Wall clock time and date at job start Tue Mar 31 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99903 * 2 1 4 4 H 1.48497 * 109.46913 * 269.99735 * 3 2 1 5 5 H 1.48495 * 109.47169 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46937 * 150.00300 * 3 2 1 7 7 C 1.37880 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47079 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46701 * 180.02562 * 11 10 9 13 13 S 1.65602 * 119.99606 * 165.00263 * 12 11 10 14 14 O 1.42089 * 106.40516 * 311.45798 * 13 12 11 15 15 O 1.42101 * 106.40038 * 178.53710 * 13 12 11 16 16 C 1.76207 * 107.21788 * 64.99989 * 13 12 11 17 17 C 1.38295 * 120.08311 * 270.01996 * 16 13 12 18 18 C 1.38688 * 120.46081 * 180.09063 * 17 16 13 19 19 C 1.39367 * 119.92032 * 359.82628 * 18 17 16 20 20 C 1.39207 * 118.90893 * 0.12415 * 19 18 17 21 21 C 1.37676 * 120.96452 * 359.97438 * 20 19 18 22 22 C 1.51138 * 106.18064 * 179.97438 * 20 19 18 23 23 C 1.51392 * 104.19000 * 0.11132 * 22 20 19 24 24 O 1.21286 * 126.44458 * 179.97438 * 23 22 20 25 25 N 1.34377 * 107.11317 * 359.93165 * 23 22 20 26 26 H 0.97000 * 120.00389 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47108 * 59.99850 * 9 7 2 28 28 H 1.08997 * 109.47292 * 300.00276 * 9 7 2 29 29 H 1.09004 * 109.46387 * 60.00220 * 10 9 7 30 30 H 1.08997 * 109.46789 * 300.00440 * 10 9 7 31 31 H 1.08997 * 109.46648 * 60.00471 * 11 10 9 32 32 H 1.09001 * 109.47121 * 300.00072 * 11 10 9 33 33 H 0.97004 * 120.00512 * 344.99632 * 12 11 10 34 34 H 1.08000 * 119.81960 * 0.02562 * 17 16 13 35 35 H 1.08002 * 120.14045 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.04155 * 179.97438 * 21 20 19 37 37 H 1.09002 * 110.51071 * 241.39584 * 22 20 19 38 38 H 1.09004 * 110.51137 * 118.82658 * 22 20 19 39 39 H 0.96996 * 123.87332 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0177 0.0009 13 16 7.6217 -4.3368 -0.3713 14 8 7.9053 -3.6210 -1.5655 15 8 7.7865 -5.7430 -0.2503 16 6 8.6117 -3.6093 0.8918 17 6 9.0577 -2.3070 0.7593 18 6 9.8389 -1.7273 1.7477 19 6 10.1757 -2.4582 2.8856 20 6 9.7180 -3.7675 3.0042 21 6 8.9445 -4.3395 2.0194 22 6 10.2443 -4.2795 4.3252 23 6 11.0220 -3.1112 4.8929 24 8 11.6154 -3.0864 5.9504 25 7 10.9319 -2.1071 4.0044 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6796 0.8894 28 1 3.8745 -0.6807 -0.8905 29 1 3.6579 -3.1513 -0.8880 30 1 3.6586 -3.1493 0.8920 31 1 5.9156 -2.1216 0.8892 32 1 5.9142 -2.1237 -0.8908 33 1 5.4368 -4.7453 0.2194 34 1 8.7972 -1.7370 -0.1203 35 1 10.1840 -0.7097 1.6391 36 1 8.5977 -5.3567 2.1266 37 1 10.9009 -5.1355 4.1688 38 1 9.4204 -4.5474 4.9867 39 1 11.3453 -1.2383 4.1266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186954618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:05 Heat of formation + Delta-G solvation = -84.248507 kcal Electronic energy + Delta-G solvation = -24305.677393 eV Core-core repulsion = 20532.997625 eV Total energy + Delta-G solvation = -3772.679769 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96827 -38.94905 -37.34711 -36.31736 -36.11562 -35.91360 -33.25912 -32.87560 -31.21871 -30.41817 -28.61461 -26.86050 -23.68258 -22.88730 -22.58237 -21.73196 -20.56637 -19.44413 -18.54974 -17.98328 -17.33195 -17.15883 -16.81629 -16.58361 -16.05515 -15.38297 -14.89832 -14.81279 -14.63022 -14.43281 -14.10607 -13.74994 -13.72868 -13.61410 -13.14260 -12.94967 -12.50335 -12.37935 -12.17437 -12.09212 -11.77804 -11.69544 -11.62111 -11.29757 -11.17860 -10.97680 -10.74248 -10.15226 -9.89939 -9.75665 -9.46892 -9.38733 -9.25590 -8.88497 -8.59123 -6.09265 -4.08127 0.12521 0.41166 0.74327 1.80173 2.34463 2.82303 3.12173 3.26943 3.34602 3.35985 3.50278 3.67477 3.76318 4.20537 4.28305 4.40106 4.53705 4.73037 4.82633 4.85354 5.11975 5.17803 5.24459 5.31152 5.40333 5.48753 5.50093 5.60156 5.73936 5.88602 5.94662 6.12566 6.32917 6.37173 6.52882 6.72752 7.00169 7.18647 7.31753 7.33030 7.72482 8.47535 8.95355 9.52566 11.04117 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003141 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.636433 B = 8911.587293 C =10245.476140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.108 4.108 11 C 0.109 3.891 12 N -1.112 6.112 13 S 2.699 3.301 14 O -0.955 6.955 15 O -0.964 6.964 16 C -0.696 4.696 17 C 0.018 3.982 18 C -0.158 4.158 19 C 0.194 3.806 20 C -0.167 4.167 21 C 0.036 3.964 22 C -0.115 4.115 23 C 0.531 3.469 24 O -0.497 6.497 25 N -0.660 5.660 26 H 0.263 0.737 27 H 0.018 0.982 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.419 0.581 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.752 -6.929 5.481 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.052 4.052 10 C -0.148 4.148 11 C -0.016 4.016 12 N -0.874 5.874 13 S 2.787 3.213 14 O -0.945 6.945 15 O -0.954 6.954 16 C -0.783 4.783 17 C -0.001 4.001 18 C -0.180 4.180 19 C 0.095 3.905 20 C -0.171 4.171 21 C 0.017 3.983 22 C -0.154 4.154 23 C 0.319 3.681 24 O -0.370 6.370 25 N -0.303 5.303 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.255 0.745 34 H 0.170 0.830 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 23.380 -7.205 5.417 25.057 hybrid contribution 0.406 1.648 0.844 1.896 sum 23.786 -5.557 6.261 25.216 Atomic orbital electron populations 1.69908 1.06340 1.26963 1.50943 1.25041 0.94736 0.99219 0.94524 0.86778 0.80295 0.83612 0.78580 1.20189 1.21431 1.19004 1.21105 0.89346 0.94537 1.51057 0.90952 1.19551 0.97406 0.91646 0.96583 1.21672 0.90097 1.00779 1.02208 1.21628 0.98710 0.79699 1.01552 1.55477 1.27631 1.15952 1.88308 1.01733 0.72590 0.73114 0.73844 1.93595 1.84176 1.74533 1.42229 1.93580 1.85630 1.29203 1.86993 1.31047 1.22237 1.06591 1.18417 1.20925 0.90146 0.92061 0.97006 1.20692 1.03604 1.00864 0.92800 1.18497 0.90353 0.94123 0.87553 1.19893 1.04500 0.94664 0.97999 1.19959 0.90660 0.98920 0.88792 1.21088 1.01600 0.98366 0.94312 1.20689 0.79649 0.84815 0.82930 1.90848 1.43086 1.82096 1.20984 1.43916 1.50196 1.17501 1.18650 0.92678 0.96401 0.96631 0.91696 0.91913 0.92091 0.90435 0.74540 0.83046 0.84312 0.83397 0.85403 0.85303 0.74442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.52 -14.23 9.66 -34.44 -0.33 -14.56 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 10 C -0.11 -1.86 5.30 -26.73 -0.14 -2.00 16 11 C 0.11 1.46 6.22 -4.04 -0.03 1.43 16 12 N -1.11 -12.45 6.00 -10.61 -0.06 -12.51 16 13 S 2.70 30.70 5.74 -107.50 -0.62 30.08 16 14 O -0.96 -13.53 16.76 -57.18 -0.96 -14.49 16 15 O -0.96 -12.68 17.30 -57.18 -0.99 -13.67 16 16 C -0.70 -6.70 5.95 -39.50 -0.24 -6.94 16 17 C 0.02 0.16 9.53 -39.39 -0.38 -0.21 16 18 C -0.16 -1.19 10.12 -39.00 -0.39 -1.59 16 19 C 0.19 1.53 7.12 -83.58 -0.59 0.93 16 20 C -0.17 -1.33 6.36 -104.25 -0.66 -1.99 16 21 C 0.04 0.31 9.51 -39.73 -0.38 -0.07 16 22 C -0.11 -0.73 6.87 -28.48 -0.20 -0.92 16 23 C 0.53 4.57 8.71 -10.82 -0.09 4.48 16 24 O -0.50 -5.96 18.03 5.55 0.10 -5.86 16 25 N -0.66 -4.66 5.88 -9.63 -0.06 -4.71 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 33 H 0.42 4.07 8.65 -34.47 -0.30 3.77 16 34 H 0.15 1.18 7.62 -52.49 -0.40 0.78 16 35 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.15 1.03 7.63 -52.48 -0.40 0.63 16 37 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.42 2.08 8.96 -40.82 -0.37 1.72 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -36.08 347.18 -9.64 -45.72 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -4.76 Total: 0.53 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.64 Total: -20.08 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.65 Total: -43.67 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -1.85 Total: -34.02 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Atomic # 16 Polarization: 30.70 SS G_CDS: -0.62 Total: 30.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.08 -9.64 -45.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186954618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.525 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds