Wall clock time and date at job start Tue Mar 31 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99903 * 2 1 4 4 H 1.48497 * 109.46913 * 269.99735 * 3 2 1 5 5 H 1.48495 * 109.47169 * 30.00200 * 3 2 1 6 6 H 1.48501 * 109.46937 * 150.00300 * 3 2 1 7 7 C 1.37880 * 120.00293 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00123 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47142 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47079 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.46701 * 180.02562 * 11 10 9 13 13 S 1.65602 * 119.99606 * 165.00263 * 12 11 10 14 14 O 1.42089 * 106.40516 * 311.45798 * 13 12 11 15 15 O 1.42101 * 106.40038 * 178.53710 * 13 12 11 16 16 C 1.76207 * 107.21788 * 64.99989 * 13 12 11 17 17 C 1.38295 * 120.08311 * 270.01996 * 16 13 12 18 18 C 1.38688 * 120.46081 * 180.09063 * 17 16 13 19 19 C 1.39367 * 119.92032 * 359.82628 * 18 17 16 20 20 C 1.39207 * 118.90893 * 0.12415 * 19 18 17 21 21 C 1.37676 * 120.96452 * 359.97438 * 20 19 18 22 22 C 1.51138 * 106.18064 * 179.97438 * 20 19 18 23 23 C 1.51392 * 104.19000 * 0.11132 * 22 20 19 24 24 O 1.21286 * 126.44458 * 179.97438 * 23 22 20 25 25 N 1.34377 * 107.11317 * 359.93165 * 23 22 20 26 26 H 0.97000 * 120.00389 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47108 * 59.99850 * 9 7 2 28 28 H 1.08997 * 109.47292 * 300.00276 * 9 7 2 29 29 H 1.09004 * 109.46387 * 60.00220 * 10 9 7 30 30 H 1.08997 * 109.46789 * 300.00440 * 10 9 7 31 31 H 1.08997 * 109.46648 * 60.00471 * 11 10 9 32 32 H 1.09001 * 109.47121 * 300.00072 * 11 10 9 33 33 H 0.97004 * 120.00512 * 344.99632 * 12 11 10 34 34 H 1.08000 * 119.81960 * 0.02562 * 17 16 13 35 35 H 1.08002 * 120.14045 * 180.02562 * 18 17 16 36 36 H 1.08004 * 120.04155 * 179.97438 * 21 20 19 37 37 H 1.09002 * 110.51071 * 241.39584 * 22 20 19 38 38 H 1.09004 * 110.51137 * 118.82658 * 22 20 19 39 39 H 0.96996 * 123.87332 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5516 -2.6365 0.0001 12 7 6.0399 -4.0177 0.0009 13 16 7.6217 -4.3368 -0.3713 14 8 7.9053 -3.6210 -1.5655 15 8 7.7865 -5.7430 -0.2503 16 6 8.6117 -3.6093 0.8918 17 6 9.0577 -2.3070 0.7593 18 6 9.8389 -1.7273 1.7477 19 6 10.1757 -2.4582 2.8856 20 6 9.7180 -3.7675 3.0042 21 6 8.9445 -4.3395 2.0194 22 6 10.2443 -4.2795 4.3252 23 6 11.0220 -3.1112 4.8929 24 8 11.6154 -3.0864 5.9504 25 7 10.9319 -2.1071 4.0044 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6796 0.8894 28 1 3.8745 -0.6807 -0.8905 29 1 3.6579 -3.1513 -0.8880 30 1 3.6586 -3.1493 0.8920 31 1 5.9156 -2.1216 0.8892 32 1 5.9142 -2.1237 -0.8908 33 1 5.4368 -4.7453 0.2194 34 1 8.7972 -1.7370 -0.1203 35 1 10.1840 -0.7097 1.6391 36 1 8.5977 -5.3567 2.1266 37 1 10.9009 -5.1355 4.1688 38 1 9.4204 -4.5474 4.9867 39 1 11.3453 -1.2383 4.1266 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186954618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:05 Heat of formation + Delta-G solvation = -112.443474 kcal Electronic energy + Delta-G solvation = -24306.900019 eV Core-core repulsion = 20532.997625 eV Total energy + Delta-G solvation = -3773.902394 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57176 -39.62831 -38.33472 -37.35797 -36.99302 -36.85411 -35.07067 -33.43969 -32.91325 -31.03660 -29.20569 -28.48661 -24.45449 -24.29481 -23.18601 -22.34366 -22.06708 -20.38612 -19.14832 -18.94405 -18.80546 -18.15671 -17.82291 -17.19382 -17.06617 -16.33030 -16.09344 -16.00259 -15.48611 -15.32425 -15.16184 -14.77695 -14.42044 -14.39897 -14.21810 -13.99707 -13.77596 -13.59875 -13.22429 -13.18641 -13.10337 -12.74036 -12.65203 -12.35421 -12.28158 -12.04533 -11.78644 -11.59548 -11.48759 -11.41044 -11.25417 -10.71192 -10.37620 -10.03387 -9.51736 -8.24330 -6.28511 -0.64438 -0.36460 0.15481 1.16511 1.42117 1.43338 1.54852 1.77989 2.02574 2.41293 2.41492 2.79818 2.94697 3.12009 3.17644 3.47806 3.66063 3.97931 4.08335 4.14511 4.25401 4.33677 4.41517 4.48518 4.63172 4.73255 4.75309 4.83378 4.94942 4.98781 4.99507 5.12668 5.18801 5.34487 5.57713 5.59955 5.66911 5.72359 5.73558 6.12206 6.34143 6.74244 6.81014 7.36265 8.92560 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003141 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.636433 B = 8911.587293 C =10245.476140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.235 1.235 7 C -0.532 4.532 8 H 0.031 0.969 9 C -0.015 4.015 10 C -0.104 4.104 11 C 0.117 3.883 12 N -1.110 6.110 13 S 2.717 3.283 14 O -0.985 6.985 15 O -0.984 6.984 16 C -0.700 4.700 17 C 0.006 3.994 18 C -0.153 4.153 19 C 0.188 3.812 20 C -0.168 4.168 21 C 0.029 3.971 22 C -0.110 4.110 23 C 0.529 3.471 24 O -0.537 6.537 25 N -0.651 5.651 26 H 0.265 0.735 27 H 0.030 0.970 28 H 0.024 0.976 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.426 0.574 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.199 -6.026 6.069 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.158 1.158 7 C -0.570 4.570 8 H 0.049 0.951 9 C -0.053 4.053 10 C -0.143 4.143 11 C -0.009 4.009 12 N -0.872 5.872 13 S 2.809 3.191 14 O -0.975 6.975 15 O -0.974 6.974 16 C -0.790 4.790 17 C -0.014 4.014 18 C -0.174 4.174 19 C 0.089 3.911 20 C -0.172 4.172 21 C 0.010 3.990 22 C -0.149 4.149 23 C 0.318 3.682 24 O -0.413 6.413 25 N -0.294 5.294 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.262 0.738 34 H 0.178 0.822 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 25.818 -6.330 5.962 27.243 hybrid contribution -0.382 1.293 0.674 1.507 sum 25.437 -5.036 6.636 26.766 Atomic orbital electron populations 1.70083 1.08538 1.28089 1.53027 1.26089 0.95598 1.03803 0.94260 0.85650 0.79848 0.77918 0.79196 1.19347 1.21611 1.15834 1.21552 0.92478 0.92987 1.49975 0.95083 1.19532 0.93601 0.94876 0.97318 1.21508 0.93070 0.97823 1.01891 1.21449 0.95621 0.80889 1.02934 1.55304 1.27977 1.15430 1.88448 1.00897 0.72289 0.72344 0.73589 1.93554 1.84562 1.74958 1.44457 1.93551 1.85858 1.30599 1.87406 1.30668 1.22819 1.07253 1.18228 1.21134 0.90577 0.91890 0.97765 1.20938 1.02620 1.01909 0.91971 1.18650 0.90364 0.94332 0.87774 1.20037 1.04046 0.94824 0.98319 1.20121 0.90811 0.99544 0.88562 1.21171 1.02130 0.97999 0.93593 1.21011 0.79135 0.85602 0.82412 1.90832 1.44972 1.82859 1.22679 1.43870 1.49607 1.17795 1.18094 0.92674 0.95139 0.95738 0.92689 0.91844 0.89865 0.90054 0.73786 0.82220 0.81801 0.82155 0.83441 0.83577 0.73402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.22 13.96 21.45 0.30 -58.92 16 2 C 0.00 -0.08 5.47 84.66 0.46 0.38 16 3 Si 0.95 42.14 27.47 68.60 1.88 44.03 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.24 -9.22 6.54 99.48 0.65 -8.57 16 7 C -0.53 -29.34 9.66 25.60 0.25 -29.10 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 9 C -0.02 -0.63 4.04 29.85 0.12 -0.51 16 10 C -0.10 -3.43 5.30 30.60 0.16 -3.27 16 11 C 0.12 2.82 6.22 86.38 0.54 3.36 16 12 N -1.11 -22.89 6.00 -187.49 -1.12 -24.01 16 13 S 2.72 57.66 5.74 -56.49 -0.32 57.33 16 14 O -0.99 -26.64 16.76 -128.00 -2.14 -28.78 16 15 O -0.98 -24.70 17.30 -128.00 -2.21 -26.92 16 16 C -0.70 -11.86 5.95 22.32 0.13 -11.73 16 17 C 0.01 0.09 9.53 22.39 0.21 0.31 16 18 C -0.15 -1.82 10.12 22.65 0.23 -1.59 16 19 C 0.19 2.42 7.12 38.42 0.27 2.70 16 20 C -0.17 -2.21 6.36 -19.63 -0.12 -2.34 16 21 C 0.03 0.43 9.51 22.17 0.21 0.64 16 22 C -0.11 -1.11 6.87 29.46 0.20 -0.90 16 23 C 0.53 8.12 8.71 87.94 0.77 8.89 16 24 O -0.54 -12.37 18.03 -3.05 -0.05 -12.42 16 25 N -0.65 -7.66 5.88 -302.98 -1.78 -9.44 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 28 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 1.93 7.75 -2.39 -0.02 1.92 16 33 H 0.43 7.68 8.65 -96.74 -0.84 6.84 16 34 H 0.16 2.06 7.62 -2.91 -0.02 2.04 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.16 1.85 7.63 -2.91 -0.02 1.83 16 37 H 0.15 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.43 3.31 8.96 -92.71 -0.83 2.48 16 Total: -1.00 -78.97 347.18 -2.64 -81.61 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -0.62 Total: 10.68 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 3.43 Total: -33.16 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -2.61 Total: -92.38 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -4.41 Total: -68.12 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -0.32 Total: 57.33 kcal Total: -78.97 -2.64 -81.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186954618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.831 kcal (2) G-P(sol) polarization free energy of solvation -78.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds