Wall clock time and date at job start Tue Mar 31 2020 14:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48497 * 109.47392 * 275.30653 * 3 2 1 5 5 H 1.48506 * 109.47019 * 35.30287 * 3 2 1 6 6 H 1.48502 * 109.47369 * 155.30146 * 3 2 1 7 7 C 1.39935 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 346.75531 * 7 2 1 9 9 C 1.41412 * 119.99930 * 166.75374 * 7 2 1 10 10 C 1.40776 * 120.21124 * 331.36011 * 9 7 2 11 11 C 1.37644 * 119.89229 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32339 * 359.74840 * 11 10 9 13 13 C 1.39273 * 120.42379 * 0.50911 * 12 11 10 14 14 N 1.39849 * 119.94998 * 179.76005 * 13 12 11 15 15 C 1.34772 * 119.99869 * 326.45934 * 14 13 12 16 16 O 1.21700 * 120.00516 * 355.09716 * 15 14 13 17 17 C 1.46646 * 119.99716 * 175.09499 * 15 14 13 18 18 C 1.37893 * 126.23378 * 179.97438 * 17 15 14 19 19 C 1.39836 * 107.08409 * 180.21078 * 18 17 15 20 20 C 1.50702 * 126.06502 * 179.76341 * 19 18 17 21 21 F 1.39901 * 109.47184 * 90.00165 * 20 19 18 22 22 F 1.39901 * 109.46987 * 209.99787 * 20 19 18 23 23 F 1.39894 * 109.47155 * 329.99959 * 20 19 18 24 24 C 1.35457 * 107.86621 * 359.60592 * 19 18 17 25 25 N 1.35545 * 108.87568 * 0.40040 * 24 19 18 26 26 H 0.96997 * 125.68064 * 179.76968 * 25 24 19 27 27 C 1.38306 * 120.10018 * 359.49213 * 13 12 11 28 28 H 0.96996 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.05445 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84005 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.78894 * 180.27973 * 12 11 10 32 32 H 0.97000 * 119.99958 * 146.45306 * 14 13 12 33 33 H 1.08002 * 126.45869 * 359.95052 * 18 17 15 34 34 H 1.07994 * 125.56087 * 180.18571 * 24 19 18 35 35 H 1.08001 * 120.16171 * 180.22690 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3777 2.1112 -1.3940 5 1 1.5002 2.6178 0.8091 6 1 3.5914 1.4105 0.5850 7 6 2.0080 -1.2118 0.0005 8 1 1.4895 -2.1347 0.2153 9 6 3.3939 -1.2282 -0.2801 10 6 3.9601 -0.2429 -1.1110 11 6 5.3097 -0.2653 -1.3802 12 6 6.1157 -1.2503 -0.8332 13 6 5.5687 -2.2346 -0.0137 14 7 6.3908 -3.2272 0.5293 15 6 7.4507 -3.6806 -0.1688 16 8 7.6416 -3.2922 -1.3062 17 6 8.3741 -4.6421 0.4424 18 6 9.4928 -5.1880 -0.1510 19 6 10.0722 -6.0530 0.7826 20 6 11.3157 -6.8785 0.5748 21 9 12.4364 -6.1419 0.9731 22 9 11.2316 -8.0484 1.3373 23 9 11.4336 -7.2116 -0.7788 24 6 9.3193 -6.0146 1.9080 25 7 8.2824 -5.1636 1.7130 26 1 7.5911 -4.9563 2.3611 27 6 4.2148 -2.2288 0.2685 28 1 -0.4850 0.8400 0.0004 29 1 3.3364 0.5294 -1.5365 30 1 5.7433 0.4912 -2.0174 31 1 7.1744 -1.2570 -1.0465 32 1 6.1981 -3.5892 1.4084 33 1 9.8513 -4.9886 -1.1500 34 1 9.5116 -6.5736 2.8117 35 1 3.7902 -2.9895 0.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187702861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:08 Heat of formation + Delta-G solvation = -118.542225 kcal Electronic energy + Delta-G solvation = -25651.442113 eV Core-core repulsion = 21199.974566 eV Total energy + Delta-G solvation = -4451.467547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.25175 -47.79408 -47.72875 -41.85978 -39.64608 -37.50544 -34.75541 -33.38940 -32.37157 -30.52725 -30.20929 -28.74194 -26.02415 -25.22440 -23.75680 -21.53009 -21.23533 -20.75039 -20.36701 -19.10499 -18.60955 -18.37739 -17.88095 -16.82709 -16.20467 -16.05258 -15.51048 -15.44070 -14.69757 -14.64649 -14.56255 -14.22188 -14.18888 -13.99668 -13.93872 -13.90635 -13.85079 -13.53755 -12.95447 -12.75454 -12.73503 -12.30781 -12.14509 -11.79209 -11.15298 -10.85864 -10.71796 -10.35968 -9.92418 -9.77639 -9.71418 -9.48898 -9.09588 -8.84291 -7.78533 -7.27903 -6.99476 -4.58825 1.05253 1.79744 2.32664 2.41900 2.54988 2.71986 3.06954 3.15574 3.19239 3.26211 3.33798 3.72712 3.87331 3.92693 4.30874 4.43921 4.49185 4.60748 4.87287 5.22892 5.33586 5.50567 5.91224 5.99048 6.16667 6.22401 6.23985 6.38726 6.61442 6.65053 6.75923 7.03900 7.17767 7.35010 7.55657 7.72981 7.75509 7.96620 8.22738 8.30186 8.53747 8.72272 10.02880 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.002348 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.854124 B =11921.778218 C =12259.594362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.082 3.918 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.294 1.294 6 H -0.241 1.241 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.239 4.239 11 C -0.066 4.066 12 C -0.230 4.230 13 C 0.164 3.836 14 N -0.665 5.665 15 C 0.581 3.419 16 O -0.500 6.500 17 C -0.035 4.035 18 C -0.065 4.065 19 C -0.280 4.280 20 C 0.542 3.458 21 F -0.180 7.180 22 F -0.182 7.182 23 F -0.176 7.176 24 C 0.090 3.910 25 N -0.527 5.527 26 H 0.427 0.573 27 C -0.231 4.231 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.396 0.604 33 H 0.162 0.838 34 H 0.186 0.814 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.263 -10.689 6.770 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.258 4.258 11 C -0.085 4.085 12 C -0.251 4.251 13 C 0.073 3.927 14 N -0.308 5.308 15 C 0.368 3.632 16 O -0.374 6.374 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.288 4.288 20 C 0.487 3.513 21 F -0.161 7.161 22 F -0.163 7.163 23 F -0.157 7.157 24 C -0.050 4.050 25 N -0.122 5.122 26 H 0.266 0.734 27 C -0.252 4.252 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.230 0.770 33 H 0.179 0.821 34 H 0.203 0.797 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.012 -10.260 6.021 20.759 hybrid contribution -0.067 0.408 0.751 0.857 sum 16.946 -9.852 6.772 20.738 Atomic orbital electron populations 1.69651 1.08025 1.30303 1.35575 1.26173 0.94838 1.01777 0.90883 0.86279 0.81194 0.79505 0.78783 1.19752 1.22173 1.16386 1.19462 0.91361 0.95663 1.40893 0.89176 1.17477 0.93071 0.90353 0.88934 1.21031 0.95059 1.03786 1.05973 1.20485 0.93546 0.96773 0.97709 1.20342 0.99130 0.98058 1.07540 1.17446 0.89280 0.88147 0.97842 1.43324 1.27753 1.39516 1.20225 1.16928 0.80379 0.80328 0.85589 1.90901 1.72794 1.57158 1.16551 1.20626 1.01920 1.05790 0.86373 1.21029 0.93161 0.95157 0.99666 1.19348 1.00918 1.09690 0.98894 1.17382 0.82820 0.77326 0.73771 1.93218 1.55229 1.77048 1.90610 1.93175 1.96464 1.50612 1.76082 1.93196 1.96450 1.92847 1.33232 1.21699 0.88619 0.95266 0.99457 1.42108 1.22800 1.33974 1.13288 0.73390 1.20661 0.90215 1.05192 1.09176 0.90375 0.88246 0.88247 0.87301 0.77028 0.82061 0.79696 0.87889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.21 13.93 55.55 0.77 -20.44 16 2 C 0.08 2.10 5.47 -17.35 -0.09 2.00 16 3 Si 0.91 20.35 24.37 -169.99 -4.14 16.20 16 4 H -0.27 -5.90 6.77 56.52 0.38 -5.51 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.24 -5.42 6.48 56.52 0.37 -5.05 16 7 C -0.45 -11.66 9.61 -37.74 -0.36 -12.03 16 8 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.11 2.58 5.19 -106.85 -0.55 2.03 16 10 C -0.24 -5.68 6.92 -38.84 -0.27 -5.95 16 11 C -0.07 -1.45 10.02 -39.69 -0.40 -1.85 16 12 C -0.23 -4.92 8.66 -39.09 -0.34 -5.26 16 13 C 0.16 3.31 6.26 -83.79 -0.52 2.79 16 14 N -0.66 -10.15 5.33 -11.10 -0.06 -10.21 16 15 C 0.58 9.05 7.52 -12.87 -0.10 8.96 16 16 O -0.50 -9.78 14.55 5.19 0.08 -9.71 16 17 C -0.03 -0.41 7.05 -81.98 -0.58 -0.98 16 18 C -0.07 -0.75 10.29 -39.11 -0.40 -1.16 16 19 C -0.28 -2.70 5.57 -105.02 -0.58 -3.28 16 20 C 0.54 5.25 3.52 36.01 0.13 5.37 16 21 F -0.18 -1.84 17.30 2.25 0.04 -1.80 16 22 F -0.18 -1.65 17.02 2.25 0.04 -1.61 16 23 F -0.18 -1.90 17.04 2.25 0.04 -1.86 16 24 C 0.09 0.63 11.48 -16.90 -0.19 0.43 16 25 N -0.53 -3.93 6.00 -9.39 -0.06 -3.98 16 26 H 0.43 1.84 8.20 -40.82 -0.33 1.51 16 27 C -0.23 -5.04 9.70 -38.68 -0.38 -5.41 16 28 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 29 H 0.10 2.35 4.20 -52.48 -0.22 2.13 16 30 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.11 2.29 6.40 -52.49 -0.34 1.95 16 32 H 0.40 4.38 7.95 -40.82 -0.32 4.05 16 33 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.19 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -30.89 318.47 -5.66 -36.55 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -2.52 Total: 6.40 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -4.65 Total: -14.33 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.66 Total: -34.63 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.12 Total: -5.27 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.14 Total: 16.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -5.66 -36.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187702861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.997 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds