Wall clock time and date at job start Tue Mar 31 2020 14:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86300 * 109.47044 * 2 1 4 4 C 1.86301 * 109.46949 * 240.00060 * 2 1 3 5 5 C 1.90000 * 109.46968 * 119.99987 * 2 1 3 6 6 C 3.07397 * 109.47192 * 119.99858 * 2 1 3 7 7 C 4.50600 * 109.47103 * 119.99949 * 2 1 3 8 8 N 1.32804 * 119.79660 * 143.95271 * 7 6 5 9 9 C 1.31692 * 121.66930 * 179.97438 * 8 7 6 10 10 C 1.38393 * 121.08455 * 359.97438 * 9 8 7 11 11 C 1.38586 * 119.48546 * 0.29735 * 10 9 8 12 12 C 1.39138 * 118.46095 * 359.48350 * 11 10 9 13 13 N 1.39422 * 120.55247 * 180.26308 * 12 11 10 14 14 S 1.65597 * 119.99968 * 35.21124 * 13 12 11 15 15 O 1.42102 * 106.40599 * 178.53875 * 14 13 12 16 16 O 1.42100 * 106.40275 * 311.46307 * 14 13 12 17 17 C 1.76206 * 107.22022 * 64.99881 * 14 13 12 18 18 H 1.08001 * 119.99610 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00176 * 180.02562 * 17 14 13 20 20 N 1.31518 * 120.00136 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99967 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47050 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47038 * 119.99900 * 21 19 17 24 24 H 1.48496 * 109.47149 * 239.99759 * 21 19 17 25 25 H 1.09003 * 109.47373 * 300.00052 * 1 2 3 26 26 H 1.09003 * 109.46978 * 60.00063 * 1 2 3 27 27 H 1.09004 * 109.47206 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47199 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46914 * 300.00292 * 3 2 1 30 30 H 1.09003 * 109.47078 * 59.99767 * 3 2 1 31 31 H 1.08999 * 109.47494 * 299.99700 * 4 2 1 32 32 H 1.09003 * 109.47381 * 60.00123 * 4 2 1 33 33 H 1.09007 * 109.46789 * 180.02562 * 4 2 1 34 34 H 1.07995 * 119.45805 * 179.97438 * 9 8 7 35 35 H 1.08002 * 120.25258 * 180.02562 * 10 9 8 36 36 H 1.08003 * 120.77133 * 179.71807 * 11 10 9 37 37 H 0.96999 * 120.00402 * 215.21032 * 13 12 11 38 38 H 0.97001 * 120.00145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4963 -0.8957 1.5514 6 6 2.8877 -1.4490 2.5099 7 6 3.3650 -2.1241 3.6792 8 7 4.6655 -2.3495 3.8264 9 6 5.1446 -2.9663 4.8867 10 6 4.3069 -3.4067 5.8965 11 6 2.9407 -3.2009 5.7878 12 6 2.4569 -2.5429 4.6614 13 7 1.0910 -2.3079 4.5100 14 16 0.1571 -1.9699 5.8351 15 8 -1.1608 -1.7494 5.3516 16 8 0.4727 -2.9543 6.8100 17 6 0.7126 -0.4295 6.4856 18 1 1.5262 0.0964 6.0081 19 6 0.1087 0.1046 7.6041 20 7 -0.8824 -0.5356 8.1852 21 14 0.6972 1.7380 8.2932 22 1 1.8163 2.2512 7.4630 23 1 -0.4214 2.7146 8.2754 24 1 1.1647 1.5465 9.6896 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.5740 1.7565 -0.0005 29 1 2.1206 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5212 32 1 2.1207 -0.3644 -2.4112 33 1 3.5741 -0.8786 -1.5209 34 1 6.2087 -3.1312 4.9697 35 1 4.7144 -3.9108 6.7604 36 1 2.2676 -3.5401 6.5613 37 1 0.6876 -2.3423 3.6285 38 1 -1.3070 -0.1600 8.9723 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935149.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:23 Heat of formation + Delta-G solvation = -73.530701 kcal Electronic energy + Delta-G solvation = -22351.355143 eV Core-core repulsion = 18942.346581 eV Total energy + Delta-G solvation = -3409.008562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37464 -37.75628 -36.73339 -36.41298 -35.30209 -34.63517 -32.33103 -30.30708 -29.41727 -28.40734 -28.25533 -28.23663 -25.22913 -24.25632 -21.26310 -20.03163 -19.72652 -18.95340 -18.43090 -17.19064 -16.99295 -16.58512 -16.07236 -15.85652 -15.33230 -15.14659 -14.38956 -14.13366 -14.11518 -13.86054 -13.83097 -13.61897 -13.51994 -13.12218 -13.11139 -13.09552 -12.99772 -12.94443 -12.77878 -12.53137 -12.38753 -12.36900 -12.32966 -12.11452 -11.89225 -11.34996 -11.13502 -10.83741 -10.73431 -10.53891 -10.40011 -9.34184 -8.87112 -7.63459 -0.37984 -0.07241 0.25441 1.26406 1.27654 1.34758 1.45651 1.63167 1.67898 2.11264 2.34836 2.38836 2.45471 2.48981 2.53217 2.99723 3.27965 3.43572 3.78951 3.90113 4.02096 4.07117 4.35050 4.56515 4.79351 4.87386 4.88299 4.91875 4.94442 4.94902 4.98816 5.00748 5.13881 5.24229 5.57699 5.61970 5.71534 5.73425 5.74245 5.92786 6.50772 6.64841 6.81701 8.09418 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.004751 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.955000 B = 5891.892146 C = 6995.374866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.182 2.818 3 C -0.456 4.456 4 C -0.443 4.443 5 C -0.369 4.369 6 C -0.183 4.183 7 C 0.161 3.839 8 N -0.470 5.470 9 C 0.079 3.921 10 C -0.122 4.122 11 C -0.147 4.147 12 C 0.133 3.867 13 N -1.052 6.052 14 S 2.712 3.288 15 O -1.026 7.026 16 O -1.013 7.013 17 C -1.035 5.035 18 H 0.108 0.892 19 C 0.079 3.921 20 N -0.884 5.884 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.252 1.252 24 H -0.251 1.251 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.208 0.792 35 H 0.184 0.816 36 H 0.165 0.835 37 H 0.423 0.577 38 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.850 1.449 -14.235 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.364 2.636 3 C -0.564 4.564 4 C -0.553 4.553 5 C -0.401 4.401 6 C -0.184 4.184 7 C 0.023 3.977 8 N -0.179 5.179 9 C -0.081 4.081 10 C -0.142 4.142 11 C -0.176 4.176 12 C 0.033 3.967 13 N -0.797 5.797 14 S 2.815 3.185 15 O -1.016 7.016 16 O -1.003 7.003 17 C -1.169 5.169 18 H 0.126 0.874 19 C -0.136 4.136 20 N -0.515 5.515 21 Si 0.806 3.194 22 H -0.181 1.181 23 H -0.176 1.176 24 H -0.175 1.175 25 H 0.078 0.922 26 H 0.117 0.883 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.225 0.775 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.259 0.741 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.576 1.026 -14.107 17.081 hybrid contribution -0.498 0.415 1.362 1.508 sum 9.078 1.441 -12.745 15.714 Atomic orbital electron populations 1.26280 1.20790 1.05042 1.05348 0.76832 0.64998 0.64305 0.57442 1.26129 1.06762 1.18076 1.05423 1.25989 1.06724 1.08257 1.14296 1.38026 0.98424 0.98971 1.04663 1.20795 1.01365 1.00745 0.95451 1.16876 0.88877 0.99272 0.92656 1.67733 1.12042 1.13123 1.24980 1.23453 1.02425 0.94171 0.88098 1.22594 0.91461 0.98835 1.01262 1.22760 0.99557 0.97195 0.98098 1.18538 0.83720 0.97331 0.97146 1.53428 1.15728 1.83921 1.26614 1.00480 0.71286 0.76051 0.70724 1.93344 1.39017 1.88204 1.81014 1.93233 1.84193 1.63271 1.59626 1.30659 1.31869 1.29417 1.24940 0.87409 1.25913 0.91368 1.02787 0.93494 1.69946 1.20379 1.40689 1.20460 0.85128 0.79683 0.75584 0.79004 1.18080 1.17623 1.17466 0.92188 0.88250 0.91180 0.90819 0.88255 0.91942 0.91040 0.88258 0.90756 0.77534 0.79866 0.81797 0.74149 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -8.32 8.65 113.37 0.98 -7.34 16 2 Si 1.18 19.10 14.26 68.60 0.98 20.08 16 3 C -0.46 -7.03 8.65 113.37 0.98 -6.05 16 4 C -0.44 -5.59 8.65 113.37 0.98 -4.61 16 5 C -0.37 -11.33 12.14 74.32 0.90 -10.43 16 6 C -0.18 -6.98 12.53 30.02 0.38 -6.61 16 7 C 0.16 6.49 6.61 40.71 0.27 6.76 16 8 N -0.47 -16.76 10.28 -188.63 -1.94 -18.70 16 9 C 0.08 2.18 11.17 84.75 0.95 3.13 16 10 C -0.12 -3.52 10.10 22.39 0.23 -3.29 16 11 C -0.15 -5.80 9.33 22.57 0.21 -5.59 16 12 C 0.13 5.67 6.35 38.62 0.25 5.92 16 13 N -1.05 -47.36 5.48 -50.61 -0.28 -47.64 16 14 S 2.71 148.35 4.87 -56.49 -0.28 148.07 16 15 O -1.03 -61.52 18.02 -128.00 -2.31 -63.83 16 16 O -1.01 -57.93 14.75 -128.00 -1.89 -59.82 16 17 C -1.03 -58.31 9.68 67.73 0.66 -57.65 16 18 H 0.11 5.81 7.81 -2.91 -0.02 5.79 16 19 C 0.08 4.36 5.46 84.65 0.46 4.82 16 20 N -0.88 -51.44 13.19 21.45 0.28 -51.16 16 21 Si 0.99 41.38 29.54 68.60 2.03 43.41 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 25 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 26 H 0.10 1.25 7.96 -2.39 -0.02 1.23 16 27 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 28 H 0.07 1.13 7.96 -2.39 -0.02 1.11 16 29 H 0.10 1.05 7.96 -2.39 -0.02 1.03 16 30 H 0.06 1.14 7.96 -2.39 -0.02 1.12 16 31 H 0.07 0.96 7.96 -2.39 -0.02 0.94 16 32 H 0.10 0.82 7.96 -2.39 -0.02 0.80 16 33 H 0.07 0.95 7.96 -2.38 -0.02 0.94 16 34 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.18 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.16 7.17 5.14 -2.91 -0.01 7.15 16 37 H 0.42 17.02 8.31 -96.75 -0.80 16.21 16 38 H 0.30 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -81.69 358.39 4.13 -77.56 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.29 Total: 32.97 kcal Atomic # 6 Polarization: -88.19 SS G_CDS: 7.24 Total: -80.95 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -1.93 Total: -117.50 kcal Atomic # 8 Polarization: -119.46 SS G_CDS: -4.19 Total: -123.65 kcal Atomic # 14 Polarization: 60.49 SS G_CDS: 3.00 Total: 63.49 kcal Atomic # 16 Polarization: 148.35 SS G_CDS: -0.28 Total: 148.07 kcal Total: -81.69 4.13 -77.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935149.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.031 kcal (2) G-P(sol) polarization free energy of solvation -81.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds