Wall clock time and date at job start Tue Mar 31 2020 13:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38283 * 119.92291 * 2 1 4 4 C 1.38578 * 120.29464 * 179.97438 * 3 2 1 5 5 F 1.35100 * 119.93760 * 179.97438 * 4 3 2 6 6 C 1.38161 * 120.12950 * 0.02562 * 4 3 2 7 7 C 1.39574 * 119.83911 * 0.02562 * 6 4 3 8 8 C 1.47766 * 120.14513 * 179.97438 * 7 6 4 9 9 O 1.21565 * 120.00376 * 235.06446 * 8 7 6 10 10 N 1.34775 * 119.99964 * 55.07259 * 8 7 6 11 11 C 1.46508 * 119.99958 * 185.55868 * 10 8 7 12 12 C 1.50694 * 109.47113 * 89.99537 * 11 10 8 13 13 H 1.08004 * 120.00463 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00165 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00375 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 119.99560 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.46963 * 90.00240 * 16 14 12 18 18 H 1.48494 * 109.46974 * 209.99804 * 16 14 12 19 19 H 1.48493 * 109.47373 * 330.00094 * 16 14 12 20 20 C 1.46493 * 120.00052 * 5.55157 * 10 8 7 21 21 C 1.53005 * 109.47277 * 94.97179 * 20 10 8 22 22 C 1.47193 * 109.47124 * 180.02562 * 21 20 10 23 23 N 6.25995 * 122.78157 * 96.09137 * 2 1 3 24 24 C 1.38109 * 119.91766 * 180.02562 * 2 1 3 25 25 Cl 1.73597 * 120.06843 * 0.02562 * 24 2 1 26 26 H 1.08997 * 109.46930 * 89.99918 * 1 2 3 27 27 H 1.08995 * 109.47585 * 210.00340 * 1 2 3 28 28 H 1.09003 * 109.47005 * 330.00244 * 1 2 3 29 29 H 1.08007 * 119.84972 * 359.72579 * 3 2 1 30 30 H 1.07998 * 120.08575 * 180.02562 * 6 4 3 31 31 H 1.08995 * 109.46816 * 209.99505 * 11 10 8 32 32 H 1.09001 * 109.47002 * 329.99232 * 11 10 8 33 33 H 0.97000 * 119.99943 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.47240 * 214.97087 * 20 10 8 35 35 H 1.08999 * 109.47597 * 334.96957 * 20 10 8 36 36 H 1.08994 * 109.46732 * 300.00314 * 21 20 10 37 37 H 1.09005 * 109.46457 * 59.99851 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5825 1.2075 0.0005 5 9 4.2491 2.3826 0.0000 6 6 4.2838 0.0171 0.0005 7 6 3.5931 -1.1958 -0.0005 8 6 4.3363 -2.4730 -0.0011 9 8 4.1213 -3.3010 -0.8648 10 7 5.2524 -2.7200 0.9560 11 6 6.0753 -3.9302 0.8876 12 6 7.3338 -3.6387 0.1117 13 1 7.5037 -2.6509 -0.2907 14 6 8.2686 -4.6331 -0.0846 15 7 9.3671 -4.3787 -0.7613 16 14 7.9752 -6.3414 0.6119 17 1 7.2523 -7.1666 -0.3890 18 1 9.2791 -6.9774 0.9288 19 1 7.1610 -6.2383 1.8494 20 6 5.4256 -1.7782 2.0647 21 6 4.5877 -2.2376 3.2597 22 6 4.7612 -1.2910 4.3735 23 7 4.8964 -0.5585 5.2333 24 6 2.1958 -1.1970 -0.0005 25 17 1.3275 -2.7002 -0.0019 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6531 2.1317 -0.0045 30 1 5.3637 0.0249 0.0014 31 1 6.3362 -4.2496 1.8965 32 1 5.5162 -4.7220 0.3890 33 1 10.0249 -5.0781 -0.8990 34 1 6.4769 -1.7426 2.3504 35 1 5.1000 -0.7858 1.7528 36 1 3.5365 -2.2733 2.9740 37 1 4.9134 -3.2300 3.5716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193303018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:18 Heat of formation + Delta-G solvation = -29.493269 kcal Electronic energy + Delta-G solvation = -24913.491005 eV Core-core repulsion = 21017.681590 eV Total energy + Delta-G solvation = -3895.809415 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.11512 -40.34284 -38.52407 -36.91678 -36.50330 -35.41638 -33.37628 -32.68094 -31.07979 -30.78506 -28.17436 -27.38135 -24.66433 -23.94035 -22.20668 -21.98887 -19.12124 -17.84269 -17.31148 -17.08175 -16.92693 -16.79785 -16.32724 -15.85701 -15.66878 -14.77284 -14.52681 -14.18017 -14.09523 -13.95282 -13.85048 -13.56517 -13.18657 -12.79484 -12.60003 -12.55101 -12.48496 -12.42310 -12.26055 -11.95073 -11.77160 -11.65026 -11.36244 -11.09369 -10.91671 -10.88844 -10.61639 -10.26477 -9.67901 -9.45315 -9.12565 -8.73588 -8.66987 -8.02265 -6.16771 -4.17437 0.57035 0.73125 1.97229 2.63562 2.75940 2.82785 3.22844 3.26226 3.29192 3.31823 3.40289 3.89967 4.02553 4.32105 4.35081 4.46911 4.70891 4.82095 4.93770 5.04434 5.07836 5.16544 5.24614 5.29558 5.30381 5.38057 5.66350 5.70365 5.75638 5.79309 5.89096 5.96838 6.39788 6.51152 6.80008 7.05861 7.48463 7.52545 7.89137 8.33702 8.60621 8.85655 9.42066 10.96185 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.004617 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.453562 B = 6062.731590 C = 6510.973780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.052 4.052 3 C -0.134 4.134 4 C 0.107 3.893 5 F -0.131 7.131 6 C -0.122 4.122 7 C -0.073 4.073 8 C 0.555 3.445 9 O -0.504 6.504 10 N -0.581 5.581 11 C 0.215 3.785 12 C -0.536 4.536 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.893 5.893 16 Si 0.874 3.126 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.264 1.264 20 C 0.106 3.894 21 C -0.049 4.049 22 C 0.216 3.784 23 N -0.441 5.441 24 C -0.016 4.016 25 Cl -0.039 7.039 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 8.711 4.247 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.153 4.153 4 C 0.087 3.913 5 F -0.110 7.110 6 C -0.141 4.141 7 C -0.077 4.077 8 C 0.340 3.660 9 O -0.378 6.378 10 N -0.312 5.312 11 C 0.095 3.905 12 C -0.574 4.574 13 H 0.094 0.906 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.701 3.299 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.020 4.020 21 C -0.090 4.090 22 C -0.102 4.102 23 N -0.118 5.118 24 C -0.044 4.044 25 Cl -0.009 7.009 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.164 0.836 30 H 0.173 0.827 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.983 9.134 4.994 19.920 hybrid contribution 0.206 -1.001 -0.095 1.026 sum -16.778 8.134 4.899 19.278 Atomic orbital electron populations 1.20907 0.89205 1.03922 1.03524 1.19497 0.97141 0.90145 0.98548 1.21040 0.92133 0.98902 1.03260 1.17505 0.90085 0.81216 1.02445 1.91544 1.80653 1.45046 1.93736 1.21308 1.01845 0.89612 1.01376 1.19912 0.92070 0.94871 1.00855 1.17826 0.79918 0.85438 0.82794 1.90830 1.64881 1.45848 1.36287 1.47785 1.36410 1.24747 1.22262 1.19802 0.90522 0.82393 0.97791 1.21273 1.01489 0.99699 1.34948 0.90572 1.24832 0.94790 0.98575 0.94540 1.69881 1.09347 1.33876 1.40014 0.86889 0.77919 0.85000 0.80125 1.19809 1.21063 1.18892 1.21593 1.01554 0.93356 0.85515 1.19824 1.03716 0.96382 0.89125 1.29069 0.93064 0.93911 0.94174 1.81278 1.08904 1.10391 1.11217 1.20783 0.90927 0.88154 1.04568 1.98397 1.75638 1.30459 1.96427 0.90025 0.90283 0.90665 0.83628 0.82678 0.94622 0.93836 0.92416 0.88230 0.89802 0.87533 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.61 36.00 0.35 -0.50 16 2 C -0.05 -0.52 5.88 -104.65 -0.61 -1.14 16 3 C -0.13 -1.28 9.67 -39.44 -0.38 -1.66 16 4 C 0.11 1.23 7.29 -39.48 -0.29 0.94 16 5 F -0.13 -1.57 17.26 2.25 0.04 -1.53 16 6 C -0.12 -1.59 7.46 -39.11 -0.29 -1.88 16 7 C -0.07 -1.05 4.90 -104.95 -0.51 -1.57 16 8 C 0.56 10.10 6.53 -12.37 -0.08 10.02 16 9 O -0.50 -11.16 15.77 5.31 0.08 -11.07 16 10 N -0.58 -10.21 2.46 -176.20 -0.43 -10.64 16 11 C 0.21 4.60 4.29 -5.19 -0.02 4.58 16 12 C -0.54 -14.08 9.94 -34.44 -0.34 -14.42 16 13 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 16 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 20 C 0.11 1.40 5.19 -4.04 -0.02 1.38 16 21 C -0.05 -0.52 6.02 -29.52 -0.18 -0.70 16 22 C 0.22 2.63 15.44 -20.71 -0.32 2.31 16 23 N -0.44 -6.47 18.55 42.22 0.78 -5.69 16 24 C -0.02 -0.21 6.34 -39.07 -0.25 -0.46 16 25 Cl -0.04 -0.50 25.73 -51.86 -1.33 -1.84 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.57 6.90 -51.93 -0.36 0.21 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.16 2.03 7.58 -52.49 -0.40 1.63 16 31 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 34 H 0.10 1.37 8.11 -51.92 -0.42 0.95 16 35 H 0.08 1.01 4.42 -51.93 -0.23 0.78 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -32.36 343.83 -6.46 -38.82 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -3.83 Total: -2.12 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.05 Total: -1.12 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 1.12 Total: -41.84 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.33 Total: -1.84 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.36 -6.46 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193303018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.324 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds