Wall clock time and date at job start Tue Mar 31 2020 13:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.43208 * 119.99867 * 16.25816 * 3 2 1 5 5 N 3.51043 * 140.68607 * 16.25884 * 2 1 3 6 6 C 1.40712 * 120.00149 * 195.98352 * 3 2 1 7 7 C 1.39457 * 119.99858 * 354.74622 * 6 3 2 8 8 H 1.08000 * 119.99639 * 333.00365 * 7 6 3 9 9 C 1.46106 * 120.00073 * 153.00492 * 7 6 3 10 10 N 1.29790 * 119.99928 * 3.20067 * 9 7 6 11 11 Si 1.86803 * 120.00072 * 183.20371 * 9 7 6 12 12 H 1.48497 * 109.46993 * 89.99707 * 11 9 7 13 13 H 1.48494 * 109.47027 * 209.99724 * 11 9 7 14 14 H 1.48498 * 109.47125 * 329.99660 * 11 9 7 15 15 N 1.38327 * 120.00162 * 174.74845 * 6 3 2 16 16 C 1.39148 * 120.00288 * 120.28658 * 15 6 3 17 17 C 1.39495 * 119.29888 * 353.95651 * 16 15 6 18 18 C 1.36928 * 119.49723 * 179.97438 * 17 16 15 19 19 C 1.39875 * 118.25737 * 0.02562 * 18 17 16 20 20 C 1.46433 * 134.19270 * 179.97438 * 19 18 17 21 21 N 1.48029 * 126.56521 * 0.04781 * 20 19 18 22 22 O 1.31705 * 119.99658 * 179.97438 * 21 20 19 23 23 O 1.31700 * 120.00192 * 359.97438 * 21 20 19 24 24 C 1.34205 * 106.87051 * 180.02562 * 20 19 18 25 25 N 1.37029 * 109.87139 * 0.02562 * 24 20 19 26 26 H 0.97003 * 125.00209 * 180.02562 * 25 24 20 27 27 C 1.37378 * 110.00211 * 359.97438 * 25 24 20 28 28 N 1.32139 * 119.30175 * 173.68831 * 16 15 6 29 29 H 0.97002 * 119.99701 * 185.01110 * 10 9 7 30 30 H 0.97002 * 119.99803 * 300.28667 * 15 6 3 31 31 H 1.08001 * 120.25571 * 359.95819 * 17 16 15 32 32 H 1.07997 * 120.87148 * 180.02562 * 18 17 16 33 33 H 1.08000 * 125.06568 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2845 -1.1897 -0.3472 5 7 3.8519 -2.1352 -0.6227 6 6 3.2710 1.1724 0.3356 7 6 2.5776 2.3612 0.5611 8 1 1.6226 2.5279 0.0850 9 6 3.1429 3.3810 1.4415 10 7 4.3182 3.2078 1.9643 11 14 2.1743 4.9340 1.8147 12 1 1.3331 4.7154 3.0187 13 1 3.1146 6.0557 2.0648 14 1 1.3051 5.2654 0.6572 15 7 4.6499 1.1453 0.4416 16 6 5.4267 1.9625 -0.3738 17 6 4.8102 2.7083 -1.3785 18 6 5.5707 3.5142 -2.1830 19 6 6.9513 3.5569 -1.9623 20 6 8.0638 4.2720 -2.5908 21 7 7.9753 5.2173 -3.7265 22 8 9.0654 5.7915 -4.1919 23 8 6.8064 5.4842 -4.2716 24 6 9.1791 3.9067 -1.9398 25 7 8.8678 3.0155 -0.9466 26 1 9.5087 2.6107 -0.3413 27 6 7.5144 2.7804 -0.9333 28 7 6.7321 2.0196 -0.1765 29 1 4.6631 3.8490 2.6052 30 1 5.0754 0.5565 1.0845 31 1 3.7412 2.6504 -1.5211 32 1 5.1165 4.1015 -2.9673 33 1 10.1738 4.2616 -2.1656 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:02 Heat of formation + Delta-G solvation = 147.319891 kcal Electronic energy + Delta-G solvation = -25612.747372 eV Core-core repulsion = 21643.417619 eV Total energy + Delta-G solvation = -3969.329753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.99184 -40.37252 -39.47037 -38.15727 -36.76710 -36.51988 -35.33365 -35.00818 -34.16187 -32.22838 -31.73842 -29.40176 -28.64862 -27.33880 -24.75136 -24.21359 -22.61283 -21.97182 -20.79433 -19.75451 -19.19371 -18.94023 -18.51469 -17.96858 -17.72965 -17.29437 -17.11143 -16.61230 -16.04279 -15.73702 -15.15039 -15.05242 -14.62995 -14.38994 -14.14765 -13.95736 -13.91145 -13.54697 -13.46072 -13.37504 -13.27563 -12.98182 -12.70839 -12.66059 -12.38288 -12.14826 -12.07232 -11.79933 -11.73357 -11.48609 -11.10925 -10.62508 -9.83041 -9.79855 -9.26487 -8.43612 -7.15166 -1.51471 -0.02793 0.17044 0.29094 0.70218 1.22381 1.29065 1.37258 1.51187 1.54258 2.03723 2.07494 2.24052 2.26001 2.52448 2.65582 2.86722 3.20489 3.35517 3.39346 3.61961 3.80216 3.90109 4.06850 4.17435 4.37882 4.53339 4.59103 4.72550 4.95475 5.10663 5.17147 5.37424 5.42129 5.68581 5.79145 5.86526 6.04199 6.06087 6.49723 6.67232 7.11740 7.22842 7.36024 7.63574 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012300 B = 0.004345 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.825763 B = 6443.239900 C = 7340.453739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.331 3.669 3 C -0.314 4.314 4 C 0.316 3.684 5 N -0.558 5.558 6 C 0.366 3.634 7 C -0.370 4.370 8 H 0.116 0.884 9 C 0.047 3.953 10 N -0.713 5.713 11 Si 0.980 3.020 12 H -0.256 1.256 13 H -0.263 1.263 14 H -0.248 1.248 15 N -0.630 5.630 16 C 0.480 3.520 17 C -0.215 4.215 18 C -0.003 4.003 19 C -0.200 4.200 20 C -0.107 4.107 21 N 0.039 4.961 22 O -0.202 6.202 23 O -0.258 6.258 24 C 0.233 3.767 25 N -0.525 5.525 26 H 0.455 0.545 27 C 0.330 3.670 28 N -0.557 5.557 29 H 0.314 0.686 30 H 0.405 0.595 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.362 9.123 2.001 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.236 5.236 2 C 0.024 3.976 3 C -0.333 4.333 4 C 0.009 3.991 5 N -0.241 5.241 6 C 0.262 3.738 7 C -0.397 4.397 8 H 0.134 0.866 9 C -0.187 4.187 10 N -0.330 5.330 11 Si 0.799 3.201 12 H -0.181 1.181 13 H -0.187 1.187 14 H -0.171 1.171 15 N -0.253 5.253 16 C 0.238 3.762 17 C -0.239 4.239 18 C -0.029 4.029 19 C -0.209 4.209 20 C -0.208 4.208 21 N 0.498 4.502 22 O -0.389 6.389 23 O -0.430 6.430 24 C 0.093 3.907 25 N -0.136 5.136 26 H 0.301 0.699 27 C 0.096 3.904 28 N -0.281 5.281 29 H 0.128 0.872 30 H 0.242 0.758 31 H 0.170 0.830 32 H 0.166 0.834 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.988 6.878 2.776 14.956 hybrid contribution -0.292 1.036 -0.024 1.076 sum 12.695 7.914 2.751 15.211 Atomic orbital electron populations 1.81065 1.12751 1.10291 1.19485 1.24772 0.91392 0.91446 0.90026 1.12800 0.82591 0.90954 1.46986 1.25374 0.92048 0.91661 0.89970 1.81094 1.10567 1.12335 1.20107 1.16607 0.79919 0.90628 0.86645 1.21767 1.03614 0.97304 1.17034 0.86626 1.28282 0.95079 1.01625 0.93745 1.69172 1.14358 1.34851 1.14599 0.85106 0.79075 0.75056 0.80872 1.18055 1.18664 1.17085 1.41268 1.03397 1.41664 1.38989 1.17571 0.85513 0.86478 0.86679 1.21469 1.02780 1.01485 0.98189 1.20727 0.90807 0.94594 0.96730 1.19152 0.94186 1.05380 1.02135 1.20219 0.97086 1.06017 0.97483 1.49556 1.02049 0.98521 1.00076 1.96209 1.21231 1.54009 1.67471 1.96287 1.10727 1.71954 1.63985 1.22526 0.99732 0.85261 0.83154 1.41716 1.05138 1.37095 1.29658 0.69929 1.17727 0.85720 0.94504 0.92476 1.65704 1.04394 1.27165 1.30873 0.87231 0.75801 0.83044 0.83389 0.72212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -24.88 18.54 19.00 0.35 -24.53 16 2 C 0.33 14.17 14.03 88.33 1.24 15.41 16 3 C -0.31 -12.73 5.87 -20.18 -0.12 -12.85 16 4 C 0.32 13.56 14.81 88.33 1.31 14.87 16 5 N -0.56 -25.33 18.54 19.01 0.35 -24.98 16 6 C 0.37 13.61 4.97 39.02 0.19 13.81 16 7 C -0.37 -13.23 6.74 24.61 0.17 -13.07 16 8 H 0.12 4.17 7.34 -2.91 -0.02 4.14 16 9 C 0.05 1.53 5.36 87.04 0.47 1.99 16 10 N -0.71 -23.52 11.04 23.13 0.26 -23.26 16 11 Si 0.98 26.55 29.65 68.60 2.03 28.58 16 12 H -0.26 -7.02 7.11 99.48 0.71 -6.31 16 13 H -0.26 -6.92 7.11 99.48 0.71 -6.22 16 14 H -0.25 -6.86 7.11 99.48 0.71 -6.16 16 15 N -0.63 -22.22 3.38 -184.60 -0.62 -22.84 16 16 C 0.48 16.34 6.19 133.18 0.82 17.17 16 17 C -0.22 -7.15 8.70 22.27 0.19 -6.96 16 18 C 0.00 -0.09 9.92 22.36 0.22 0.14 16 19 C -0.20 -5.77 6.28 -20.15 -0.13 -5.89 16 20 C -0.11 -2.62 7.38 37.59 0.28 -2.34 16 21 N 0.04 1.18 4.99 -43.59 -0.22 0.96 16 22 O -0.20 -5.80 19.77 3.51 0.07 -5.73 16 23 O -0.26 -9.21 18.95 3.51 0.07 -9.15 16 24 C 0.23 3.00 11.55 82.96 0.96 3.96 16 25 N -0.52 -7.46 6.06 -192.30 -1.16 -8.62 16 26 H 0.46 2.95 8.96 -92.71 -0.83 2.12 16 27 C 0.33 8.60 8.42 133.87 1.13 9.73 16 28 N -0.56 -17.42 10.43 -190.08 -1.98 -19.40 16 29 H 0.31 9.36 8.28 -92.71 -0.77 8.59 16 30 H 0.40 14.20 8.94 -92.71 -0.83 13.37 16 31 H 0.15 5.07 6.08 -2.91 -0.02 5.06 16 32 H 0.15 4.44 7.38 -2.91 -0.02 4.42 16 33 H 0.26 0.39 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -59.11 327.93 5.48 -53.63 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.39 Total: 19.38 kcal Atomic # 6 Polarization: 29.22 SS G_CDS: 6.73 Total: 35.96 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -3.03 Total: -122.67 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.14 Total: -14.88 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: 2.03 Total: 28.58 kcal Total: -59.11 5.48 -53.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.948 kcal (2) G-P(sol) polarization free energy of solvation -59.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds