Wall clock time and date at job start Tue Mar 31 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48505 * 109.46664 * 239.99830 * 3 2 1 5 5 H 1.48491 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47041 * 120.00463 * 3 2 1 7 7 C 1.37874 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00048 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40252 * 66.45668 * 9 7 2 11 11 O 1.42104 * 106.39925 * 293.53995 * 9 7 2 12 12 N 1.65602 * 107.21729 * 180.02562 * 9 7 2 13 13 C 1.39673 * 120.00224 * 60.03346 * 12 9 7 14 14 C 1.38935 * 120.07666 * 35.43710 * 13 12 9 15 15 C 1.38072 * 119.92453 * 180.27807 * 14 13 12 16 16 C 1.38314 * 120.07823 * 359.72381 * 15 14 13 17 17 C 1.38266 * 120.14317 * 359.97438 * 16 15 14 18 18 C 1.38126 * 120.07846 * 0.04622 * 17 16 15 19 19 C 1.50695 * 120.03620 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.47351 * 259.99689 * 19 18 17 21 21 C 1.46762 * 124.34848 * 89.99581 * 20 19 18 22 22 C 1.54478 * 105.54735 * 162.96478 * 21 20 19 23 23 C 1.54857 * 101.66099 * 25.43598 * 22 21 20 24 24 C 1.34415 * 124.34784 * 270.02721 * 20 19 18 25 25 O 1.21280 * 124.94389 * 0.40409 * 24 20 19 26 26 H 0.96996 * 120.00411 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99471 * 240.02709 * 12 9 7 28 28 H 1.08006 * 120.03296 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.96462 * 179.74875 * 15 14 13 30 30 H 1.08001 * 119.92617 * 180.02562 * 16 15 14 31 31 H 1.08007 * 119.95558 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47119 * 139.99432 * 19 18 17 33 33 H 1.09004 * 109.47290 * 19.99659 * 19 18 17 34 34 H 1.08994 * 110.25152 * 282.00911 * 21 20 19 35 35 H 1.09004 * 110.24419 * 43.92603 * 21 20 19 36 36 H 1.09000 * 110.96815 * 143.58501 * 22 21 20 37 37 H 1.09006 * 110.97291 * 267.34198 * 22 21 20 38 38 H 1.09000 * 110.46899 * 216.51383 * 23 22 21 39 39 H 1.09002 * 110.59941 * 93.93887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1237 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2485 -3.9353 0.0019 13 6 3.1655 -4.0370 1.0506 14 6 2.7822 -3.7088 2.3450 15 6 3.6929 -3.8050 3.3784 16 6 4.9839 -4.2330 3.1270 17 6 5.3668 -4.5663 1.8410 18 6 4.4610 -4.4720 0.8025 19 6 4.8795 -4.8350 -0.5989 20 7 5.1793 -3.6139 -1.3509 21 6 6.5037 -2.9850 -1.4149 22 6 6.4494 -2.0277 -2.6261 23 6 4.9331 -1.7274 -2.7199 24 6 4.2764 -2.9254 -2.0702 25 8 3.1056 -3.2213 -2.1819 26 1 -0.4850 0.8400 0.0004 27 1 2.2705 -4.5766 -0.7255 28 1 1.7741 -3.3749 2.5421 29 1 3.3967 -3.5462 4.3843 30 1 5.6941 -4.3077 3.9372 31 1 6.3756 -4.9006 1.6482 32 1 4.0710 -5.3756 -1.0911 33 1 5.7679 -5.4656 -0.5610 34 1 6.7003 -2.4255 -0.5005 35 1 7.2736 -3.7416 -1.5665 36 1 7.0172 -1.1181 -2.4302 37 1 6.8063 -2.5214 -3.5300 38 1 4.6251 -1.6419 -3.7620 39 1 4.6883 -0.8157 -2.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:44 Heat of formation + Delta-G solvation = -84.783289 kcal Electronic energy + Delta-G solvation = -27156.084132 eV Core-core repulsion = 23383.381174 eV Total energy + Delta-G solvation = -3772.702958 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23670 -38.83558 -35.99343 -35.16724 -34.28635 -33.88446 -33.22181 -32.97185 -30.30131 -28.44211 -27.31827 -26.06407 -25.81606 -22.20974 -21.76016 -21.09333 -19.10332 -18.92164 -17.51918 -17.04541 -16.54754 -16.39377 -16.08034 -15.18965 -15.04282 -14.86655 -14.38974 -13.90415 -13.87567 -13.47678 -13.31215 -13.19521 -13.06591 -12.70230 -12.46471 -12.33766 -11.97778 -11.87213 -11.43857 -11.26925 -11.18904 -11.17983 -11.06195 -10.83979 -10.60576 -10.37582 -10.19664 -10.04899 -9.67024 -9.23789 -9.17614 -8.74649 -8.53231 -8.38689 -7.53495 -6.62904 -5.20889 1.65620 1.83829 2.44230 3.07870 3.09480 3.14024 3.18339 3.32841 4.09147 4.25815 4.57881 4.59047 4.70082 4.74915 4.87342 5.05097 5.07809 5.22567 5.40030 5.42163 5.49197 5.64071 5.72948 5.77318 5.80615 5.84729 5.98047 6.02006 6.12410 6.16516 6.42110 6.68550 6.69981 6.74989 6.84279 6.96514 7.19944 7.38310 7.42898 7.46597 8.01761 8.05315 8.67627 8.95396 10.31786 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.007881 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.920754 B = 3551.844767 C = 4530.392534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.135 3.865 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.996 4.996 8 H 0.095 0.905 9 S 2.713 3.287 10 O -0.985 6.985 11 O -1.009 7.009 12 N -1.056 6.056 13 C 0.214 3.786 14 C -0.172 4.172 15 C -0.085 4.085 16 C -0.162 4.162 17 C -0.086 4.086 18 C -0.160 4.160 19 C 0.178 3.822 20 N -0.620 5.620 21 C 0.106 3.894 22 C -0.132 4.132 23 C -0.157 4.157 24 C 0.516 3.484 25 O -0.498 6.498 26 H 0.290 0.710 27 H 0.415 0.585 28 H 0.166 0.834 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.686 -6.031 -0.253 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.082 4.082 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.130 5.130 8 H 0.114 0.886 9 S 2.815 3.185 10 O -0.976 6.976 11 O -0.999 6.999 12 N -0.799 5.799 13 C 0.113 3.887 14 C -0.193 4.193 15 C -0.104 4.104 16 C -0.181 4.181 17 C -0.106 4.106 18 C -0.165 4.165 19 C 0.056 3.944 20 N -0.356 5.356 21 C -0.017 4.017 22 C -0.169 4.169 23 C -0.197 4.197 24 C 0.303 3.697 25 O -0.371 6.371 26 H 0.100 0.900 27 H 0.252 0.748 28 H 0.184 0.816 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.798 -6.197 -0.269 16.045 hybrid contribution 1.177 1.084 -0.191 1.612 sum 15.975 -5.113 -0.460 16.780 Atomic orbital electron populations 1.69884 1.06693 1.30608 1.40622 1.24680 0.94394 1.00476 0.88687 0.86276 0.80004 0.80093 0.79615 1.18916 1.20146 1.18928 1.30249 1.05428 1.11197 1.66163 0.88630 1.00582 0.71889 0.73350 0.72729 1.93386 1.72390 1.87049 1.44732 1.93273 1.72994 1.87654 1.46023 1.54217 1.49209 1.46933 1.29587 1.17400 0.88453 0.95304 0.87505 1.22177 1.03454 1.02865 0.90777 1.20993 0.93060 0.97602 0.98764 1.20935 0.96632 1.04004 0.96539 1.20688 0.97951 0.99579 0.92348 1.20021 0.92938 1.07765 0.95806 1.19974 1.01018 0.85344 0.88080 1.48289 1.10564 1.26925 1.49834 1.21981 0.84850 0.96120 0.98792 1.22613 0.96302 0.99884 0.98144 1.22380 0.94983 0.98935 1.03410 1.20831 0.85901 0.84187 0.78751 1.90761 1.14774 1.70226 1.61324 0.89973 0.74819 0.81642 0.86063 0.86677 0.86625 0.89812 0.89948 0.91383 0.90903 0.89585 0.90342 0.88327 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.50 13.19 55.43 0.73 -24.77 16 2 C 0.13 3.84 5.46 -17.82 -0.10 3.74 16 3 Si 0.92 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.42 16 7 C -1.00 -28.23 9.38 30.60 0.29 -27.94 16 8 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 9 S 2.71 76.59 4.00 -107.50 -0.43 76.16 16 10 O -0.99 -30.94 17.37 -61.95 -1.08 -32.02 16 11 O -1.01 -30.16 14.99 -57.17 -0.86 -31.02 16 12 N -1.06 -23.71 3.63 32.41 0.12 -23.60 16 13 C 0.21 4.28 6.22 -83.79 -0.52 3.75 16 14 C -0.17 -3.50 9.27 -39.38 -0.36 -3.86 16 15 C -0.09 -1.40 10.04 -39.61 -0.40 -1.79 16 16 C -0.16 -2.24 10.04 -39.54 -0.40 -2.64 16 17 C -0.09 -1.16 9.66 -39.61 -0.38 -1.55 16 18 C -0.16 -2.54 5.48 -104.43 -0.57 -3.11 16 19 C 0.18 2.40 5.67 -5.19 -0.03 2.38 16 20 N -0.62 -8.85 2.92 -173.79 -0.51 -9.36 16 21 C 0.11 1.09 7.34 -3.12 -0.02 1.07 16 22 C -0.13 -1.26 7.20 -24.98 -0.18 -1.44 16 23 C -0.16 -2.25 6.87 -26.62 -0.18 -2.43 16 24 C 0.52 9.20 7.89 -10.86 -0.09 9.12 16 25 O -0.50 -11.15 12.41 -2.24 -0.03 -11.17 16 26 H 0.29 7.87 8.31 -40.82 -0.34 7.53 16 27 H 0.42 8.66 6.16 -34.47 -0.21 8.45 16 28 H 0.17 3.86 5.18 -52.48 -0.27 3.59 16 29 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.17 8.04 -52.48 -0.42 0.75 16 32 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 33 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -37.58 335.09 -9.57 -47.14 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.60 Total: 12.46 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.95 Total: -24.71 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.34 Total: -57.73 kcal Atomic # 8 Polarization: -72.25 SS G_CDS: -1.96 Total: -74.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 76.59 SS G_CDS: -0.43 Total: 76.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.58 -9.57 -47.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.639 kcal (2) G-P(sol) polarization free energy of solvation -37.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds