Wall clock time and date at job start Tue Mar 31 2020 14:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31081 * 1 3 3 Si 1.86795 * 120.00442 * 2 1 4 4 H 1.48503 * 109.47314 * 240.00202 * 3 2 1 5 5 H 1.48501 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47558 * 120.00310 * 3 2 1 7 7 C 1.39681 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00505 * 180.02562 * 7 2 1 9 9 C 1.40920 * 120.00030 * 359.97438 * 7 2 1 10 10 C 1.38969 * 126.93287 * 21.34563 * 9 7 2 11 11 N 1.35637 * 109.24367 * 180.02562 * 10 9 7 12 12 H 0.97005 * 124.69652 * 180.02562 * 11 10 9 13 13 C 1.38141 * 110.60846 * 359.97438 * 11 10 9 14 14 C 1.39186 * 132.75565 * 179.97438 * 13 11 10 15 15 C 1.37951 * 120.13913 * 180.02562 * 14 13 11 16 16 C 1.38479 * 120.70879 * 359.70652 * 15 14 13 17 17 C 1.38686 * 120.15778 * 0.56925 * 16 15 14 18 18 N 1.39482 * 120.23225 * 179.72722 * 17 16 15 19 19 C 1.36364 * 119.99885 * 354.28136 * 18 17 16 20 20 C 1.35577 * 119.99769 * 179.97438 * 19 18 17 21 21 C 1.40201 * 119.99722 * 179.97438 * 20 19 18 22 22 O 1.21536 * 120.00274 * 0.02562 * 21 20 19 23 23 C 1.50706 * 119.99667 * 179.72265 * 21 20 19 24 24 F 1.39902 * 109.46930 * 240.27493 * 23 21 20 25 25 F 1.39892 * 109.46971 * 0.27718 * 23 21 20 26 26 F 1.39907 * 109.46854 * 120.27809 * 23 21 20 27 27 C 1.39831 * 119.53722 * 359.45840 * 17 16 15 28 28 H 0.97003 * 119.99420 * 359.97438 * 1 2 3 29 29 H 1.08004 * 125.37501 * 0.02562 * 10 9 7 30 30 H 1.08005 * 119.92327 * 0.02562 * 14 13 11 31 31 H 1.08001 * 119.64302 * 179.97438 * 15 14 13 32 32 H 1.08005 * 119.91897 * 180.29879 * 16 15 14 33 33 H 0.97003 * 120.00014 * 174.27369 * 18 17 16 34 34 H 1.07998 * 120.00364 * 359.97438 * 19 18 17 35 35 H 1.07998 * 119.99867 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2449 1.6176 0.0000 4 1 3.0987 1.6963 -1.2125 5 1 1.2800 2.7464 -0.0006 6 1 3.0988 1.6963 1.2124 7 6 2.0092 -1.2097 -0.0005 8 1 3.0892 -1.2098 -0.0001 9 6 1.3046 -2.4301 -0.0005 10 6 -0.0091 -2.6358 -0.4044 11 7 -0.3230 -3.9468 -0.2540 12 1 -1.1848 -4.3365 -0.4695 13 6 0.7549 -4.6504 0.2474 14 6 0.9395 -5.9911 0.5723 15 6 2.1527 -6.4232 1.0668 16 6 3.2018 -5.5363 1.2409 17 6 3.0390 -4.1947 0.9293 18 7 4.0929 -3.2990 1.1095 19 6 5.2485 -3.7159 1.7014 20 6 6.2730 -2.8453 1.8760 21 6 7.4609 -3.2739 2.4851 22 8 7.5724 -4.4258 2.8561 23 6 8.6021 -2.3077 2.6735 24 9 9.7280 -2.7766 1.9882 25 9 8.2391 -1.0536 2.1712 26 9 8.8985 -2.1963 4.0363 27 6 1.8127 -3.7474 0.4279 28 1 -0.4849 0.8401 0.0004 29 1 -0.6750 -1.8723 -0.7789 30 1 0.1312 -6.6945 0.4371 31 1 2.2871 -7.4653 1.3167 32 1 4.1477 -5.8893 1.6245 33 1 4.0039 -2.3795 0.8136 34 1 5.3475 -4.7395 2.0311 35 1 6.1738 -1.8216 1.5467 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169480751.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:30 Heat of formation + Delta-G solvation = -115.795143 kcal Electronic energy + Delta-G solvation = -26174.150999 eV Core-core repulsion = 21722.802574 eV Total energy + Delta-G solvation = -4451.348425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11507 -47.63302 -47.61908 -40.31211 -39.45143 -37.79540 -35.38910 -33.67283 -31.90847 -30.09092 -28.56340 -28.22025 -27.20648 -24.95479 -23.50868 -21.68891 -21.19481 -19.87927 -19.60509 -18.67344 -18.54360 -18.34584 -17.54240 -16.20592 -15.99853 -15.83372 -15.54824 -14.69679 -14.63237 -14.52976 -14.34935 -14.14153 -14.02936 -13.86762 -13.75056 -13.74309 -13.73592 -13.40274 -13.10283 -12.76357 -12.65658 -12.10260 -11.73062 -11.56157 -11.32676 -11.09787 -10.87203 -10.69431 -10.14039 -10.10587 -9.94600 -9.50839 -9.01675 -7.81429 -7.40781 -6.73754 -6.61289 -4.29824 0.72084 1.95948 2.26912 2.53380 2.89100 2.99483 3.04890 3.07713 3.34572 3.68201 3.87876 3.97972 4.12675 4.23915 4.37383 4.49624 4.83787 5.21969 5.37609 5.48110 5.57523 5.67267 5.77088 5.91476 6.09232 6.19855 6.43183 6.63569 6.73029 6.92452 7.01940 7.06289 7.28306 7.43029 7.47842 7.62771 7.78398 7.96855 8.32808 8.69838 8.83820 8.87251 10.27479 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010651 B = 0.004183 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.211268 B = 6692.195664 C = 9118.064210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.439 4.439 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.072 4.072 11 N -0.583 5.583 12 H 0.399 0.601 13 C 0.107 3.893 14 C -0.161 4.161 15 C -0.087 4.087 16 C -0.225 4.225 17 C 0.191 3.809 18 N -0.606 5.606 19 C 0.274 3.726 20 C -0.419 4.419 21 C 0.377 3.623 22 O -0.459 6.459 23 C 0.424 3.576 24 F -0.175 7.175 25 F -0.172 7.172 26 F -0.175 7.175 27 C -0.153 4.153 28 H 0.277 0.723 29 H 0.179 0.821 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.426 0.574 34 H 0.163 0.837 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.440 -4.971 1.454 7.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.082 0.918 9 C 0.023 3.977 10 C -0.196 4.196 11 N -0.183 5.183 12 H 0.233 0.767 13 C -0.006 4.006 14 C -0.183 4.183 15 C -0.107 4.107 16 C -0.247 4.247 17 C 0.095 3.905 18 N -0.218 5.218 19 C 0.135 3.865 20 C -0.447 4.447 21 C 0.259 3.741 22 O -0.339 6.339 23 C 0.369 3.631 24 F -0.156 7.156 25 F -0.153 7.153 26 F -0.156 7.156 27 C -0.161 4.161 28 H 0.088 0.912 29 H 0.195 0.805 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.074 -5.373 1.563 7.554 hybrid contribution 0.198 1.453 -0.107 1.470 sum 5.272 -3.920 1.457 6.729 Atomic orbital electron populations 1.69639 1.07043 1.28591 1.40310 1.25578 0.94945 1.00528 0.93446 0.86336 0.79866 0.80649 0.79774 1.19130 1.20428 1.19105 1.18395 0.92772 0.89263 1.46771 0.91770 1.17913 0.92229 0.89115 0.98448 1.22713 1.00115 0.82522 1.14251 1.41504 1.11427 1.08566 1.56766 0.76743 1.17898 0.88417 0.92307 1.01982 1.19857 0.98319 0.92350 1.07743 1.20208 0.92109 0.98233 1.00128 1.20285 1.00424 0.91178 1.12829 1.17268 0.85976 0.88682 0.98562 1.42689 1.11144 1.14962 1.52968 1.22141 0.83513 0.99095 0.81722 1.20735 0.96604 1.03306 1.24069 1.20230 0.86758 0.87715 0.79364 1.90682 1.81272 1.18145 1.43758 1.21303 0.85342 0.82071 0.74422 1.93200 1.54346 1.88393 1.79682 1.93189 1.91368 1.43626 1.87157 1.93203 1.94048 1.96258 1.32096 1.19029 0.91880 0.96542 1.08694 0.91244 0.80455 0.87498 0.86557 0.86644 0.73152 0.81966 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.78 10.79 55.54 0.60 -19.18 16 2 C 0.07 1.57 5.47 -17.33 -0.09 1.48 16 3 Si 0.91 17.90 29.56 -169.99 -5.02 12.87 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.44 -10.39 8.84 -38.03 -0.34 -10.72 16 8 H 0.06 1.41 5.62 -52.48 -0.30 1.11 16 9 C 0.03 0.66 5.99 -104.81 -0.63 0.03 16 10 C -0.07 -1.60 10.77 -15.60 -0.17 -1.77 16 11 N -0.58 -11.03 5.99 -9.80 -0.06 -11.09 16 12 H 0.40 6.02 8.96 -40.82 -0.37 5.65 16 13 C 0.11 2.08 7.23 -83.91 -0.61 1.47 16 14 C -0.16 -2.63 10.07 -39.33 -0.40 -3.02 16 15 C -0.09 -1.32 10.00 -39.60 -0.40 -1.72 16 16 C -0.22 -3.61 9.29 -39.33 -0.37 -3.98 16 17 C 0.19 3.53 6.63 -83.62 -0.55 2.98 16 18 N -0.61 -10.12 5.44 -10.34 -0.06 -10.17 16 19 C 0.27 3.97 9.56 -16.49 -0.16 3.82 16 20 C -0.42 -5.98 9.15 -39.80 -0.36 -6.34 16 21 C 0.38 5.59 6.41 -33.57 -0.22 5.37 16 22 O -0.46 -7.61 16.83 5.33 0.09 -7.52 16 23 C 0.42 5.96 3.51 36.01 0.13 6.08 16 24 F -0.17 -2.47 17.30 2.25 0.04 -2.44 16 25 F -0.17 -2.35 16.00 2.25 0.04 -2.32 16 26 F -0.17 -2.50 17.30 2.25 0.04 -2.46 16 27 C -0.15 -3.24 6.27 -104.75 -0.66 -3.90 16 28 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 29 H 0.18 4.11 6.34 -52.48 -0.33 3.78 16 30 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.57 6.00 -52.48 -0.32 1.26 16 33 H 0.43 7.42 5.66 -40.82 -0.23 7.19 16 34 H 0.16 2.16 5.33 -52.49 -0.28 1.88 16 35 H 0.14 1.89 7.19 -52.49 -0.38 1.51 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -25.64 319.25 -6.52 -32.16 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -2.18 Total: 15.55 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -4.81 Total: -10.22 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.48 Total: -40.44 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.64 -6.52 -32.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169480751.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.635 kcal (2) G-P(sol) polarization free energy of solvation -25.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds