Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86300 * 109.47044 * 2 1 4 4 C 1.86301 * 109.46949 * 240.00060 * 2 1 3 5 5 C 1.90000 * 109.46968 * 119.99987 * 2 1 3 6 6 C 3.07397 * 109.47192 * 119.99858 * 2 1 3 7 7 C 4.50600 * 109.47103 * 119.99949 * 2 1 3 8 8 N 1.32804 * 119.79660 * 143.95271 * 7 6 5 9 9 C 1.31692 * 121.66930 * 179.97438 * 8 7 6 10 10 C 1.38393 * 121.08455 * 359.97438 * 9 8 7 11 11 C 1.38586 * 119.48546 * 0.29735 * 10 9 8 12 12 C 1.39138 * 118.46095 * 359.48350 * 11 10 9 13 13 N 1.39422 * 120.55247 * 180.26308 * 12 11 10 14 14 S 1.65597 * 119.99968 * 35.21124 * 13 12 11 15 15 O 1.42102 * 106.40599 * 178.53875 * 14 13 12 16 16 O 1.42100 * 106.40275 * 311.46307 * 14 13 12 17 17 C 1.76206 * 107.22022 * 64.99881 * 14 13 12 18 18 H 1.08001 * 119.99610 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00176 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00136 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47038 * 119.99900 * 21 19 17 24 24 H 1.48496 * 109.47149 * 239.99759 * 21 19 17 25 25 H 1.09003 * 109.47373 * 300.00052 * 1 2 3 26 26 H 1.09003 * 109.46978 * 60.00063 * 1 2 3 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47199 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46914 * 300.00292 * 3 2 1 30 30 H 1.09003 * 109.47078 * 59.99767 * 3 2 1 31 31 H 1.08999 * 109.47494 * 299.99700 * 4 2 1 32 32 H 1.09003 * 109.47381 * 60.00123 * 4 2 1 33 33 H 1.09007 * 109.46789 * 180.02562 * 4 2 1 34 34 H 1.07995 * 119.45805 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.25258 * 180.02562 * 10 9 8 36 36 H 1.08003 * 120.77133 * 179.71807 * 11 10 9 37 37 H 0.96999 * 120.00402 * 215.21032 * 13 12 11 38 38 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4963 -0.8957 1.5514 6 6 2.8877 -1.4490 2.5099 7 6 3.3650 -2.1241 3.6792 8 7 4.6655 -2.3495 3.8264 9 6 5.1446 -2.9663 4.8867 10 6 4.3069 -3.4067 5.8965 11 6 2.9407 -3.2009 5.7878 12 6 2.4569 -2.5429 4.6614 13 7 1.0910 -2.3079 4.5100 14 16 0.1571 -1.9699 5.8351 15 8 -1.1608 -1.7494 5.3516 16 8 0.4727 -2.9543 6.8100 17 6 0.7126 -0.4295 6.4856 18 1 1.5262 0.0964 6.0081 19 6 0.1087 0.1046 7.6041 20 7 -0.8824 -0.5356 8.1852 21 14 0.6972 1.7380 8.2932 22 1 1.8163 2.2512 7.4630 23 1 -0.4214 2.7146 8.2754 24 1 1.1647 1.5465 9.6896 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5212 32 1 2.1207 -0.3644 -2.4112 33 1 3.5741 -0.8786 -1.5209 34 1 6.2087 -3.1312 4.9697 35 1 4.7144 -3.9108 6.7604 36 1 2.2676 -3.5401 6.5613 37 1 0.6876 -2.3423 3.6285 38 1 -1.3070 -0.1600 8.9723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = -49.700487 kcal Electronic energy + Delta-G solvation = -22350.321788 eV Core-core repulsion = 18942.346581 eV Total energy + Delta-G solvation = -3407.975207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.075 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.98728 -35.68910 -35.10553 -34.28064 -33.33973 -33.19582 -30.95764 -28.91730 -28.69424 -27.61328 -27.53777 -26.28471 -23.86098 -22.81981 -19.27667 -18.65158 -17.82464 -17.41261 -16.45753 -15.58424 -15.38546 -15.10378 -14.18982 -14.09941 -13.86573 -13.73299 -13.41204 -13.17741 -13.11487 -12.86396 -12.52147 -12.44938 -12.34349 -12.24269 -12.14398 -11.46365 -11.31761 -11.28093 -11.11183 -11.08193 -10.89285 -10.72738 -10.65518 -10.56597 -10.33132 -10.04648 -9.82455 -9.37784 -9.25247 -9.09376 -8.94666 -7.87656 -6.84314 -5.48114 0.99563 1.53167 2.00858 2.37676 2.56191 2.56405 2.98856 3.07400 3.16113 3.25804 3.34903 3.44885 3.94351 4.28360 4.35082 4.51394 4.62159 5.10605 5.19036 5.34765 5.49166 5.51506 5.55429 5.56138 5.57183 5.59474 5.63825 5.68011 5.83091 6.17823 6.23431 6.25850 6.35375 6.38463 6.44981 6.75784 6.93155 7.19382 7.53475 7.80384 7.83801 8.15254 8.75043 10.09987 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.004751 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.955000 B = 5891.892146 C = 6995.374866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.142 2.858 3 C -0.451 4.451 4 C -0.448 4.448 5 C -0.392 4.392 6 C -0.106 4.106 7 C 0.169 3.831 8 N -0.453 5.453 9 C 0.065 3.935 10 C -0.134 4.134 11 C -0.125 4.125 12 C 0.169 3.831 13 N -1.061 6.061 14 S 2.700 3.300 15 O -0.990 6.990 16 O -0.993 6.993 17 C -1.013 5.013 18 H 0.105 0.895 19 C 0.135 3.865 20 N -0.843 5.843 21 Si 0.923 3.077 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.269 1.269 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.186 0.814 37 H 0.416 0.584 38 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 0.126 -12.999 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.327 2.673 3 C -0.559 4.559 4 C -0.556 4.556 5 C -0.429 4.429 6 C -0.107 4.107 7 C 0.030 3.970 8 N -0.161 5.161 9 C -0.095 4.095 10 C -0.155 4.155 11 C -0.153 4.153 12 C 0.067 3.933 13 N -0.801 5.801 14 S 2.802 3.198 15 O -0.980 6.980 16 O -0.983 6.983 17 C -1.147 5.147 18 H 0.123 0.877 19 C -0.084 4.084 20 N -0.472 5.472 21 Si 0.746 3.254 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.194 1.194 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.203 0.797 37 H 0.250 0.750 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.421 -0.256 -12.913 14.895 hybrid contribution 0.080 0.890 1.068 1.392 sum 7.501 0.634 -11.845 14.034 Atomic orbital electron populations 1.26127 1.19933 1.05143 1.05020 0.77025 0.66111 0.64728 0.59401 1.26093 1.06595 1.18382 1.04815 1.26083 1.06617 1.08380 1.14555 1.35884 1.01048 1.01313 1.04698 1.20228 0.98480 0.98107 0.93873 1.16681 0.88466 0.99380 0.92432 1.67615 1.12842 1.12124 1.23535 1.22577 1.00262 0.96943 0.89756 1.22147 0.93356 1.00039 0.99946 1.22739 0.97721 0.96169 0.98721 1.18326 0.84407 0.94973 0.95629 1.54097 1.15087 1.83378 1.27554 1.01108 0.71763 0.76362 0.70541 1.93405 1.36564 1.87829 1.80203 1.93256 1.83896 1.62887 1.58255 1.30384 1.31538 1.28643 1.24182 0.87708 1.24735 0.91527 0.98691 0.93413 1.69886 1.19166 1.38631 1.19530 0.86079 0.79672 0.80552 0.79071 1.18492 1.19354 1.19371 0.90353 0.90729 0.90788 0.90973 0.90726 0.90647 0.90924 0.90698 0.90949 0.82486 0.84103 0.79690 0.75030 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -4.27 8.65 101.05 0.87 -3.40 16 2 Si 1.14 10.13 14.26 -169.99 -2.42 7.71 16 3 C -0.45 -3.96 8.65 101.05 0.87 -3.08 16 4 C -0.45 -3.48 8.65 101.05 0.87 -2.61 16 5 C -0.39 -5.95 12.14 29.55 0.36 -5.60 16 6 C -0.11 -1.96 12.53 -38.84 -0.49 -2.45 16 7 C 0.17 3.32 6.61 -84.79 -0.56 2.76 16 8 N -0.45 -8.23 10.28 -10.97 -0.11 -8.34 16 9 C 0.07 0.98 11.17 -17.55 -0.20 0.78 16 10 C -0.13 -2.06 10.10 -39.40 -0.40 -2.46 16 11 C -0.12 -2.40 9.33 -39.12 -0.36 -2.77 16 12 C 0.17 3.44 6.35 -83.35 -0.53 2.92 16 13 N -1.06 -22.52 5.48 32.65 0.18 -22.34 16 14 S 2.70 70.35 4.87 -107.50 -0.52 69.83 16 15 O -0.99 -28.25 18.02 -57.17 -1.03 -29.28 16 16 O -0.99 -27.02 14.75 -57.17 -0.84 -27.86 16 17 C -1.01 -27.70 9.68 30.60 0.30 -27.41 16 18 H 0.10 2.74 7.81 -52.49 -0.41 2.33 16 19 C 0.14 3.69 5.46 -17.82 -0.10 3.59 16 20 N -0.84 -24.00 13.19 55.43 0.73 -23.27 16 21 Si 0.92 20.40 29.54 -169.99 -5.02 15.38 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 26 H 0.07 0.56 7.96 -51.93 -0.41 0.14 16 27 H 0.07 0.70 7.96 -51.93 -0.41 0.28 16 28 H 0.07 0.63 7.96 -51.93 -0.41 0.22 16 29 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 30 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 31 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 32 H 0.07 0.46 7.96 -51.93 -0.41 0.05 16 33 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 34 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.19 3.85 5.14 -52.48 -0.27 3.58 16 37 H 0.42 7.76 8.31 -34.46 -0.29 7.47 16 38 H 0.29 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -35.82 358.39 -7.67 -43.49 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.67 Total: 9.00 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 0.65 Total: -39.71 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.80 Total: -53.95 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -1.87 Total: -57.14 kcal Atomic # 14 Polarization: 30.53 SS G_CDS: -7.44 Total: 23.09 kcal Atomic # 16 Polarization: 70.35 SS G_CDS: -0.52 Total: 69.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.82 -7.67 -43.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.215 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds