Wall clock time and date at job start Tue Mar 31 2020 14:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48505 * 109.46664 * 239.99830 * 3 2 1 5 5 H 1.48491 * 109.47298 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47041 * 120.00463 * 3 2 1 7 7 C 1.37874 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00048 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40252 * 66.45668 * 9 7 2 11 11 O 1.42104 * 106.39925 * 293.53995 * 9 7 2 12 12 N 1.65602 * 107.21729 * 180.02562 * 9 7 2 13 13 C 1.39673 * 120.00224 * 60.03346 * 12 9 7 14 14 C 1.38935 * 120.07666 * 35.43710 * 13 12 9 15 15 C 1.38072 * 119.92453 * 180.27807 * 14 13 12 16 16 C 1.38314 * 120.07823 * 359.72381 * 15 14 13 17 17 C 1.38266 * 120.14317 * 359.97438 * 16 15 14 18 18 C 1.38126 * 120.07846 * 0.04622 * 17 16 15 19 19 C 1.50695 * 120.03620 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.47351 * 259.99689 * 19 18 17 21 21 C 1.46762 * 124.34848 * 89.99581 * 20 19 18 22 22 C 1.54478 * 105.54735 * 162.96478 * 21 20 19 23 23 C 1.54857 * 101.66099 * 25.43598 * 22 21 20 24 24 C 1.34415 * 124.34784 * 270.02721 * 20 19 18 25 25 O 1.21280 * 124.94389 * 0.40409 * 24 20 19 26 26 H 0.96996 * 120.00411 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99471 * 240.02709 * 12 9 7 28 28 H 1.08006 * 120.03296 * 0.02562 * 14 13 12 29 29 H 1.08003 * 119.96462 * 179.74875 * 15 14 13 30 30 H 1.08001 * 119.92617 * 180.02562 * 16 15 14 31 31 H 1.08007 * 119.95558 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.47119 * 139.99432 * 19 18 17 33 33 H 1.09004 * 109.47290 * 19.99659 * 19 18 17 34 34 H 1.08994 * 110.25152 * 282.00911 * 21 20 19 35 35 H 1.09004 * 110.24419 * 43.92603 * 21 20 19 36 36 H 1.09000 * 110.96815 * 143.58501 * 22 21 20 37 37 H 1.09006 * 110.97291 * 267.34198 * 22 21 20 38 38 H 1.09000 * 110.46899 * 216.51383 * 23 22 21 39 39 H 1.09002 * 110.59941 * 93.93887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1237 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4511 -2.7950 1.2501 12 7 2.2485 -3.9353 0.0019 13 6 3.1655 -4.0370 1.0506 14 6 2.7822 -3.7088 2.3450 15 6 3.6929 -3.8050 3.3784 16 6 4.9839 -4.2330 3.1270 17 6 5.3668 -4.5663 1.8410 18 6 4.4610 -4.4720 0.8025 19 6 4.8795 -4.8350 -0.5989 20 7 5.1793 -3.6139 -1.3509 21 6 6.5037 -2.9850 -1.4149 22 6 6.4494 -2.0277 -2.6261 23 6 4.9331 -1.7274 -2.7199 24 6 4.2764 -2.9254 -2.0702 25 8 3.1056 -3.2213 -2.1819 26 1 -0.4850 0.8400 0.0004 27 1 2.2705 -4.5766 -0.7255 28 1 1.7741 -3.3749 2.5421 29 1 3.3967 -3.5462 4.3843 30 1 5.6941 -4.3077 3.9372 31 1 6.3756 -4.9006 1.6482 32 1 4.0710 -5.3756 -1.0911 33 1 5.7679 -5.4656 -0.5610 34 1 6.7003 -2.4255 -0.5005 35 1 7.2736 -3.7416 -1.5665 36 1 7.0172 -1.1181 -2.4302 37 1 6.8063 -2.5214 -3.5300 38 1 4.6251 -1.6419 -3.7620 39 1 4.6883 -0.8157 -2.1747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980136.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:44 Heat of formation + Delta-G solvation = -113.665935 kcal Electronic energy + Delta-G solvation = -27157.336578 eV Core-core repulsion = 23383.381174 eV Total energy + Delta-G solvation = -3773.955404 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41985 -40.12669 -37.43770 -37.25578 -36.19615 -35.79198 -35.15502 -34.35059 -31.46021 -29.82469 -28.35027 -28.24839 -26.95129 -23.55181 -22.72053 -22.31735 -21.02559 -20.29218 -19.43287 -18.60018 -18.23264 -17.56192 -17.51091 -16.99780 -16.40699 -16.21551 -16.01280 -15.74028 -15.56044 -14.85466 -14.52488 -14.44016 -14.35991 -14.04814 -13.90246 -13.57822 -13.36123 -13.32498 -13.04236 -13.01959 -12.85511 -12.55411 -12.43052 -12.36801 -12.32211 -12.16044 -11.84083 -11.72693 -11.33590 -11.24599 -10.92258 -10.58560 -9.74221 -9.55466 -9.02358 -8.73057 -7.45615 0.19560 0.44613 0.66498 1.26875 1.31412 1.43462 1.78859 2.17151 2.27347 2.57420 2.84794 3.00228 3.58986 3.64763 3.73420 3.89674 4.03545 4.13173 4.26690 4.30853 4.37436 4.43332 4.49758 4.66047 4.71911 4.79200 4.82601 4.91292 4.95641 5.11909 5.13794 5.22906 5.30072 5.32986 5.50234 5.65843 5.73396 5.80587 5.87726 6.10809 6.30782 6.42944 6.74969 7.41894 8.21367 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010677 B = 0.007881 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.920754 B = 3551.844767 C = 4530.392534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.987 3.013 4 H -0.244 1.244 5 H -0.263 1.263 6 H -0.248 1.248 7 C -1.002 5.002 8 H 0.105 0.895 9 S 2.715 3.285 10 O -1.034 7.034 11 O -1.043 7.043 12 N -1.045 6.045 13 C 0.171 3.829 14 C -0.212 4.212 15 C -0.093 4.093 16 C -0.143 4.143 17 C -0.069 4.069 18 C -0.153 4.153 19 C 0.171 3.829 20 N -0.614 5.614 21 C 0.099 3.901 22 C -0.115 4.115 23 C -0.165 4.165 24 C 0.494 3.506 25 O -0.560 6.560 26 H 0.298 0.702 27 H 0.418 0.582 28 H 0.121 0.879 29 H 0.138 0.862 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.065 0.935 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.843 -5.922 0.494 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.805 3.195 4 H -0.167 1.167 5 H -0.187 1.187 6 H -0.172 1.172 7 C -1.136 5.136 8 H 0.124 0.876 9 S 2.818 3.182 10 O -1.024 7.024 11 O -1.033 7.033 12 N -0.793 5.793 13 C 0.072 3.928 14 C -0.233 4.233 15 C -0.111 4.111 16 C -0.162 4.162 17 C -0.088 4.088 18 C -0.159 4.159 19 C 0.050 3.950 20 N -0.348 5.348 21 C -0.023 4.023 22 C -0.152 4.152 23 C -0.205 4.205 24 C 0.282 3.718 25 O -0.438 6.438 26 H 0.108 0.892 27 H 0.256 0.744 28 H 0.138 0.862 29 H 0.156 0.844 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.004 -6.122 0.502 21.883 hybrid contribution -0.638 0.907 -0.331 1.157 sum 20.366 -5.215 0.171 21.024 Atomic orbital electron populations 1.69998 1.08866 1.32237 1.42024 1.26038 0.95378 1.05280 0.87584 0.85220 0.78991 0.74343 0.80989 1.16703 1.18706 1.17194 1.30353 1.05773 1.11467 1.66040 0.87646 1.00091 0.72502 0.74296 0.71287 1.93303 1.74627 1.88051 1.46428 1.93242 1.74829 1.88382 1.46848 1.53405 1.49355 1.45765 1.30755 1.17757 0.90007 0.98607 0.86390 1.22006 1.02728 1.05875 0.92734 1.21257 0.93896 0.97595 0.98385 1.21462 0.95644 1.00896 0.98221 1.21277 0.99468 0.97041 0.91031 1.20347 0.91247 1.06231 0.98047 1.20218 1.02850 0.85651 0.86329 1.48420 1.11556 1.26575 1.48249 1.22359 0.83411 0.97291 0.99193 1.22661 0.92405 1.01080 0.99083 1.22440 0.98687 0.96647 1.02729 1.21575 0.85646 0.85303 0.79246 1.90731 1.17499 1.71952 1.63606 0.89227 0.74378 0.86171 0.84439 0.82164 0.81197 0.91665 0.84558 0.90947 0.86641 0.87226 0.88111 0.88351 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.91 13.19 21.45 0.28 -56.62 16 2 C 0.07 4.05 5.46 84.65 0.46 4.52 16 3 Si 0.99 42.84 29.54 68.60 2.03 44.86 16 4 H -0.24 -9.66 7.11 99.48 0.71 -8.96 16 5 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 6 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 7 C -1.00 -59.47 9.38 67.73 0.64 -58.83 16 8 H 0.11 5.82 7.81 -2.91 -0.02 5.80 16 9 S 2.72 165.37 4.00 -56.49 -0.23 165.14 16 10 O -1.03 -70.46 17.37 -123.43 -2.14 -72.61 16 11 O -1.04 -68.02 14.99 -128.00 -1.92 -69.94 16 12 N -1.04 -50.28 3.63 -51.37 -0.19 -50.47 16 13 C 0.17 7.01 6.22 38.21 0.24 7.25 16 14 C -0.21 -9.03 9.27 22.40 0.21 -8.82 16 15 C -0.09 -2.92 10.04 22.25 0.22 -2.69 16 16 C -0.14 -3.27 10.04 22.29 0.22 -3.04 16 17 C -0.07 -1.48 9.66 22.25 0.22 -1.26 16 18 C -0.15 -4.50 5.48 -19.74 -0.11 -4.61 16 19 C 0.17 4.13 5.67 85.63 0.49 4.61 16 20 N -0.61 -15.91 2.92 -822.33 -2.40 -18.31 16 21 C 0.10 1.53 7.34 86.83 0.64 2.16 16 22 C -0.11 -1.72 7.20 31.73 0.23 -1.49 16 23 C -0.16 -4.57 6.87 30.67 0.21 -4.36 16 24 C 0.49 17.68 7.89 87.90 0.69 18.37 16 25 O -0.56 -26.58 12.41 4.42 0.05 -26.52 16 26 H 0.30 16.92 8.31 -92.71 -0.77 16.15 16 27 H 0.42 19.04 6.16 -96.75 -0.60 18.45 16 28 H 0.12 6.19 5.18 -2.91 -0.02 6.18 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.17 1.90 8.04 -2.91 -0.02 1.88 16 32 H 0.06 1.83 6.74 -2.38 -0.02 1.82 16 33 H 0.14 1.82 8.00 -2.39 -0.02 1.80 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -93.73 335.09 0.34 -93.39 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.49 Total: 39.28 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.35 Total: -48.21 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -2.30 Total: -125.40 kcal Atomic # 8 Polarization: -165.06 SS G_CDS: -4.01 Total: -169.07 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 165.37 SS G_CDS: -0.23 Total: 165.14 kcal Total: -93.73 0.34 -93.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980136.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.272 kcal (2) G-P(sol) polarization free energy of solvation -93.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds