Wall clock time and date at job start Tue Mar 31 2020 14:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48497 * 109.47392 * 275.30653 * 3 2 1 5 5 H 1.48506 * 109.47019 * 35.30287 * 3 2 1 6 6 H 1.48502 * 109.47369 * 155.30146 * 3 2 1 7 7 C 1.39935 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99926 * 346.75531 * 7 2 1 9 9 C 1.41412 * 119.99930 * 166.75374 * 7 2 1 10 10 C 1.40776 * 120.21124 * 331.36011 * 9 7 2 11 11 C 1.37644 * 119.89229 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32339 * 359.74840 * 11 10 9 13 13 C 1.39273 * 120.42379 * 0.50911 * 12 11 10 14 14 N 1.39849 * 119.94998 * 179.76005 * 13 12 11 15 15 C 1.34772 * 119.99869 * 326.45934 * 14 13 12 16 16 O 1.21700 * 120.00516 * 355.09716 * 15 14 13 17 17 C 1.46646 * 119.99716 * 175.09499 * 15 14 13 18 18 C 1.37893 * 126.23378 * 179.97438 * 17 15 14 19 19 C 1.39836 * 107.08409 * 180.21078 * 18 17 15 20 20 C 1.50702 * 126.06502 * 179.76341 * 19 18 17 21 21 F 1.39901 * 109.47184 * 90.00165 * 20 19 18 22 22 F 1.39901 * 109.46987 * 209.99787 * 20 19 18 23 23 F 1.39894 * 109.47155 * 329.99959 * 20 19 18 24 24 C 1.35457 * 107.86621 * 359.60592 * 19 18 17 25 25 N 1.35545 * 108.87568 * 0.40040 * 24 19 18 26 26 H 0.96997 * 125.68064 * 179.76968 * 25 24 19 27 27 C 1.38306 * 120.10018 * 359.49213 * 13 12 11 28 28 H 0.96996 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.05445 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84005 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.78894 * 180.27973 * 12 11 10 32 32 H 0.97000 * 119.99958 * 146.45306 * 14 13 12 33 33 H 1.08002 * 126.45869 * 359.95052 * 18 17 15 34 34 H 1.07994 * 125.56087 * 180.18571 * 24 19 18 35 35 H 1.08001 * 120.16171 * 180.22690 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3777 2.1112 -1.3940 5 1 1.5002 2.6178 0.8091 6 1 3.5914 1.4105 0.5850 7 6 2.0080 -1.2118 0.0005 8 1 1.4895 -2.1347 0.2153 9 6 3.3939 -1.2282 -0.2801 10 6 3.9601 -0.2429 -1.1110 11 6 5.3097 -0.2653 -1.3802 12 6 6.1157 -1.2503 -0.8332 13 6 5.5687 -2.2346 -0.0137 14 7 6.3908 -3.2272 0.5293 15 6 7.4507 -3.6806 -0.1688 16 8 7.6416 -3.2922 -1.3062 17 6 8.3741 -4.6421 0.4424 18 6 9.4928 -5.1880 -0.1510 19 6 10.0722 -6.0530 0.7826 20 6 11.3157 -6.8785 0.5748 21 9 12.4364 -6.1419 0.9731 22 9 11.2316 -8.0484 1.3373 23 9 11.4336 -7.2116 -0.7788 24 6 9.3193 -6.0146 1.9080 25 7 8.2824 -5.1636 1.7130 26 1 7.5911 -4.9563 2.3611 27 6 4.2148 -2.2288 0.2685 28 1 -0.4850 0.8400 0.0004 29 1 3.3364 0.5294 -1.5365 30 1 5.7433 0.4912 -2.0174 31 1 7.1744 -1.2570 -1.0465 32 1 6.1981 -3.5892 1.4084 33 1 9.8513 -4.9886 -1.1500 34 1 9.5116 -6.5736 2.8117 35 1 3.7902 -2.9895 0.9068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187702861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:07 Heat of formation + Delta-G solvation = -138.421757 kcal Electronic energy + Delta-G solvation = -25652.304155 eV Core-core repulsion = 21199.974566 eV Total energy + Delta-G solvation = -4452.329589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.00791 -48.54434 -48.50086 -42.68378 -40.99127 -39.13736 -36.28225 -35.14723 -33.17100 -32.24238 -31.39031 -30.11958 -27.11994 -26.78343 -24.89940 -22.99176 -22.75778 -21.62536 -21.38757 -20.23576 -19.60482 -19.36525 -19.15244 -17.90908 -17.61083 -17.20122 -17.00893 -16.68880 -16.22515 -15.57591 -15.47974 -15.42350 -15.23264 -14.95659 -14.94206 -14.72478 -14.67357 -14.63806 -14.46521 -14.41053 -13.92057 -13.67122 -13.51747 -13.08568 -12.91171 -12.62983 -12.49664 -12.00511 -11.57443 -11.37205 -11.23204 -10.77535 -10.50479 -9.67427 -9.59289 -8.92101 -8.89473 -6.54912 0.09901 0.75485 0.76760 1.08787 1.28623 1.41944 1.50520 1.64515 1.82871 2.10181 2.11724 2.13475 2.62124 2.97062 3.11926 3.46309 3.56309 3.65334 4.02667 4.10142 4.25935 4.43345 4.47909 4.55924 4.73470 4.77615 4.91296 4.94577 5.18233 5.27468 5.40689 5.50546 5.65257 5.77584 5.89887 6.14263 6.20212 6.31937 6.47037 6.66338 6.79150 7.01684 8.18187 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.036268 B = 0.002348 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.854124 B =11921.778218 C =12259.594362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.046 3.954 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.476 4.476 8 H 0.061 0.939 9 C 0.088 3.912 10 C -0.256 4.256 11 C -0.070 4.070 12 C -0.229 4.229 13 C 0.174 3.826 14 N -0.655 5.655 15 C 0.585 3.415 16 O -0.547 6.547 17 C -0.057 4.057 18 C -0.069 4.069 19 C -0.302 4.302 20 C 0.546 3.454 21 F -0.184 7.184 22 F -0.176 7.176 23 F -0.186 7.186 24 C 0.131 3.869 25 N -0.509 5.509 26 H 0.444 0.556 27 C -0.234 4.234 28 H 0.294 0.706 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.418 0.582 33 H 0.150 0.850 34 H 0.233 0.767 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.539 -11.406 8.449 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.506 4.506 8 H 0.079 0.921 9 C 0.084 3.916 10 C -0.276 4.276 11 C -0.088 4.088 12 C -0.250 4.250 13 C 0.080 3.920 14 N -0.300 5.300 15 C 0.375 3.625 16 O -0.424 6.424 17 C -0.169 4.169 18 C -0.095 4.095 19 C -0.310 4.310 20 C 0.491 3.509 21 F -0.165 7.165 22 F -0.157 7.157 23 F -0.168 7.168 24 C -0.011 4.011 25 N -0.106 5.106 26 H 0.287 0.713 27 C -0.256 4.256 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.256 0.744 33 H 0.167 0.833 34 H 0.249 0.751 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.275 -10.999 7.746 23.505 hybrid contribution -0.530 0.419 0.249 0.720 sum 18.745 -10.580 7.994 22.961 Atomic orbital electron populations 1.69683 1.09073 1.31461 1.37538 1.26823 0.95423 1.04234 0.90366 0.85472 0.79790 0.76374 0.79176 1.18925 1.20917 1.16856 1.19450 0.92483 0.95143 1.43527 0.92106 1.17645 0.92740 0.91665 0.89501 1.21119 0.95959 1.03975 1.06509 1.20803 0.92895 0.97452 0.97677 1.20624 0.99477 0.97883 1.06978 1.17432 0.89209 0.88552 0.96759 1.43163 1.27117 1.38527 1.21174 1.17337 0.80116 0.80101 0.84992 1.90872 1.73846 1.59009 1.18651 1.19867 1.01756 1.06840 0.88431 1.21093 0.93311 0.95381 0.99751 1.19383 1.01667 1.10310 0.99628 1.17345 0.82745 0.77445 0.73371 1.93212 1.55539 1.77177 1.90586 1.93186 1.96431 1.50272 1.75818 1.93177 1.96501 1.92945 1.34148 1.22414 0.86276 0.92806 0.99626 1.42046 1.23312 1.33196 1.12020 0.71329 1.20827 0.90815 1.04816 1.09127 0.89575 0.88418 0.85556 0.86699 0.74435 0.83269 0.75088 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.87 13.93 21.82 0.30 -45.56 16 2 C 0.05 2.41 5.47 85.25 0.47 2.88 16 3 Si 0.97 42.03 24.37 68.60 1.67 43.70 16 4 H -0.26 -11.00 6.77 99.48 0.67 -10.32 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.25 -10.70 6.48 99.48 0.64 -10.06 16 7 C -0.48 -25.87 9.61 23.46 0.23 -25.64 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 9 C 0.09 4.34 5.19 -21.31 -0.11 4.23 16 10 C -0.26 -12.06 6.92 22.75 0.16 -11.90 16 11 C -0.07 -2.95 10.02 22.20 0.22 -2.72 16 12 C -0.23 -9.45 8.66 22.59 0.20 -9.25 16 13 C 0.17 6.75 6.26 38.13 0.24 6.99 16 14 N -0.65 -18.63 5.33 -307.25 -1.64 -20.26 16 15 C 0.58 17.33 7.52 86.44 0.65 17.98 16 16 O -0.55 -21.09 14.55 -4.35 -0.06 -21.16 16 17 C -0.06 -1.20 7.05 40.34 0.28 -0.92 16 18 C -0.07 -1.50 10.29 22.57 0.23 -1.27 16 19 C -0.30 -4.94 5.57 -20.12 -0.11 -5.06 16 20 C 0.55 9.33 3.52 71.24 0.25 9.58 16 21 F -0.18 -3.38 17.30 44.97 0.78 -2.61 16 22 F -0.18 -2.66 17.02 44.97 0.77 -1.89 16 23 F -0.19 -3.81 17.04 44.97 0.77 -3.05 16 24 C 0.13 1.21 11.48 83.48 0.96 2.17 16 25 N -0.51 -5.55 6.00 -183.62 -1.10 -6.65 16 26 H 0.44 1.81 8.20 -92.71 -0.76 1.05 16 27 C -0.23 -10.10 9.70 22.86 0.22 -9.88 16 28 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 29 H 0.10 4.57 4.20 -2.91 -0.01 4.56 16 30 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.12 4.65 6.40 -2.91 -0.02 4.63 16 32 H 0.42 8.02 7.95 -92.71 -0.74 7.28 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 35 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -69.40 318.47 4.97 -64.42 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.39 Total: 15.86 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.88 Total: -22.81 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.43 Total: -72.48 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.16 kcal Atomic # 9 Polarization: -9.85 SS G_CDS: 2.31 Total: -7.54 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.67 Total: 43.70 kcal Total: -69.40 4.97 -64.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187702861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.998 kcal (2) G-P(sol) polarization free energy of solvation -69.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds