Wall clock time and date at job start Tue Mar 31 2020 14:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48501 * 109.47448 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00174 * 3 2 1 6 6 H 1.48501 * 109.47103 * 59.99750 * 3 2 1 7 7 C 1.39925 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00444 * 196.80684 * 7 2 1 9 9 C 1.41415 * 119.99631 * 16.81564 * 7 2 1 10 10 C 1.40774 * 120.21094 * 25.16028 * 9 7 2 11 11 C 1.37644 * 119.89155 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32232 * 359.74552 * 11 10 9 13 13 C 1.39270 * 120.42709 * 0.51614 * 12 11 10 14 14 N 1.39841 * 119.95053 * 179.76591 * 13 12 11 15 15 C 1.34778 * 120.00321 * 325.50999 * 14 13 12 16 16 O 1.21712 * 119.99402 * 354.89870 * 15 14 13 17 17 C 1.46637 * 120.00308 * 174.62319 * 15 14 13 18 18 C 1.37897 * 126.23237 * 180.30071 * 17 15 14 19 19 C 1.39829 * 107.08407 * 179.97438 * 18 17 15 20 20 C 1.35458 * 107.86666 * 359.97438 * 19 18 17 21 21 C 1.50705 * 125.55982 * 180.02562 * 20 19 18 22 22 F 1.39906 * 109.47190 * 270.02423 * 21 20 19 23 23 F 1.39891 * 109.47482 * 30.02911 * 21 20 19 24 24 F 1.39905 * 109.46784 * 150.03203 * 21 20 19 25 25 N 1.35537 * 108.87301 * 359.75664 * 20 19 18 26 26 H 0.97008 * 125.67680 * 180.25943 * 25 20 19 27 27 C 1.38311 * 120.09862 * 359.47980 * 13 12 11 28 28 H 0.96996 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.05655 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.83930 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.79016 * 180.27612 * 12 11 10 32 32 H 0.97002 * 120.00505 * 145.51348 * 14 13 12 33 33 H 1.07999 * 126.45825 * 359.97438 * 18 17 15 34 34 H 1.08001 * 126.07150 * 179.97438 * 19 18 17 35 35 H 1.07995 * 120.15950 * 180.23377 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3465 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0534 -1.2316 0.2710 9 6 1.3463 -2.4104 -0.3532 10 6 0.2112 -2.3740 -1.1851 11 6 -0.4281 -3.5446 -1.5248 12 6 0.0430 -4.7602 -1.0564 13 6 1.1616 -4.8113 -0.2283 14 7 1.6257 -6.0435 0.2428 15 6 0.7515 -7.0291 0.5269 16 8 -0.4455 -6.8179 0.4626 17 6 1.2423 -8.3574 0.9075 18 6 0.4669 -9.4548 1.2175 19 6 1.3413 -10.5035 1.5192 20 6 2.6073 -10.0391 1.3906 21 6 3.8625 -10.8404 1.6223 22 9 4.2469 -10.7276 2.9628 23 9 3.6208 -12.1842 1.3180 24 9 4.8850 -10.3528 0.8014 25 7 2.5608 -8.7380 1.0138 26 1 3.3290 -8.1690 0.8489 27 6 1.8176 -3.6458 0.1241 28 1 -0.4850 0.8400 0.0004 29 1 -0.1574 -1.4291 -1.5561 30 1 -1.2986 -3.5157 -2.1634 31 1 -0.4626 -5.6738 -1.3320 32 1 2.5770 -6.1889 0.3652 33 1 -0.6122 -9.4965 1.2257 34 1 1.0576 -11.5059 1.8042 35 1 2.6873 -3.6846 0.7631 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188508928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:10 Heat of formation + Delta-G solvation = -136.770139 kcal Electronic energy + Delta-G solvation = -25724.201045 eV Core-core repulsion = 21271.943076 eV Total energy + Delta-G solvation = -4452.257969 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.28592 -48.82638 -48.76065 -42.73047 -40.93437 -38.96409 -36.30200 -34.99466 -32.51643 -32.00997 -31.79536 -30.03466 -27.29939 -27.01380 -24.29640 -22.94513 -22.54576 -21.82371 -21.46083 -20.52718 -19.64341 -19.50826 -19.26758 -18.54276 -17.47787 -16.83594 -16.80338 -16.26491 -16.01233 -15.70561 -15.66240 -15.40047 -15.23667 -15.19510 -14.93470 -14.90858 -14.77732 -14.70017 -14.39066 -14.12363 -13.91844 -13.55606 -13.20500 -13.02943 -12.93829 -12.76314 -12.35196 -11.97683 -11.51973 -11.34790 -11.11078 -10.82467 -10.33741 -9.82518 -9.45207 -8.84212 -8.62985 -6.38086 -0.10180 0.89135 0.94322 1.11326 1.29416 1.40107 1.51540 1.55343 1.80459 1.97250 2.15410 2.21606 2.57272 2.73687 3.00571 3.23724 3.56907 3.69260 3.99654 4.09345 4.39773 4.60513 4.65900 4.90321 4.93799 4.98805 5.05290 5.09675 5.26877 5.32029 5.52765 5.66736 5.77214 5.92635 6.04641 6.08076 6.23401 6.47030 6.64585 6.89987 6.91383 7.05556 8.32976 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.002511 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.435936 B =11147.634657 C =12015.015965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.095 3.905 10 C -0.192 4.192 11 C -0.096 4.096 12 C -0.235 4.235 13 C 0.160 3.840 14 N -0.654 5.654 15 C 0.581 3.419 16 O -0.541 6.541 17 C -0.015 4.015 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.058 4.058 21 C 0.549 3.451 22 F -0.171 7.171 23 F -0.159 7.159 24 F -0.178 7.178 25 N -0.506 5.506 26 H 0.433 0.567 27 C -0.252 4.252 28 H 0.288 0.712 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.414 0.586 33 H 0.167 0.833 34 H 0.186 0.814 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.891 -18.874 2.971 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.212 4.212 11 C -0.115 4.115 12 C -0.257 4.257 13 C 0.067 3.933 14 N -0.299 5.299 15 C 0.369 3.631 16 O -0.418 6.418 17 C -0.131 4.131 18 C -0.138 4.138 19 C -0.152 4.152 20 C -0.175 4.175 21 C 0.494 3.506 22 F -0.153 7.153 23 F -0.141 7.141 24 F -0.159 7.159 25 N -0.104 5.104 26 H 0.274 0.726 27 C -0.273 4.273 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.204 0.796 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.021 -18.505 2.903 20.004 hybrid contribution 1.031 1.047 0.015 1.469 sum 8.053 -17.458 2.918 19.446 Atomic orbital electron populations 1.69894 1.09127 1.30595 1.35527 1.26795 0.95468 1.04678 0.91167 0.85123 0.79495 0.76058 0.78810 1.17848 1.18999 1.19308 1.19840 0.98117 0.91961 1.42484 0.90049 1.17749 0.91570 0.92618 0.88860 1.21351 1.00245 0.96965 1.02631 1.20816 0.98769 0.92483 0.99457 1.20455 1.01479 0.97252 1.06468 1.17373 0.96428 0.83867 0.95609 1.43205 1.10436 1.11637 1.64620 1.17385 0.85898 0.82941 0.76830 1.90884 1.16341 1.81815 1.52739 1.20348 0.83701 0.94886 1.14193 1.21637 1.00806 0.90104 1.01263 1.21076 0.88784 1.01475 1.03896 1.20283 0.95216 0.86799 1.15182 1.17125 0.81312 0.77862 0.74275 1.93276 1.91889 1.95854 1.34237 1.93245 1.94245 1.33714 1.92850 1.93233 1.62251 1.87742 1.72721 1.41623 1.07690 1.09640 1.51407 0.72584 1.20863 1.06278 0.91197 1.08998 0.90093 0.87715 0.87080 0.87664 0.74895 0.81558 0.79646 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.04 10.94 21.82 0.24 -42.81 16 2 C 0.03 1.68 5.16 85.25 0.44 2.12 16 3 Si 0.98 37.31 29.59 68.60 2.03 39.34 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 6 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 7 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 8 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 9 C 0.09 5.05 5.57 -21.31 -0.12 4.93 16 10 C -0.19 -10.19 8.69 22.75 0.20 -9.99 16 11 C -0.10 -4.67 10.02 22.20 0.22 -4.45 16 12 C -0.24 -10.96 8.66 22.59 0.20 -10.77 16 13 C 0.16 6.96 6.24 38.13 0.24 7.19 16 14 N -0.65 -21.50 5.33 -307.24 -1.64 -23.13 16 15 C 0.58 19.17 7.51 86.44 0.65 19.82 16 16 O -0.54 -22.47 14.63 -4.39 -0.06 -22.53 16 17 C -0.02 -0.36 7.05 40.34 0.28 -0.08 16 18 C -0.11 -2.35 10.65 22.57 0.24 -2.11 16 19 C -0.13 -2.02 10.36 22.01 0.23 -1.80 16 20 C -0.06 -0.95 6.48 41.35 0.27 -0.68 16 21 C 0.55 8.20 3.54 71.24 0.25 8.45 16 22 F -0.17 -2.76 17.30 44.97 0.78 -1.98 16 23 F -0.16 -2.32 17.00 44.97 0.76 -1.56 16 24 F -0.18 -2.76 17.26 44.97 0.78 -1.99 16 25 N -0.51 -8.98 5.93 -171.94 -1.02 -10.00 16 26 H 0.43 5.70 8.20 -92.70 -0.76 4.94 16 27 C -0.25 -11.84 9.70 22.86 0.22 -11.62 16 28 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 29 H 0.10 5.78 6.17 -2.91 -0.02 5.76 16 30 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 31 H 0.11 4.79 6.47 -2.91 -0.02 4.77 16 32 H 0.41 10.03 7.96 -92.71 -0.74 9.30 16 33 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 Total: -1.00 -64.99 325.20 5.10 -59.90 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.30 Total: 29.45 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.53 Total: -24.69 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.42 Total: -75.94 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.53 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 2.32 Total: -5.53 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Total: -64.99 5.10 -59.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188508928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.873 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds