Wall clock time and date at job start Tue Mar 31 2020 13:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38599 * 119.94993 * 2 1 4 4 F 1.35103 * 119.86677 * 0.02562 * 3 2 1 5 5 C 1.38677 * 120.26237 * 179.72397 * 3 2 1 6 6 C 1.37817 * 120.15909 * 0.23247 * 5 3 2 7 7 C 1.39664 * 119.89087 * 0.02859 * 6 5 3 8 8 C 1.47642 * 120.12905 * 180.02562 * 7 6 5 9 9 O 1.21575 * 119.99735 * 235.06256 * 8 7 6 10 10 N 1.34773 * 120.00061 * 55.06869 * 8 7 6 11 11 C 1.46504 * 120.00012 * 185.55955 * 10 8 7 12 12 C 1.50705 * 109.46884 * 89.99754 * 11 10 8 13 13 H 1.07994 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99836 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00265 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46810 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47190 * 119.99987 * 16 14 12 19 19 H 1.48502 * 109.47404 * 240.00052 * 16 14 12 20 20 C 1.46495 * 120.00291 * 5.55497 * 10 8 7 21 21 C 1.53003 * 109.47204 * 94.97134 * 20 10 8 22 22 C 1.47194 * 109.47686 * 180.02562 * 21 20 10 23 23 N 6.25443 * 122.55239 * 96.12293 * 2 1 3 24 24 C 1.37996 * 119.94607 * 180.24082 * 2 1 3 25 25 Cl 1.73603 * 120.08051 * 0.03327 * 24 2 1 26 26 H 1.08998 * 109.47242 * 89.99705 * 1 2 3 27 27 H 1.08998 * 109.47485 * 209.99732 * 1 2 3 28 28 H 1.08997 * 109.47275 * 329.99796 * 1 2 3 29 29 H 1.08006 * 119.91769 * 180.26351 * 5 3 2 30 30 H 1.07997 * 120.05519 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.47510 * 209.99485 * 11 10 8 32 32 H 1.09003 * 109.47273 * 330.00380 * 11 10 8 33 33 H 0.96999 * 119.99821 * 180.02562 * 15 14 12 34 34 H 1.09003 * 109.47694 * 214.96807 * 20 10 8 35 35 H 1.08998 * 109.46983 * 334.97296 * 20 10 8 36 36 H 1.09009 * 109.46936 * 300.00492 * 21 20 10 37 37 H 1.08997 * 109.46842 * 59.99664 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.2009 0.0000 4 9 1.5196 2.3688 0.0005 5 6 3.5856 1.2085 0.0058 6 6 4.2845 0.0207 0.0067 7 6 3.5939 -1.1933 0.0012 8 6 4.3373 -2.4688 0.0028 9 8 4.1267 -3.2962 -0.8628 10 7 5.2493 -2.7162 0.9638 11 6 6.0732 -3.9258 0.8979 12 6 7.3351 -3.6326 0.1280 13 1 7.5061 -2.6443 -0.2725 14 6 8.2710 -4.6264 -0.0660 15 7 8.0621 -5.8303 0.4205 16 14 9.8348 -4.2633 -1.0209 17 1 9.8289 -2.8445 -1.4592 18 1 11.0136 -4.5074 -0.1514 19 1 9.9053 -5.1492 -2.2106 20 6 5.4167 -1.7755 2.0743 21 6 4.5738 -2.2367 3.2649 22 6 4.7416 -1.2912 4.3806 23 7 4.8723 -0.5623 5.2418 24 6 2.1958 -1.1957 -0.0050 25 17 1.3285 -2.6995 -0.0122 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 4.1192 2.1475 0.0100 30 1 5.3645 0.0285 0.0116 31 1 6.3299 -4.2461 1.9076 32 1 5.5170 -4.7174 0.3958 33 1 8.7206 -6.5294 0.2844 34 1 6.4667 -1.7394 2.3648 35 1 5.0919 -0.7830 1.7618 36 1 3.5238 -2.2728 2.9745 37 1 4.8986 -3.2291 3.5773 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191372501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:15 Heat of formation + Delta-G solvation = -33.658810 kcal Electronic energy + Delta-G solvation = -24828.451453 eV Core-core repulsion = 20932.461407 eV Total energy + Delta-G solvation = -3895.990046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.20761 -40.24672 -38.33439 -36.87026 -36.51947 -35.30687 -33.31820 -32.79426 -30.91309 -30.83532 -27.70557 -27.05342 -24.40533 -23.94003 -22.61635 -22.01552 -19.03302 -17.95775 -17.67096 -17.11474 -16.74650 -16.43172 -16.08531 -15.80484 -14.98243 -14.75353 -14.50545 -14.28247 -14.02412 -14.00359 -13.82566 -13.60805 -13.15076 -12.95878 -12.58381 -12.47766 -12.40596 -12.29517 -12.07586 -11.83704 -11.55197 -11.42249 -11.32510 -10.99370 -10.88125 -10.84790 -10.68537 -10.25498 -9.75802 -9.30086 -8.98964 -8.80512 -8.52138 -7.93090 -6.14094 -4.19367 0.58978 0.78208 1.94061 2.70913 2.82448 2.89581 3.24867 3.33248 3.35289 3.35824 3.56156 3.93700 4.10079 4.35845 4.36952 4.52871 4.66246 4.88087 5.02195 5.13902 5.15103 5.21230 5.24298 5.34417 5.44203 5.48146 5.73764 5.77825 5.81184 5.82247 5.91471 6.03065 6.41426 6.85117 7.27643 7.35043 7.57986 7.81347 8.09372 8.11796 8.68940 8.87332 9.46512 10.94000 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.012530 B = 0.004275 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.109950 B = 6547.962086 C = 7070.847878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 C 0.118 3.882 4 F -0.131 7.131 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.112 4.112 8 C 0.552 3.448 9 O -0.507 6.507 10 N -0.587 5.587 11 C 0.244 3.756 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.108 3.892 21 C -0.050 4.050 22 C 0.218 3.782 23 N -0.445 5.445 24 C 0.021 3.979 25 Cl -0.032 7.032 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.640 11.757 1.530 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.119 4.119 3 C 0.098 3.902 4 F -0.109 7.109 5 C -0.167 4.167 6 C -0.077 4.077 7 C -0.117 4.117 8 C 0.337 3.663 9 O -0.382 6.382 10 N -0.318 5.318 11 C 0.126 3.874 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.018 4.018 21 C -0.091 4.091 22 C -0.100 4.100 23 N -0.122 5.122 24 C -0.007 4.007 25 Cl -0.002 7.002 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.170 0.830 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.562 12.071 2.361 17.581 hybrid contribution 0.776 -0.015 -0.835 1.140 sum -11.786 12.056 1.526 16.928 Atomic orbital electron populations 1.20808 0.89000 1.04024 1.03546 1.19608 0.97737 0.90208 1.04344 1.17424 0.89745 0.80594 1.02453 1.91506 1.80146 1.45621 1.93669 1.21155 0.91955 1.00073 1.03512 1.21173 1.01049 0.89668 0.95833 1.20250 0.92089 0.95943 1.03373 1.17833 0.80028 0.85396 0.83014 1.90829 1.64869 1.46002 1.36530 1.48130 1.36815 1.25253 1.21572 1.19428 0.89050 0.80874 0.98052 1.21427 1.03011 0.97354 1.35221 0.92249 1.24907 0.98507 0.94823 0.95616 1.69929 1.35712 1.02060 1.45276 0.86464 0.82813 0.78475 0.79801 1.19772 1.20959 1.20857 1.21539 1.01175 0.93326 0.85793 1.19842 1.03663 0.96496 0.89107 1.29058 0.92943 0.93842 0.94157 1.81193 1.09059 1.10676 1.11264 1.20495 0.90892 0.87676 1.01618 1.98410 1.75783 1.29813 1.96221 0.90155 0.90131 0.90709 0.83597 0.83016 0.94416 0.93169 0.92643 0.88583 0.90127 0.87675 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.42 36.00 0.34 -0.72 16 2 C -0.12 -1.33 5.88 -104.58 -0.62 -1.94 16 3 C 0.12 1.28 7.25 -39.29 -0.28 1.00 16 4 F -0.13 -1.41 16.46 2.25 0.04 -1.37 16 5 C -0.15 -1.50 10.01 -39.57 -0.40 -1.89 16 6 C -0.06 -0.69 7.47 -39.20 -0.29 -0.98 16 7 C -0.11 -1.61 4.90 -104.94 -0.51 -2.13 16 8 C 0.55 10.12 6.53 -12.42 -0.08 10.04 16 9 O -0.51 -11.49 15.77 5.30 0.08 -11.40 16 10 N -0.59 -10.43 2.46 -176.25 -0.43 -10.86 16 11 C 0.24 5.56 5.23 -5.19 -0.03 5.54 16 12 C -0.53 -13.59 9.39 -34.44 -0.32 -13.91 16 13 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 16 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.11 1.42 5.19 -4.04 -0.02 1.40 16 21 C -0.05 -0.55 6.02 -29.52 -0.18 -0.73 16 22 C 0.22 2.71 15.43 -20.77 -0.32 2.39 16 23 N -0.44 -6.60 18.54 42.15 0.78 -5.82 16 24 C 0.02 0.28 6.34 -39.08 -0.25 0.03 16 25 Cl -0.03 -0.44 25.74 -51.86 -1.33 -1.77 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.69 6.91 -51.93 -0.36 0.34 16 28 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 29 H 0.15 1.12 8.06 -52.48 -0.42 0.69 16 30 H 0.15 1.64 7.58 -52.49 -0.40 1.24 16 31 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.32 7.35 -51.93 -0.38 0.93 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 35 H 0.08 0.92 4.42 -51.93 -0.23 0.69 16 36 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -31.02 346.30 -6.83 -37.85 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -3.84 Total: -3.09 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -3.06 Total: -0.30 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 1.08 Total: -40.72 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.33 Total: -1.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.02 -6.83 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191372501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.191 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds