2.22 16 32 H 0.15 2.08 7.38 -52.49 -0.39 1.69 16 33 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -26.24 327.93 -7.02 -33.26 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -1.38 Total: 9.59 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: -6.44 Total: 9.80 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 2.12 Total: -58.34 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.22 Total: -7.75 kcal Atomic # 14 Polarization: 13.54 SS G_CDS: -5.04 Total: 8.50 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.24 -7.02 -33.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.955 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds